Rorug06G0086000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001416
Physical Location & Seq
Forward (+)
11534176 .. 11534556
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0086000.1

Sequence Viewer

Length: 381 bp
ATGGCGGAGAGAAGTGCGACTCTGGTTAGTCTATGGATAGACGCTGAGTGTCACCATCAGTTGGAAGATAGCTTGCATTTATTTTTTCATTGTCAATATGCTCAAGAGACATGGAATGCTGCATCTCTTAATATTCAGGTGCCTGCTAATATGACGTTCCAAGAGTGCTTCTTGCACTTAGCGAATTCTTTGTCCAAGGATGCTTTTACTAAACTTCTTGTGATTATGTGGGCTATTTGGAAGAATAGGAACAGTCAGTTGTGGGATAATATAAAGCAGCGACCGAGTGAGGTTTCTATGCTTAGTTTGGGATGGCTTCAAGAATTTTCTAAAGCCAATAAAGTATGTATTGGAGGCACCAGACCCCGGCAGCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.59

Weight (kDa)

6.95

Isoelectric Point (pI)

62.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 139, 356
AccB7I CCANNNNNTGG 1 cut(s) 61
AciI CCGC 1 cut(s) 5
AcsI RAATTY 2 cut(s) 184, 323
AfiI CCNNNNNNNGG 2 cut(s) 61, 366
AgsI TTSAA 1 cut(s) 320
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 101
ApeKI GCWGC 3 cut(s) 119, 277, 370
ApoI RAATTY 2 cut(s) 184, 323
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 44
BanI GGYRCC 2 cut(s) 139, 356
BbvI GCAGC 2 cut(s) 106, 289
BccI CCATC 2 cut(s) 63, 306
BcnI CCSGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 101
BisI GCNGC 3 cut(s) 120, 278, 371
BlsI GCNGC 3 cut(s) 121, 279, 372
Bme1390I CCNGG 1 cut(s) 367
BmiI GGNNCC 2 cut(s) 141, 358
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 2 cut(s) 131, 190
BpuEI CTTGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 195, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 366
BseDI CCNNGG 2 cut(s) 195, 365
BseGI GGATG 2 cut(s) 205, 317
BseLI CCNNNNNNNGG 2 cut(s) 61, 366
BseMII CTCAG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 106, 289
Bsh1285I CGRYCG 1 cut(s) 284
BshNI GGYRCC 2 cut(s) 139, 356
BsiEI CGRYCG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 61, 366
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 121
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 141, 358
BspT107I GGYRCC 2 cut(s) 139, 356
BssECI CCNNGG 2 cut(s) 195, 365
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 74, 144
BstDEI CTNAG 3 cut(s) 45, 178, 302
BstF5I GGATG 2 cut(s) 205, 317
BstMAI GTCTC 1 cut(s) 101
BstMCI CGRYCG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 106, 289
BtsCI GGATG 2 cut(s) 205, 317
Cac8I GCNNGC 2 cut(s) 74, 144
CseI GACGC 1 cut(s) 50
CviAII CATG 2 cut(s) 111, 378
CviJI RGCY 4 cut(s) 72, 233, 316, 335
CviKI_1 RGCY 4 cut(s) 72, 233, 316, 335
DdeI CTNAG 3 cut(s) 45, 178, 302
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 114, 381
FaiI YATR 9 cut(s) 34, 99, 112, 152, 227, 272, 299, 346, 379
FatI CATG 2 cut(s) 110, 377
Fnu4HI GCNGC 3 cut(s) 120, 278, 371
FokI GGATG 2 cut(s) 212, 324
Fsp4HI GCNGC 3 cut(s) 120, 278, 371
GluI GCNGC 3 cut(s) 120, 278, 371
HapII CCGG 1 cut(s) 367
HgaI GACGC 1 cut(s) 50
Hin1II CATG 2 cut(s) 114, 381
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 367
HphI GGTGA 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 104, 320
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 3 cut(s) 76, 122, 175
HpyF3I CTNAG 3 cut(s) 45, 178, 302
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 2 cut(s) 114, 381
LpnPI CCDG 4 cut(s) 8, 122, 156, 373
Lsp1109I GCAGC 2 cut(s) 106, 289
LweI GCATC 2 cut(s) 131, 190
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 2 cut(s) 77, 253
MluCI AATT 2 cut(s) 184, 323
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 2 cut(s) 283, 347
MseI TTAA 1 cut(s) 129
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 367
Mva1269I GAATGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 367
NlaIII CATG 2 cut(s) 114, 381
NlaIV GGNNCC 2 cut(s) 141, 358
NmuCI GTSAC 1 cut(s) 50
PctI GAATGC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 3 cut(s) 121, 279, 372
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 141, 358
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 120, 278, 371
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 367
SetI ASST 4 cut(s) 74, 141, 158, 294
SfaNI GCATC 2 cut(s) 131, 190
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 2 cut(s) 184, 323
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 158
TaqII GACCGA 1 cut(s) 298
TasI AATT 2 cut(s) 184, 323
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 3 cut(s) 119, 277, 370
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 61
XapI RAATTY 2 cut(s) 184, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.