Rorug06G0085800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001416
Physical Location & Seq
Forward (+)
11525403 .. 11526788
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0085800.1

Sequence Viewer

Length: 285 bp
ATGTTCGATACTTCAAGATTGACTCCCTCCGTCGCCCCAGACGCCGCCGCCATCGCCGAGTCCACCAAACACCGACTTGCTACTCAAGATTATATCGGAGGATCGAAAGAGTGTGAATTCCCAGTTGGATCCTTCGATTTTGTTGCCCAATTTGGGTTTAAACGACGCCGGATCGGGCGGCGAGTCGAGGGTTTTGGAGGGAAGGGGAAGTGGGGAAAAGGGCTGGAGCAATGGGGTTTTGTTAGTTTCCAAGGATCCGGAGAATCTCCGGGAAATTGCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.19

Weight (kDa)

9.14

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 257
AciI CCGC 3 cut(s) 45, 48, 178
AclWI GGATC 6 cut(s) 109, 123, 136, 179, 249, 262
AcsI RAATTY 1 cut(s) 116
AcyI GRCGYC 2 cut(s) 42, 166
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AlwI GGATC 6 cut(s) 109, 123, 136, 179, 249, 262
Aor13HI TCCGGA 1 cut(s) 257
ApoI RAATTY 1 cut(s) 116
AsuC2I CCSGG 1 cut(s) 270
BamHI GGATCC 2 cut(s) 128, 254
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BcnI CCSGG 1 cut(s) 270
BisI GCNGC 3 cut(s) 45, 48, 179
BlsI GCNGC 3 cut(s) 46, 49, 180
Bme1390I CCNGG 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 130, 256
BmrFI CCNGG 1 cut(s) 270
BmrI ACTGGG 1 cut(s) 116
BmuI ACTGGG 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 270
BsaHI GRCGYC 2 cut(s) 42, 166
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 236
BseAI TCCGGA 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 169, 258, 269
BslI CCNNNNNNNGG 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 257
Bsp143I GATC 4 cut(s) 101, 128, 171, 254
BspACI CCGC 3 cut(s) 45, 48, 178
BspEI TCCGGA 1 cut(s) 257
BspLI GGNNCC 2 cut(s) 130, 256
BspPI GGATC 6 cut(s) 109, 123, 136, 179, 249, 262
BsrDI GCAATG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 4 cut(s) 101, 128, 171, 254
BssNI GRCGYC 2 cut(s) 42, 166
BssT1I CCWWGG 1 cut(s) 250
BstACI GRCGYC 2 cut(s) 42, 166
BstKTI GATC 4 cut(s) 104, 131, 174, 257
BstMBI GATC 4 cut(s) 101, 128, 171, 254
BstMWI GCNNNNNNNGC 2 cut(s) 41, 53
BstSCI CCNGG 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 128, 254
BstYI RGATCY 2 cut(s) 128, 254
BtgZI GCGATG 1 cut(s) 37
CseI GACGC 2 cut(s) 50, 174
CviJI RGCY 1 cut(s) 223
CviKI_1 RGCY 1 cut(s) 223
DpnI GATC 4 cut(s) 103, 130, 173, 256
DpnII GATC 4 cut(s) 101, 128, 171, 254
DraI TTTAAA 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaiI YATR 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 45, 48, 179
Fsp4HI GCNGC 3 cut(s) 45, 48, 179
GluI GCNGC 3 cut(s) 45, 48, 179
GsuI CTGGAG 1 cut(s) 245
HapII CCGG 3 cut(s) 169, 258, 269
HgaI GACGC 2 cut(s) 50, 174
Hin1I GRCGYC 2 cut(s) 42, 166
HinfI GANTC 4 cut(s) 22, 59, 183, 263
HpaII CCGG 3 cut(s) 169, 258, 269
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 3 cut(s) 15, 86, 258
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 2 cut(s) 35, 168
HpyAV CCTTC 2 cut(s) 142, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 53
Hsp92I GRCGYC 2 cut(s) 42, 166
Kpn2I TCCGGA 1 cut(s) 257
Kzo9I GATC 4 cut(s) 101, 128, 171, 254
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 51, 135, 182, 209, 271
MalI GATC 4 cut(s) 103, 130, 173, 256
MboI GATC 4 cut(s) 101, 128, 171, 254
MflI RGATCY 2 cut(s) 128, 254
MluCI AATT 3 cut(s) 116, 149, 274
MlyI GAGTC 3 cut(s) 16, 68, 192
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 4 cut(s) 37, 92, 181, 191
MroI TCCGGA 1 cut(s) 257
MseI TTAA 1 cut(s) 159
MspI CCGG 3 cut(s) 169, 258, 269
MspR9I CCNGG 1 cut(s) 270
MssI GTTTAAAC 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 41, 53
NciI CCSGG 1 cut(s) 270
NdeII GATC 4 cut(s) 101, 128, 171, 254
NlaIV GGNNCC 2 cut(s) 130, 256
NmeAIII GCCGAG 1 cut(s) 82
PfeI GAWTC 1 cut(s) 263
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 3 cut(s) 46, 49, 180
PleI GAGTC 3 cut(s) 16, 67, 191
PmeI GTTTAAAC 1 cut(s) 160
PpsI GAGTC 3 cut(s) 16, 67, 191
PspN4I GGNNCC 2 cut(s) 130, 256
PsuI RGATCY 2 cut(s) 128, 254
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 3 cut(s) 45, 48, 179
Sau3AI GATC 4 cut(s) 101, 128, 171, 254
SchI GAGTC 3 cut(s) 16, 68, 192
ScrFI CCNGG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 116, 149, 274
SsiI CCGC 3 cut(s) 45, 48, 178
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 250
TaqI TCGA 4 cut(s) 6, 104, 135, 186
TasI AATT 3 cut(s) 116, 149, 274
TauI GCSGC 3 cut(s) 47, 50, 181
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 19
XapI RAATTY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.