Rh6CG206100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001416
Physical Location & Seq
Forward (+)
34330509 .. 34331635
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG206100.1

Sequence Viewer

Length: 630 bp
ATGCATGGAAGATGGGTGAAGATTCAAGTTCTGAGGATATCCGAGGAGGAGAAAGCCTTTCCTTTTCCATCAGCTCTGATGGCCATAGACACACACAATAATGATGATGCAGCAGGCATAACTGGTCCTGGAGGCATGGAAGTTAGTAAGGAGAATACTGTGGATGGAACTAAGATGGTTGACCAAGAACTGATTGGTGGCTGCGGTCTACTGGAAGCAAGGAGCACATCAGTGAGTCCTTTGCACCATGTTGTAGTCTCATGCAAGGATCCTGAAAAGAAGAATATGCATATGCTAGTTGGTGACAATGCTAGCACAGATGGATTCGGAATGCAGGAAAGCATCTCAGGTGAGAAGGTTGATGAAAGTCTCGATACTGGCATATATGGTTCTGGGGAAGAAAACCACACACTAAACTCCGAAGAGACTGAGGAAATACTTGATCTCAATAATATTGGTTCTGTGGCCACCTGTTCTGCTGATTCCACCGAACCCTCTTCACTAAAACCTGAAATTGGTGTTGTTTGTCCTACTGATTCTCCAGTTACTGCTACTAATTATGGTAAATGCTCCTTGCATGAAGGCGAATACACCACCTCTTTTTATAATGACAATAGTGATGATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.36

Weight (kDa)

4.35

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccI GTMKAC 1 cut(s) 208
AciI CCGC 1 cut(s) 204
AclWI GGATC 2 cut(s) 263, 276
AcoI YGGCCR 2 cut(s) 81, 465
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 127
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 3 cut(s) 262, 374, 419
AlwI GGATC 2 cut(s) 263, 276
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 2 cut(s) 81, 465
ApeKI GCWGC 2 cut(s) 110, 201
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 28, 314, 362
AsuNHI GCTAGC 1 cut(s) 311
AvaII GGWCC 1 cut(s) 125
BalI TGGCCA 2 cut(s) 83, 467
BamHI GGATCC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 122, 188
BccI CCATC 6 cut(s) 6, 73, 76, 158, 169, 314
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 3 cut(s) 262, 374, 419
BfaI CTAG 2 cut(s) 296, 312
BisI GCNGC 2 cut(s) 111, 202
BlsI GCNGC 2 cut(s) 112, 203
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 97, 351
BmtI GCTAGC 1 cut(s) 315
BpmI CTGGAG 2 cut(s) 150, 525
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 4 cut(s) 127, 216, 382, 542
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMII CTCAG 3 cut(s) 23, 360, 420
BseNI ACTGG 4 cut(s) 127, 216, 382, 542
BseRI GAGGAG 2 cut(s) 59, 62
BseXI GCAGC 2 cut(s) 122, 188
BshFI GGCC 2 cut(s) 83, 467
BsiHKAI GWGCWC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 3 cut(s) 262, 374, 419
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 2 cut(s) 83, 467
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 268, 442, 622
BspACI CCGC 1 cut(s) 204
BspANI GGCC 2 cut(s) 83, 467
BspCNI CTCAG 3 cut(s) 24, 359, 421
BspLI GGNNCC 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 315
BspPI GGATC 2 cut(s) 263, 276
BsrI ACTGG 4 cut(s) 127, 216, 382, 542
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 3 cut(s) 268, 442, 622
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 417, 502
BstC8I GCNNGC 2 cut(s) 115, 313
BstDEI CTNAG 4 cut(s) 32, 171, 346, 429
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 3 cut(s) 271, 445, 625
BstMAI GTCTC 3 cut(s) 262, 374, 419
BstMBI GATC 3 cut(s) 268, 442, 622
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 122, 188
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 83, 467
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 115, 313
CaiI CAGNNNCTG 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 5 cut(s) 5, 136, 248, 261, 578
CviJI RGCY 5 cut(s) 56, 74, 83, 201, 467
CviKI_1 RGCY 5 cut(s) 56, 74, 83, 201, 467
DdeI CTNAG 4 cut(s) 32, 171, 346, 429
DpnI GATC 3 cut(s) 270, 444, 624
DpnII GATC 3 cut(s) 268, 442, 622
EaeI YGGCCR 2 cut(s) 81, 465
Eam1104I CTCTTC 2 cut(s) 417, 502
EarI CTCTTC 2 cut(s) 417, 502
Eco32I GATATC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 1 cut(s) 39
EcoT22I ATGCAT 2 cut(s) 6, 291
FaeI CATG 5 cut(s) 8, 139, 251, 264, 581
FatI CATG 5 cut(s) 4, 135, 247, 260, 577
FauNDI CATATG 1 cut(s) 291
FblI GTMKAC 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 111, 202
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 111, 202
FspBI CTAG 2 cut(s) 296, 312
GluI GCNGC 2 cut(s) 111, 202
GsuI CTGGAG 2 cut(s) 150, 525
HaeIII GGCC 2 cut(s) 83, 467
Hin1II CATG 5 cut(s) 8, 139, 251, 264, 581
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 5 cut(s) 22, 235, 324, 482, 536
HphI GGTGA 3 cut(s) 28, 314, 362
Hpy166II GTNNAC 2 cut(s) 181, 209
Hpy188I TCNGA 5 cut(s) 33, 43, 78, 329, 421
Hpy188III TCNNGA 2 cut(s) 272, 371
Hpy8I GTNNAC 2 cut(s) 181, 209
HpyAV CCTTC 2 cut(s) 349, 575
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 7 cut(s) 4, 110, 244, 264, 289, 334, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 4 cut(s) 32, 171, 346, 429
Hsp92II CATG 5 cut(s) 8, 139, 251, 264, 581
Kzo9I GATC 3 cut(s) 268, 442, 622
LmnI GCTCC 2 cut(s) 222, 575
Lsp1109I GCAGC 2 cut(s) 122, 188
LweI GCATC 2 cut(s) 97, 351
MaeI CTAG 2 cut(s) 296, 312
MaeIII GTNAC 2 cut(s) 302, 544
MalI GATC 3 cut(s) 270, 444, 624
MboI GATC 3 cut(s) 268, 442, 622
MboII GAAGA 6 cut(s) 21, 31, 292, 410, 434, 489
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 2 cut(s) 83, 467
MluCI AATT 2 cut(s) 513, 556
MluNI TGGCCA 2 cut(s) 83, 467
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 7 cut(s) 27, 37, 40, 125, 424, 505, 607
Mox20I TGGCCA 2 cut(s) 83, 467
Mph1103I ATGCAT 2 cut(s) 6, 291
MscI TGGCCA 2 cut(s) 83, 467
MseI TTAA 1 cut(s) 628
MslI CAYNNNNRTG 2 cut(s) 99, 230
Msp20I TGGCCA 2 cut(s) 83, 467
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeI CATATG 1 cut(s) 291
NdeII GATC 3 cut(s) 268, 442, 622
NheI GCTAGC 1 cut(s) 311
NlaIII CATG 5 cut(s) 8, 139, 251, 264, 581
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 2 cut(s) 6, 291
OliI CACNNNNGTG 1 cut(s) 230
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 22, 324, 482, 536
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 2 cut(s) 112, 203
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 1 cut(s) 268
RseI CAYNNNNRTG 2 cut(s) 99, 230
SaqAI TTAA 1 cut(s) 628
SatI GCNGC 2 cut(s) 111, 202
Sau3AI GATC 3 cut(s) 268, 442, 622
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 227
SetI ASST 6 cut(s) 76, 352, 360, 473, 511, 599
SfaNI GCATC 2 cut(s) 97, 351
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 99, 230
Sse9I AATT 2 cut(s) 513, 556
SsiI CCGC 1 cut(s) 204
SspI AATATT 1 cut(s) 454
SspMI CTAG 2 cut(s) 296, 312
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 372
TasI AATT 2 cut(s) 513, 556
TfiI GAWTC 4 cut(s) 22, 324, 482, 536
Tru1I TTAA 1 cut(s) 628
Tru9I TTAA 1 cut(s) 628
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 110, 201
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 378, 594
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 208
XspI CTAG 2 cut(s) 296, 312
Zsp2I ATGCAT 2 cut(s) 6, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.