Rorug06G0086100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001416
Physical Location & Seq
Reverse (-)
11543168 .. 11544635
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0086100.1

Sequence Viewer

Length: 429 bp
ATGGTAAAACGTTGCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTAAGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGGGTGTGGATATGTTTGGAAAGAGGATTGGGTTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGGAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGGCTTATGCTGTTCTTACTGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACCGCAATCCGTGAGGTGGAAGAAGAGACTGGCATATGCCTAAAACAAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.58

Weight (kDa)

4.92

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 76 - 137 2.7e-09 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 1 cut(s) 225
AciI CCGC 2 cut(s) 225, 375
AclI AACGTT 1 cut(s) 10
AclWI GGATC 1 cut(s) 323
AcuI CTGAAG 2 cut(s) 74, 179
AfaI GTAC 1 cut(s) 303
AfeI AGCGCT 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 52
Aor51HI AGCGCT 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 234
BfoI RGCGCY 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 204, 373
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 79, 327, 406
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 388
BseNI ACTGG 3 cut(s) 79, 327, 406
Bsh1236I CGCG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 392
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 2 cut(s) 225, 375
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 204, 373
BspPI GGATC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 371
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 3 cut(s) 79, 327, 406
BssAI RCCGGY 1 cut(s) 229
BssMI GATC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 223, 333
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 1 cut(s) 315
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 223, 333
CaiI CAGNNNCTG 1 cut(s) 52
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 227
CpoI CGGWCCG 1 cut(s) 227
Csp6I GTAC 1 cut(s) 302
CspI CGGWCCG 1 cut(s) 227
CviAII CATG 1 cut(s) 61
CviJI RGCY 5 cut(s) 52, 101, 233, 239, 272
CviKI_1 RGCY 5 cut(s) 52, 101, 233, 239, 272
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 83
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 227
Eco47III AGCGCT 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 74, 179
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 64
FaiI YATR 7 cut(s) 62, 134, 248, 276, 320, 407, 409
FatI CATG 1 cut(s) 60
FauNDI CATATG 1 cut(s) 407
FokI GGATG 1 cut(s) 359
GlaI GCGC 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 344
HaeII RGCGCY 1 cut(s) 24
HapII CCGG 1 cut(s) 230
HhaI GCGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 3 cut(s) 29, 79, 257
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 105, 159, 262
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 306
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 15, 221
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 18
MaeII ACGT 1 cut(s) 10
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 3 cut(s) 67, 404, 407
MluCI AATT 1 cut(s) 117
MmeI TCCRAC 2 cut(s) 289, 324
MnlI CCTC 3 cut(s) 138, 256, 379
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 1 cut(s) 42
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 225
NdeI CATATG 1 cut(s) 407
NdeII GATC 1 cut(s) 315
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 2 cut(s) 204, 373
NmeAIII GCCGAG 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 3 cut(s) 29, 79, 257
Psp1406I AACGTT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 204, 373
PspPI GGNCC 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 52
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
Rsr2I CGGWCCG 1 cut(s) 227
RsrII CGGWCCG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 207
SetI ASST 7 cut(s) 13, 204, 211, 241, 297, 307, 390
SfcI CTRYAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 227
Sse9I AATT 1 cut(s) 117
SsiI CCGC 2 cut(s) 225, 375
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 13
TasI AATT 1 cut(s) 117
TfiI GAWTC 3 cut(s) 29, 79, 257
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.