Rh6CG206200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001416
Physical Location & Seq
Forward (+)
34332015 .. 34332410
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG206200.1

Sequence Viewer

Length: 396 bp
ATGGTGATGAAGCAGGAAGAAGATGCAAATTCTTTGCTATCATTTGGTTATGTAGGTCCCAATACAGTGTCTTCAGAAAAAGTGGTTGGGTGTTCGAAAAGTAATATCGCTGCTGGTATTGAGGTTTCAAATCTGAGATTAAATGAAGCATCAAGTTCCAAGGATTCTACTTCTGATGAACAGAGTAGATGCAATCTTTGTGATGATGTACTGGTTGATGGCAGTAGAGACAATAATGTTGTTGCAGACAAAGTTAGTACTAGAAGTATGGAAGCAATAATTGGTATTAAGAATGCTGGTGATGGGGTTAAGTCGGTAGAAAAAAACGCCGCAAATATTGCATGCCGACAGTCTATTAGAAGAAAGAGACTCTTCATATGGCAAATCATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.2

Weight (kDa)

6.28

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 330
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 2 cut(s) 210, 259
AgsI TTSAA 1 cut(s) 129
AjuI GAANNNNNNNTTGG 4 cut(s) 69, 101, 264, 296
Alw26I GTCTC 2 cut(s) 222, 361
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 16, 311
AsuII TTCGAA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 97
BccI CCATC 2 cut(s) 212, 296
BcoDI GTCTC 2 cut(s) 222, 361
BfaI CTAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 111, 330
BlsI GCNGC 2 cut(s) 112, 331
BmcAI AGTACT 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 3 cut(s) 13, 158, 179
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 97
BslFI GGGAC 1 cut(s) 42
BsmAI GTCTC 2 cut(s) 222, 361
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 95
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 95
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 67, 351
Bst6I CTCTTC 1 cut(s) 377
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 134
BstMAI GTCTC 2 cut(s) 222, 361
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 209, 258
CviAII CATG 1 cut(s) 342
CviQI GTAC 2 cut(s) 209, 258
DdeI CTNAG 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 345
FaiI YATR 5 cut(s) 51, 269, 343, 377, 379
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 1 cut(s) 42
FatI CATG 1 cut(s) 341
FauNDI CATATG 1 cut(s) 377
Fnu4HI GCNGC 2 cut(s) 111, 330
Fsp4HI GCNGC 2 cut(s) 111, 330
FspBI CTAG 1 cut(s) 261
GluI GCNGC 2 cut(s) 111, 330
Hin1II CATG 1 cut(s) 345
HinfI GANTC 2 cut(s) 164, 369
HphI GGTGA 2 cut(s) 16, 311
Hpy188I TCNGA 4 cut(s) 76, 135, 175, 395
HpyCH4III ACNGT 2 cut(s) 67, 351
HpyCH4V TGCA 4 cut(s) 26, 192, 245, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 345
LpnPI CCDG 3 cut(s) 99, 197, 282
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 3 cut(s) 13, 158, 179
MaeI CTAG 1 cut(s) 261
MboII GAAGA 5 cut(s) 29, 32, 63, 364, 372
MluCI AATT 2 cut(s) 28, 279
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 1 cut(s) 115
MseI TTAA 3 cut(s) 140, 288, 309
Mva1269I GAATGC 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeI CATATG 1 cut(s) 377
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 1 cut(s) 58
NspI RCATGY 1 cut(s) 345
NspV TTCGAA 1 cut(s) 95
PaeI GCATGC 1 cut(s) 345
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 112, 331
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
RsaI GTAC 2 cut(s) 210, 259
RsaNI GTAC 2 cut(s) 209, 258
SaqAI TTAA 3 cut(s) 140, 288, 309
SatI GCNGC 2 cut(s) 111, 330
Sau96I GGNCC 1 cut(s) 56
ScaI AGTACT 1 cut(s) 259
SchI GAGTC 1 cut(s) 363
SetI ASST 2 cut(s) 58, 126
SfaNI GCATC 3 cut(s) 13, 158, 179
SfuI TTCGAA 1 cut(s) 95
SgeI CNNG 8 cut(s) 26, 126, 165, 172, 224, 273, 309, 354
SinI GGWCC 1 cut(s) 56
SphI GCATGC 1 cut(s) 345
Sse9I AATT 2 cut(s) 28, 279
SsiI CCGC 1 cut(s) 330
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 67, 351
TaqI TCGA 1 cut(s) 95
TasI AATT 2 cut(s) 28, 279
TatI WGTACW 2 cut(s) 208, 257
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 3 cut(s) 140, 288, 309
Tru9I TTAA 3 cut(s) 140, 288, 309
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 23, 159, 192, 364
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 345
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.