Rorug06G0085900

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
11532095 .. 11532999
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0085900.1

Sequence Viewer

Length: 267 bp
ATGAAACAAATAATAATAAGCCCAGAAACCTCTGAAGCTAAAGCATTAGAGAAGGTGGAGGATAAGTCCAAAGTTGCCAGGGCATTGAAGGAAAGTGTTCTCCATCAAATATGTGAGGCAAAGCCATTGGCTTTGATCATTGATTGGAATTCACTCCTGTCTAACAAAAAGAAGAGAACTGTGATCATAGCCCTGGCAAAGTTTGCACCAGAATCACAGGGCACACTGAATTTTAAGTTTGGAACTTCTTCTGGAGCTGTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.6

Weight (kDa)

9.56

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 148, 229
AcuI CTGAAG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 2 cut(s) 77, 192
AluBI AGCT 2 cut(s) 38, 257
AluI AGCT 2 cut(s) 38, 257
ApoI RAATTY 2 cut(s) 148, 229
Asp700I GAANNNNTTC 2 cut(s) 96, 247
BaeGI GKGCMC 1 cut(s) 224
BccI CCATC 1 cut(s) 111
BciT130I CCWGG 2 cut(s) 79, 194
BclI TGATCA 2 cut(s) 135, 183
Bme1390I CCNGG 2 cut(s) 79, 194
BmrFI CCNGG 2 cut(s) 79, 194
BsaJI CCNNGG 2 cut(s) 78, 192
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
BseBI CCWGG 2 cut(s) 79, 194
BseDI CCNNGG 2 cut(s) 78, 192
BseSI GKGCMC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 135, 183
BssECI CCNNGG 2 cut(s) 78, 192
BssMI GATC 2 cut(s) 135, 183
Bst2UI CCWGG 2 cut(s) 79, 194
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 264
BstKTI GATC 2 cut(s) 138, 186
BstMBI GATC 2 cut(s) 135, 183
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 2 cut(s) 79, 194
BstSCI CCNGG 2 cut(s) 77, 192
BstSLI GKGCMC 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
CviJI RGCY 6 cut(s) 21, 38, 124, 131, 191, 257
CviKI_1 RGCY 6 cut(s) 21, 38, 124, 131, 191, 257
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 137, 185
DpnII GATC 2 cut(s) 135, 183
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 77, 192
FaiI YATR 2 cut(s) 112, 188
FbaI TGATCA 2 cut(s) 135, 183
HinfI GANTC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 252
HpyAV CCTTC 2 cut(s) 46, 82
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 264
Ksp22I TGATCA 2 cut(s) 135, 183
Kzo9I GATC 2 cut(s) 135, 183
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 9 cut(s) 36, 64, 91, 170, 179, 203, 206, 222, 237
MalI GATC 2 cut(s) 137, 185
MboI GATC 2 cut(s) 135, 183
MboII GAAGA 2 cut(s) 184, 240
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 2 cut(s) 148, 229
MnlI CCTC 3 cut(s) 40, 52, 109
MroXI GAANNNNTTC 2 cut(s) 96, 247
MseI TTAA 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 79, 194
MvaI CCWGG 2 cut(s) 79, 194
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 2 cut(s) 135, 183
PdmI GAANNNNTTC 2 cut(s) 96, 247
PfeI GAWTC 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 77, 192
PspGI CCWGG 2 cut(s) 77, 192
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 2 cut(s) 135, 183
ScrFI CCNGG 2 cut(s) 79, 194
SduI GDGCHC 1 cut(s) 224
SetI ASST 4 cut(s) 32, 40, 57, 259
SgeI CNNG 8 cut(s) 35, 90, 91, 169, 205, 206, 221, 230
Sse9I AATT 2 cut(s) 148, 229
StyD4I CCNGG 2 cut(s) 77, 192
TaaI ACNGT 1 cut(s) 181
TasI AATT 2 cut(s) 148, 229
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 231
XapI RAATTY 2 cut(s) 148, 229
XmnI GAANNNNTTC 2 cut(s) 96, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.