Rmu_sc0007760.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007760.1
OG0001416
Physical Location & Seq
Forward (+)
1027 .. 1804
778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007760.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atggtgatgaagcaggaagaagatgcaaattctttgctatcatttggttatgtaagtcccaatacagtgtcttcagaaaaagtggttggtttgaaaagtaatatcgctgctggtattgaggtttcaaatctgagattaaatgaagcatcaagttccaaggattctacttctgatgaacagagtagatgcaatctttgtgatgtactggttgatggcagtagagacaataatgttgttgcagacaaagttagtactagaagtatggaagcaataattggtattaagaatgctggtgatggggttaagtcgagacatccgtctgtgcaagaaggtagaggcttgaaggcaggaagagtctcaggcttgaagttcgaaggtgtaaatgctggcatagatggttttgctgatactcctgctgctgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

14.7

Weight (kDa)

5.17

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 2 cut(s) 204, 253
AgsI TTSAA 4 cut(s) 94, 126, 343, 367
AjuI GAANNNNNNNTTGG 4 cut(s) 69, 101, 258, 290
Alw26I GTCTC 3 cut(s) 216, 304, 361
ApeKI GCWGC 3 cut(s) 107, 416, 419
ApoI RAATTY 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 16, 305
AsuII TTCGAA 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 94, 403, 406
BccI CCATC 3 cut(s) 206, 290, 389
BcoDI GTCTC 3 cut(s) 216, 304, 361
BfaI CTAG 1 cut(s) 255
BisI GCNGC 3 cut(s) 108, 417, 420
BlsI GCNGC 3 cut(s) 109, 418, 421
BmcAI AGTACT 1 cut(s) 253
BmsI GCATC 3 cut(s) 13, 155, 176
BoxI GACNNNNGTC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 122, 372
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 3 cut(s) 94, 403, 406
BslFI GGGAC 1 cut(s) 42
BsmAI GTCTC 3 cut(s) 216, 304, 361
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 292
Bsp119I TTCGAA 1 cut(s) 372
BspCNI CTCAG 2 cut(s) 123, 371
BspT104I TTCGAA 1 cut(s) 372
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 2 cut(s) 131, 358
BstF5I GGATG 1 cut(s) 313
BstMAI GTCTC 3 cut(s) 216, 304, 361
BstPAI GACNNNNGTC 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 94, 403, 406
BstV2I GAAGAC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 203, 252
CviJI RGCY 2 cut(s) 339, 363
CviKI_1 RGCY 2 cut(s) 339, 363
CviQI GTAC 2 cut(s) 203, 252
DdeI CTNAG 2 cut(s) 131, 358
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaiI YATR 3 cut(s) 51, 263, 392
FaqI GGGAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 108, 417, 420
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 3 cut(s) 108, 417, 420
FspBI CTAG 1 cut(s) 255
GluI GCNGC 3 cut(s) 108, 417, 420
HinfI GANTC 2 cut(s) 161, 354
HphI GGTGA 2 cut(s) 16, 305
Hpy188I TCNGA 3 cut(s) 76, 132, 172
Hpy188III TCNNGA 1 cut(s) 309
HpyAV CCTTC 3 cut(s) 323, 337, 368
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 4 cut(s) 26, 189, 239, 325
HpyF3I CTNAG 2 cut(s) 131, 358
LpnPI CCDG 6 cut(s) 96, 191, 276, 333, 345, 372
Lsp1109I GCAGC 3 cut(s) 94, 403, 406
LweI GCATC 3 cut(s) 13, 155, 176
MaeI CTAG 1 cut(s) 255
MboII GAAGA 4 cut(s) 29, 32, 63, 363
MluCI AATT 2 cut(s) 28, 273
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 2 cut(s) 112, 329
MseI TTAA 3 cut(s) 137, 282, 303
Mva1269I GAATGC 1 cut(s) 292
NspV TTCGAA 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 3 cut(s) 109, 418, 421
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PshAI GACNNNNGTC 1 cut(s) 316
RsaI GTAC 2 cut(s) 204, 253
RsaNI GTAC 2 cut(s) 203, 252
SaqAI TTAA 3 cut(s) 137, 282, 303
SatI GCNGC 3 cut(s) 108, 417, 420
ScaI AGTACT 1 cut(s) 253
SchI GAGTC 1 cut(s) 363
SetI ASST 3 cut(s) 123, 334, 379
SfaNI GCATC 3 cut(s) 13, 155, 176
SfuI TTCGAA 1 cut(s) 372
Sse9I AATT 2 cut(s) 28, 273
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 308, 372
TasI AATT 2 cut(s) 28, 273
TatI WGTACW 2 cut(s) 202, 251
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 137, 282, 303
Tru9I TTAA 3 cut(s) 137, 282, 303
TscAI CASTG 1 cut(s) 72
TseI GCWGC 3 cut(s) 107, 416, 419
TspDTI ATGAA 3 cut(s) 23, 156, 189
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 72
XapI RAATTY 1 cut(s) 28
XspI CTAG 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.