Rmu_sc0042123.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042123.1
OG0001416
Physical Location & Seq
Reverse (-)
1 .. 1057
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042123.1_g000001.1.cds

Sequence Viewer

Length: 713 bp
atggtgattcctccagaaatggatttctacgcgatgaagaggaaggagctgcaagcgctgtgcaagaagcatggaattcgggccaatatgaagaacgcagaaatggccgaaaggcttaccttgcttcttaaggaagatgaaaattcgataacagaagctaagccggtggagaaacagttggaagcaactgaaatggcgattgattcggttgaaagtcagaaagttaagaaagtgaagttcagtcctgacaatgaaaccttttactttgtggctactgacaaagactcggactcggattgtgagtacaaaccaaagaagtggggcggaagaaggaagtctatggggaagaaggttttggagaagaaggaagttttggatgtggttgaaaatgcaagagaagttgaagtagtggaaattaaggacacccctgttagtgttacgaggtctcaaaagcaaaagatggttgcaggagctgtggagtcggttttttcacctggtcatgggcaaaagaaagtgataattgatgaggaaaatgttgatgggaaaggtattaaacctgtaagagtccagaaggaatatacagcagttgtgctccacaagggaaaagaggttgcaagagatgatgctagaaaaagaacaaggaacgaaaatacagaagccgcttcccaagtggtgccaagtgaagttctcttacctaaacctcctttaaggag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.79

Weight (kDa)

8.95

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 673
AccII CGCG 1 cut(s) 32
AciI CCGC 2 cut(s) 324, 660
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 2 cut(s) 75, 142
AfaI GTAC 1 cut(s) 305
AfeI AGCGCT 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 500
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 212, 386, 404
AjnI CCWGG 1 cut(s) 493
AjuI GAANNNNNNNTTGG 4 cut(s) 338, 356, 370, 388
AluBI AGCT 3 cut(s) 49, 158, 473
AluI AGCT 3 cut(s) 49, 158, 473
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 1 cut(s) 450
AlwNI CAGNNNCTG 1 cut(s) 473
Aor51HI AGCGCT 1 cut(s) 57
AoxI GGCC 2 cut(s) 81, 105
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 2 cut(s) 75, 142
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 16, 483
BanI GGYRCC 1 cut(s) 673
BarI GAAGNNNNNNTAC 2 cut(s) 675, 707
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 36
BccI CCATC 2 cut(s) 454, 533
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 1 cut(s) 495
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 1 cut(s) 627
BfoI RGCGCY 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 50, 660
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 2 cut(s) 51, 661
Bme1390I CCNGG 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 675
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 613
Bpu1102I GCTNAGC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 450
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse118I RCCGGY 1 cut(s) 163
BseBI CCWGG 1 cut(s) 495
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 500
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 83, 107
BshNI GGYRCC 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 594
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 450
BsnI GGCC 2 cut(s) 83, 107
Bso31I GGTCTC 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 594
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 2 cut(s) 324, 660
BspANI GGCC 2 cut(s) 83, 107
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 675
BspT107I GGYRCC 1 cut(s) 673
BspTI CTTAAG 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 450
BstMWI GCNNNNNNNGC 3 cut(s) 55, 104, 121
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 83, 107
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 81
CsiI ACCWGGT 1 cut(s) 493
Csp6I GTAC 1 cut(s) 304
CviAII CATG 2 cut(s) 71, 500
CviJI RGCY 9 cut(s) 49, 83, 107, 115, 158, 163, 272, 473, 659
CviKI_1 RGCY 9 cut(s) 49, 83, 107, 115, 158, 163, 272, 473, 659
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 450
Eco47III AGCGCT 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 493
FaeI CATG 2 cut(s) 74, 503
FaiI YATR 5 cut(s) 72, 89, 341, 501, 579
FatI CATG 2 cut(s) 70, 499
Fnu4HI GCNGC 2 cut(s) 50, 660
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 50, 660
FspBI CTAG 1 cut(s) 627
GlaI GCGC 1 cut(s) 57
GluI GCNGC 2 cut(s) 50, 660
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 2 cut(s) 83, 107
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 58
Hin1II CATG 2 cut(s) 74, 503
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 6 cut(s) 7, 203, 284, 290, 479, 564
HpaII CCGG 1 cut(s) 164
HphI GGTGA 2 cut(s) 16, 483
Hpy188I TCNGA 3 cut(s) 219, 289, 295
Hpy188III TCNNGA 3 cut(s) 14, 245, 568
HpyAV CCTTC 5 cut(s) 37, 324, 343, 358, 565
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 52, 63, 392, 467, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 104, 121
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 2 cut(s) 74, 503
HspAI GCGC 1 cut(s) 56
LmnI GCTCC 3 cut(s) 46, 470, 597
LpnPI CCDG 9 cut(s) 27, 177, 258, 441, 453, 480, 507, 570, 581
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 613
MabI ACCWGGT 1 cut(s) 493
MaeI CTAG 1 cut(s) 627
MaeIII GTNAC 1 cut(s) 436
MboII GAAGA 6 cut(s) 49, 103, 146, 339, 358, 373
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 4 cut(s) 75, 142, 414, 519
MlyI GAGTC 4 cut(s) 278, 284, 488, 573
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 21, 33, 435, 520, 601, 711
MseI TTAA 5 cut(s) 129, 225, 417, 552, 707
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 55, 104, 121
NlaIII CATG 2 cut(s) 74, 503
NlaIV GGNNCC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 7, 203
PkrI GCNGC 2 cut(s) 51, 661
PleI GAGTC 4 cut(s) 278, 284, 487, 572
PpsI GAGTC 4 cut(s) 278, 284, 487, 572
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 675
PspPI GGNCC 1 cut(s) 81
PstNI CAGNNNCTG 1 cut(s) 473
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 5 cut(s) 129, 225, 417, 552, 707
SatI GCNGC 2 cut(s) 50, 660
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 4 cut(s) 278, 284, 488, 573
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 594
SexAI ACCWGGT 1 cut(s) 493
SfaNI GCATC 1 cut(s) 613
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 4 cut(s) 75, 142, 414, 519
SsiI CCGC 2 cut(s) 324, 660
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 146
TasI AATT 4 cut(s) 75, 142, 414, 519
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 2 cut(s) 7, 203
Tru1I TTAA 5 cut(s) 129, 225, 417, 552, 707
Tru9I TTAA 5 cut(s) 129, 225, 417, 552, 707
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 50, 104, 153, 267
Vha464I CTTAAG 1 cut(s) 128
XapI RAATTY 2 cut(s) 75, 142
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.