Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001416

Physical Location & Seq

Genomic Coordinates Forward (+)

38511617 .. 38513575

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAAATTGTCCTCCTGGTCATAGGCAAGGATCCTGAAAAGAAGAATATGCATATGCTAGTTGGTGACAATGCTAGCACAGATGGATTCGGAATGCAGGAAAGCATCTCAGGTGAGAAGGTTGATGAAAGTCCCGATACTGGCATATATGGTTCTGAGGAAGAAAACCACACACTAGACTCCGAAGTGACTGAGGAAATACTTGATCTCAATAATCTTGGTTCTGTGGCCACCTGTTCTGCTGATCTCAATAATATTGGTTCTGCCTCAGAGGTTATTGTTTCTTCATCTCTTGGTCCCAATATAGTGTCTTCAGAAAAAGTGGTTGGTTCGAAAAGTAATATCGCTGCTGGTATTGAGGTTTCAAATCTGAGATTAAATGAAGCATCAAGTTCCAAGGATTCTACTTCTGATGAACAGAGTAGATGCAATCTTTGTGATGTACTGGTTGATGGCAGTAGAGACGATAATATTGTTGCAGACAAAGTTAGTACTAGAAGTATGGAAGCAATAATTGGTATTAAGAATGCTGGTGATGGGGTTAAGTCAGTAGAAAAAAACGCCACAAATATTGGATGCCGACAGTCTATTAGAAGAAAGAGACTTCACATGGCAAATCATTTTCTGATATTTCTCATAGCAGGAAAGAAAAGACATCTGTCTGTGCAAGAAGGTAGAGGCTTGAAGGCAGGAAGAGTCTCAGGCTTGAAGTTCGAAGGTGTAAATGCTGGCATAGATGGTTTTGCTGATACTCCTGCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

26.95

Weight (kDa)

5.14

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76840
fragaria_vesca	FvH4_2g13360 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370
rosa_chinensis	RchiOBHm_Chr6g0274911
rosa_laevigata	RLG00000013508 RLG00000013512
rosa_multiflora	Rmu_sc0007760.1_g000001 Rmu_sc0020413.1_g000002 Rmu_sc0042123.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193800 Rroxscaffold_7G00193810 Rroxscaffold_7G00193840
rosa_rugosa	Rorug06G0085700 Rorug06G0085800 Rorug06G0085900 Rorug06G0086000 Rorug06G0086100 Rorug06G0086300
rosa_samantha	Rh6AG200800 Rh6AG201100 Rh6AG201200 Rh6BG204500 Rh6BG204800 Rh6CG205900 Rh6CG206100 Rh6CG206200 Rh6DG196100 Rh6DG196300 Rh7BG146800
rosa_wichuraiana	Rw6G017480 Rw6G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	26, 39
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	2 cut(s)	444, 493
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	366, 685, 709
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	4 cut(s)	309, 341, 498, 530
Alw26I	GTCTC	3 cut(s)	456, 595, 703
AlwI	GGATC	2 cut(s)	26, 39
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	347, 758, 761
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	77, 125, 545
AsuII	TTCGAA	2 cut(s)	332, 714
AsuNHI	GCTAGC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	334, 745, 748
BccI	CCATC	4 cut(s)	77, 446, 530, 731
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	3 cut(s)	456, 595, 703
BfaI	CTAG	4 cut(s)	59, 75, 176, 495
BisI	GCNGC	3 cut(s)	348, 759, 762
BlsI	GCNGC	3 cut(s)	349, 760, 763
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	33, 298
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	4 cut(s)	114, 395, 416, 566
BmtI	GCTAGC	1 cut(s)	78
BoxI	GACNNNNGTC	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	303
Bpu14I	TTCGAA	2 cut(s)	332, 714
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	145, 450
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	581
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	6 cut(s)	123, 147, 183, 282, 362, 714
BseNI	ACTGG	2 cut(s)	145, 450
BseXI	GCAGC	3 cut(s)	334, 745, 748
BshFI	GGCC	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	117, 282
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	3 cut(s)	456, 595, 703
BsmBI	CGTCTC	1 cut(s)	456
BsmFI	GGGAC	2 cut(s)	117, 282
BsmI	GAATGC	2 cut(s)	99, 532
BsnI	GGCC	1 cut(s)	230
Bsp119I	TTCGAA	2 cut(s)	332, 714
Bsp143I	GATC	3 cut(s)	31, 205, 244
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	6 cut(s)	122, 148, 184, 281, 363, 713
BspLI	GGNNCC	2 cut(s)	33, 298
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	26, 39
BspT104I	TTCGAA	2 cut(s)	332, 714
BsrI	ACTGG	2 cut(s)	145, 450
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	3 cut(s)	31, 205, 244
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	1 cut(s)	688
BstBI	TTCGAA	2 cut(s)	332, 714
BstC8I	GCNNGC	2 cut(s)	76, 730
BstDEI	CTNAG	6 cut(s)	109, 156, 192, 268, 371, 700
BstF5I	GGATG	1 cut(s)	581
BstKTI	GATC	3 cut(s)	34, 208, 247
BstMAI	GTCTC	3 cut(s)	456, 595, 703
BstMBI	GATC	3 cut(s)	31, 205, 244
BstNI	CCWGG	1 cut(s)	17
BstPAI	GACNNNNGTC	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	334, 745, 748
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	581
Cac8I	GCNNGC	2 cut(s)	76, 730
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	443, 492
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	1 cut(s)	610
CviJI	RGCY	3 cut(s)	230, 681, 705
CviKI_1	RGCY	3 cut(s)	230, 681, 705
CviQI	GTAC	2 cut(s)	443, 492
DdeI	CTNAG	6 cut(s)	109, 156, 192, 268, 371, 700
DpnI	GATC	3 cut(s)	33, 207, 246
DpnII	GATC	3 cut(s)	31, 205, 244
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	1 cut(s)	613
FaqI	GGGAC	2 cut(s)	117, 282
FatI	CATG	1 cut(s)	609
FauNDI	CATATG	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	348, 759, 762
FokI	GGATG	1 cut(s)	588
Fsp4HI	GCNGC	3 cut(s)	348, 759, 762
FspBI	CTAG	4 cut(s)	59, 75, 176, 495
GluI	GCNGC	3 cut(s)	348, 759, 762
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	613
HinfI	GANTC	4 cut(s)	87, 179, 401, 696
HphI	GGTGA	3 cut(s)	77, 125, 545
Hpy188I	TCNGA	8 cut(s)	92, 157, 184, 271, 316, 372, 412, 627
Hpy188III	TCNNGA	2 cut(s)	35, 134
HpyAV	CCTTC	4 cut(s)	112, 665, 679, 710
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4V	TGCA	5 cut(s)	52, 97, 429, 479, 667
HpyF3I	CTNAG	6 cut(s)	109, 156, 192, 268, 371, 700
Hsp92II	CATG	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	31, 205, 244
Lsp1109I	GCAGC	3 cut(s)	334, 745, 748
LweI	GCATC	4 cut(s)	114, 395, 416, 566
MaeI	CTAG	4 cut(s)	59, 75, 176, 495
MaeIII	GTNAC	2 cut(s)	65, 187
MalI	GATC	3 cut(s)	33, 207, 246
MboI	GATC	3 cut(s)	31, 205, 244
MboII	GAAGA	6 cut(s)	55, 173, 276, 303, 606, 705
MflI	RGATCY	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	2 cut(s)	6, 513
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	173, 705
MnlI	CCTC	7 cut(s)	23, 151, 187, 265, 277, 352, 671
Mox20I	TGGCCA	1 cut(s)	230
Mph1103I	ATGCAT	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	3 cut(s)	377, 522, 543
Msp20I	TGGCCA	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	2 cut(s)	99, 532
MvaI	CCWGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	54
NdeII	GATC	3 cut(s)	31, 205, 244
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	613
NlaIV	GGNNCC	2 cut(s)	33, 298
NmuCI	GTSAC	2 cut(s)	65, 187
NsiI	ATGCAT	1 cut(s)	54
NspV	TTCGAA	2 cut(s)	332, 714
PctI	GAATGC	2 cut(s)	99, 532
PfeI	GAWTC	2 cut(s)	87, 401
PkrI	GCNGC	3 cut(s)	349, 760, 763
PleI	GAGTC	2 cut(s)	173, 704
PpsI	GAGTC	2 cut(s)	173, 704
PshAI	GACNNNNGTC	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	33, 298
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	444, 493
RsaNI	GTAC	2 cut(s)	443, 492
SaqAI	TTAA	3 cut(s)	377, 522, 543
SatI	GCNGC	3 cut(s)	348, 759, 762
Sau3AI	GATC	3 cut(s)	31, 205, 244
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	2 cut(s)	173, 705
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	7 cut(s)	115, 123, 236, 276, 363, 676, 721
SfaNI	GCATC	4 cut(s)	114, 395, 416, 566
SfuI	TTCGAA	2 cut(s)	332, 714
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	2 cut(s)	6, 513
SspI	AATATT	3 cut(s)	256, 472, 571
SspMI	CTAG	4 cut(s)	59, 75, 176, 495
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	585
TaqI	TCGA	2 cut(s)	332, 714
TasI	AATT	2 cut(s)	6, 513
TatI	WGTACW	2 cut(s)	442, 491
TfiI	GAWTC	2 cut(s)	87, 401
Tru1I	TTAA	3 cut(s)	377, 522, 543
Tru9I	TTAA	3 cut(s)	377, 522, 543
TseFI	GTSAC	2 cut(s)	65, 187
TseI	GCWGC	3 cut(s)	347, 758, 761
Tsp45I	GTSAC	2 cut(s)	65, 187
TspDTI	ATGAA	5 cut(s)	17, 141, 276, 396, 429
VpaK11BI	GGWCC	1 cut(s)	296
XspI	CTAG	4 cut(s)	59, 75, 176, 495
ZrmI	AGTACT	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.