Rh6AG201100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001416
Physical Location & Seq
Forward (+)
36095654 .. 36096902
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG201100.1

Sequence Viewer

Length: 372 bp
ATGGGGGAGGAGAAAGACTTTCCTTTTCCATCAGCTCTGATGGCCATAGACACACACAATAATAATGATGCAGCAGACATGACTGGTCCTGGAGGCATGGAAGTTAGTAAGGAGAATACTGTGGATGGAACTAAGATGGTTGAACAAGCCACCAATCAGTTCTGCGGTCTACTGGAAGCAAGGAGCACATCAGTGAGTCCTTTGCACCATGTTGTAGTCTCATGTGGAGATCTATGTGAATTAATAGGGTTTAGTAAGGCTGACAGTGAAAGTACAAAAGAAAAGGTGGCAACTGATGCTTGTTTGGGAGATCAACCATCAGAAAATTTGAGAGTTTCTGAAGTCGACCTAGAATCTCATATAAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.15

Weight (kDa)

4.34

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 169, 345
AciI CCGC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 1 cut(s) 274
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 88
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 223
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 325
AseI ATTAAT 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 83
BccI CCATC 5 cut(s) 34, 37, 119, 130, 325
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 350
BglII AGATCT 1 cut(s) 229
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 58, 286
BpmI CTGGAG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 88, 177
BseBI CCWGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 88, 177
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 223
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 229, 310
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 44
BsrI ACTGG 2 cut(s) 88, 177
BssMI GATC 2 cut(s) 229, 310
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 121, 266
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 232, 313
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 229, 310
BstMWI GCNNNNNNNGC 2 cut(s) 41, 296
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 198, 271
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 273
CviAII CATG 4 cut(s) 79, 97, 209, 222
CviJI RGCY 4 cut(s) 35, 44, 149, 260
CviKI_1 RGCY 4 cut(s) 35, 44, 149, 260
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 231, 312
DpnII GATC 2 cut(s) 229, 310
EaeI YGGCCR 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 88
FaeI CATG 4 cut(s) 82, 100, 212, 225
FaiI YATR 8 cut(s) 47, 80, 98, 210, 223, 235, 360, 362
FatI CATG 4 cut(s) 78, 96, 208, 221
FblI GTMKAC 2 cut(s) 169, 345
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 350
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 44
Hin1II CATG 4 cut(s) 82, 100, 212, 225
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 2 cut(s) 196, 353
Hpy166II GTNNAC 2 cut(s) 170, 346
Hpy188I TCNGA 3 cut(s) 39, 322, 340
Hpy8I GTNNAC 2 cut(s) 170, 346
HpyCH4III ACNGT 2 cut(s) 121, 266
HpyCH4V TGCA 2 cut(s) 71, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 296
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 4 cut(s) 82, 100, 212, 225
Kzo9I GATC 2 cut(s) 229, 310
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 69, 75, 102, 158
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 2 cut(s) 58, 286
MaeI CTAG 1 cut(s) 350
MalI GATC 2 cut(s) 231, 312
MboI GATC 2 cut(s) 229, 310
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 2 cut(s) 239, 325
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 1 cut(s) 86
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 2 cut(s) 191, 363
Msp20I TGGCCA 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 41, 296
NdeII GATC 2 cut(s) 229, 310
NlaIII CATG 4 cut(s) 82, 100, 212, 225
OliI CACNNNNGTG 1 cut(s) 191
PfeI GAWTC 1 cut(s) 353
PfoI TCCNGGA 1 cut(s) 88
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 2 cut(s) 191, 363
SalI GTCGAC 1 cut(s) 344
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 229, 310
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 188
SetI ASST 3 cut(s) 37, 288, 351
SfaNI GCATC 2 cut(s) 58, 286
SinI GGWCC 1 cut(s) 86
SmiMI CAYNNNNRTG 2 cut(s) 191, 363
Sse9I AATT 2 cut(s) 239, 325
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 121, 266
TaqI TCGA 1 cut(s) 345
TasI AATT 2 cut(s) 239, 325
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 2 cut(s) 198, 271
TseI GCWGC 1 cut(s) 71
TspRI CASTG 2 cut(s) 198, 271
VpaK11BI GGWCC 1 cut(s) 86
VspI ATTAAT 1 cut(s) 242
XapI RAATTY 1 cut(s) 325
XmiI GTMKAC 2 cut(s) 169, 345
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.