AT2G01080

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004760
Physical Location & Seq
Forward (+)
77888 .. 79373
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01080.1

Sequence Viewer

Length: 696 bp
ATGCCTCCTCCTCCTTCTAGTTCTAGAGCAGGTCTCAACGGCGATCCGATTGCTGCTCAGAACCAGCAGCCGTATTACCGGAGCTACTCATCGTCGTCGTCGGCGTCGCTGAAGGGATGCTGCTGCTGCTTGTTCTTGCTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATCGTAATACTGGCGGTGAAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGGATCTCCAACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTCTTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGTGAGTCCAGCTTCACGGTCATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCACAGTACGAAGAACGTTGAGGCCACCATCTCCGTCGACAGAGTCAATCTTATGCAAGCCCACGCCGCCGATCTCGTCAGAGATGCTTCCTTGAACGACCGAGTGGAGCTCACAGTCCGCGGAGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGTGTTCAGGTATCCGTGAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTTTGATGGCCTCAGCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

231

Amino Acids

24.76

Weight (kDa)

9.18

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 110 - 208 2.4e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 471
AccII CGCG 2 cut(s) 146, 555
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 9 cut(s) 170, 194, 212, 288, 324, 501, 553, 555, 624
AclI AACGTT 1 cut(s) 450
AclWI GGATC 5 cut(s) 38, 260, 272, 285, 568
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 5 cut(s) 165, 245, 356, 383, 442
AfeI AGCGCT 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 1 cut(s) 529
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 3 cut(s) 150, 415, 426
AluBI AGCT 4 cut(s) 84, 369, 544, 653
AluI AGCT 4 cut(s) 84, 369, 544, 653
Alw21I GWGCWC 2 cut(s) 180, 546
Alw26I GTCTC 2 cut(s) 38, 552
AlwI GGATC 5 cut(s) 38, 260, 272, 285, 568
Aor13HI TCCGGA 1 cut(s) 309
Aor51HI AGCGCT 1 cut(s) 268
AoxI GGCC 2 cut(s) 456, 682
ApeKI GCWGC 7 cut(s) 53, 67, 120, 123, 126, 157, 226
ApoI RAATTY 1 cut(s) 586
AspLEI GCGC 3 cut(s) 157, 269, 436
AsuC2I CCSGG 1 cut(s) 600
AsuHPI GGTGA 5 cut(s) 208, 295, 313, 371, 588
BamHI GGATCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 546
Bbv12I GWGCWC 2 cut(s) 180, 546
BbvCI CCTCAGC 1 cut(s) 686
BbvI GCAGC 7 cut(s) 40, 79, 107, 110, 113, 144, 238
BccI CCATC 3 cut(s) 314, 470, 674
BceAI ACGGC 3 cut(s) 55, 55, 311
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 3 cut(s) 152, 417, 428
BciVI GTATCC 1 cut(s) 622
BcnI CCSGG 1 cut(s) 600
BcoDI GTCTC 2 cut(s) 38, 552
BfaI CTAG 2 cut(s) 18, 24
BfmI CTRYAG 1 cut(s) 224
BfoI RGCGCY 2 cut(s) 158, 270
BfuAI ACCTGC 1 cut(s) 20
BfuI GTATCC 1 cut(s) 622
BisI GCNGC 9 cut(s) 54, 68, 121, 124, 127, 158, 212, 227, 501
BlsI GCNGC 9 cut(s) 55, 69, 122, 125, 128, 159, 213, 228, 502
Bme1390I CCNGG 4 cut(s) 152, 417, 428, 600
BmgBI CACGTC 1 cut(s) 562
BmiI GGNNCC 2 cut(s) 279, 414
BmrFI CCNGG 4 cut(s) 152, 417, 428, 600
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 4 cut(s) 107, 303, 421, 508
BmuI ACTGGG 1 cut(s) 407
BplI GAGNNNNNCTC 4 cut(s) 18, 50, 528, 560
Bpu10I CCTNAGC 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 553
BsaWI WCCGGW 2 cut(s) 78, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 3 cut(s) 171, 195, 402
Bse3DI GCAATG 1 cut(s) 674
BseAI TCCGGA 1 cut(s) 309
BseBI CCWGG 3 cut(s) 152, 417, 428
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 4 cut(s) 122, 306, 318, 436
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 171, 195, 402
BseXI GCAGC 7 cut(s) 40, 79, 107, 110, 113, 144, 238
Bsh1236I CGCG 2 cut(s) 146, 555
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 2 cut(s) 458, 684
BshNI GGYRCC 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 535
BsiHKAI GWGCWC 2 cut(s) 180, 546
BsiSI CCGG 3 cut(s) 79, 310, 599
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 38, 552
BsmBI CGTCTC 1 cut(s) 552
BsmFI GGGAC 1 cut(s) 624
BsnI GGCC 2 cut(s) 458, 684
Bso31I GGTCTC 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 180, 546
Bsp13I TCCGGA 1 cut(s) 309
Bsp1407I TGTACA 2 cut(s) 243, 381
Bsp143I GATC 6 cut(s) 43, 220, 252, 277, 505, 573
BspACI CCGC 9 cut(s) 170, 194, 212, 288, 324, 501, 553, 555, 624
BspANI GGCC 2 cut(s) 458, 684
BspCNI CTCAG 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 2 cut(s) 146, 555
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 2 cut(s) 279, 414
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 5 cut(s) 38, 260, 272, 285, 568
BspQI GCTCTTC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 674
BsrGI TGTACA 2 cut(s) 243, 381
BsrI ACTGG 3 cut(s) 171, 195, 402
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 6 cut(s) 43, 220, 252, 277, 505, 573
BssNI GRCGYC 1 cut(s) 104
Bst2UI CCWGG 3 cut(s) 152, 417, 428
Bst4CI ACNGT 5 cut(s) 359, 376, 412, 440, 550
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 1 cut(s) 104
BstAUI TGTACA 2 cut(s) 243, 381
BstC8I GCNNGC 3 cut(s) 392, 492, 651
BstDEI CTNAG 3 cut(s) 57, 570, 686
BstDSI CCRYGG 1 cut(s) 553
BstF5I GGATG 4 cut(s) 122, 306, 318, 436
BstFNI CGCG 2 cut(s) 146, 555
BstH2I RGCGCY 2 cut(s) 158, 270
BstHHI GCGC 3 cut(s) 157, 269, 436
BstKTI GATC 6 cut(s) 46, 223, 255, 280, 508, 576
BstMAI GTCTC 2 cut(s) 38, 552
BstMBI GATC 6 cut(s) 43, 220, 252, 277, 505, 573
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 6 cut(s) 126, 152, 208, 500, 630, 681
BstNI CCWGG 3 cut(s) 152, 417, 428
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 4 cut(s) 150, 415, 426, 598
BstSFI CTRYAG 1 cut(s) 224
BstUI CGCG 2 cut(s) 146, 555
BstV1I GCAGC 7 cut(s) 40, 79, 107, 110, 113, 144, 238
BstX2I RGATCY 3 cut(s) 252, 277, 573
BstYI RGATCY 3 cut(s) 252, 277, 573
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 2 cut(s) 458, 684
BtgI CCRYGG 1 cut(s) 553
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 4 cut(s) 122, 306, 318, 436
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 395
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 3 cut(s) 392, 492, 651
CciI TCATGA 1 cut(s) 582
CfoI GCGC 3 cut(s) 157, 269, 436
Cfr42I CCGCGG 1 cut(s) 556
CseI GACGC 2 cut(s) 93, 679
Csp6I GTAC 5 cut(s) 164, 244, 355, 382, 441
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 4 cut(s) 247, 379, 391, 583
CviQI GTAC 5 cut(s) 164, 244, 355, 382, 441
DdeI CTNAG 3 cut(s) 57, 570, 686
DpnI GATC 6 cut(s) 45, 222, 254, 279, 507, 575
DpnII GATC 6 cut(s) 43, 220, 252, 277, 505, 573
DraIII CACNNNGTG 1 cut(s) 602
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Ecl136II GAGCTC 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 38
Eco47III AGCGCT 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 544
EcoRII CCWGG 3 cut(s) 150, 415, 426
EcoT38I GRGCYC 1 cut(s) 546
Esp3I CGTCTC 1 cut(s) 552
FaeI CATG 4 cut(s) 250, 382, 394, 586
FaiI YATR 5 cut(s) 248, 380, 392, 488, 584
FaqI GGGAC 1 cut(s) 624
FatI CATG 4 cut(s) 246, 378, 390, 582
FauI CCCGC 1 cut(s) 617
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 9 cut(s) 54, 68, 121, 124, 127, 158, 212, 227, 501
FokI GGATG 4 cut(s) 129, 293, 325, 443
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 9 cut(s) 54, 68, 121, 124, 127, 158, 212, 227, 501
FspAI RTGCGCAY 1 cut(s) 435
FspBI CTAG 2 cut(s) 18, 24
FspI TGCGCA 1 cut(s) 435
GlaI GCGC 3 cut(s) 156, 268, 435
GluI GCNGC 9 cut(s) 54, 68, 121, 124, 127, 158, 212, 227, 501
HaeII RGCGCY 2 cut(s) 158, 270
HaeIII GGCC 2 cut(s) 458, 684
HapII CCGG 3 cut(s) 79, 310, 599
HgaI GACGC 2 cut(s) 93, 679
HhaI GCGC 3 cut(s) 157, 269, 436
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 4 cut(s) 250, 382, 394, 586
Hin6I GCGC 3 cut(s) 155, 267, 434
HinP1I GCGC 3 cut(s) 155, 267, 434
HincII GTYRAC 2 cut(s) 331, 472
HindII GTYRAC 2 cut(s) 331, 472
HinfI GANTC 6 cut(s) 348, 362, 420, 477, 579, 593
HpaII CCGG 3 cut(s) 79, 310, 599
HphI GGTGA 5 cut(s) 208, 295, 313, 371, 588
Hpy166II GTNNAC 3 cut(s) 244, 331, 472
Hpy188I TCNGA 5 cut(s) 48, 60, 347, 515, 578
Hpy188III TCNNGA 4 cut(s) 24, 275, 310, 583
Hpy8I GTNNAC 3 cut(s) 244, 331, 472
Hpy99I CGWCG 6 cut(s) 97, 100, 103, 109, 412, 473
HpyAV CCTTC 2 cut(s) 24, 106
HpyCH4III ACNGT 5 cut(s) 359, 376, 412, 440, 550
HpyCH4IV ACGT 2 cut(s) 450, 561
HpyCH4V TGCA 2 cut(s) 226, 490
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 152, 208, 500, 630, 681
HpyF3I CTNAG 3 cut(s) 57, 570, 686
HpySE526I ACGT 2 cut(s) 450, 561
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 4 cut(s) 250, 382, 394, 586
HspAI GCGC 3 cut(s) 155, 267, 434
Kpn2I TCCGGA 1 cut(s) 309
KspI CCGCGG 1 cut(s) 556
Kzo9I GATC 6 cut(s) 43, 220, 252, 277, 505, 573
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 2 cut(s) 81, 541
Lsp1109I GCAGC 7 cut(s) 40, 79, 107, 110, 113, 144, 238
LweI GCATC 4 cut(s) 107, 303, 421, 508
MaeI CTAG 2 cut(s) 18, 24
MaeII ACGT 2 cut(s) 450, 561
MalI GATC 6 cut(s) 45, 222, 254, 279, 507, 575
MboI GATC 6 cut(s) 43, 220, 252, 277, 505, 573
MboII GAAGA 3 cut(s) 217, 310, 457
MflI RGATCY 3 cut(s) 252, 277, 573
MhlI GDGCHC 2 cut(s) 180, 546
MluCI AATT 2 cut(s) 586, 619
MlyI GAGTC 3 cut(s) 371, 486, 588
MmeI TCCRAC 3 cut(s) 282, 305, 325
MnlI CCTC 9 cut(s) 15, 18, 21, 301, 305, 311, 396, 448, 695
MroI TCCGGA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 311, 377
MspA1I CMGCKG 1 cut(s) 555
MspI CCGG 3 cut(s) 79, 310, 599
MspR9I CCNGG 4 cut(s) 152, 417, 428, 600
MvaI CCWGG 3 cut(s) 152, 417, 428
MvnI CGCG 2 cut(s) 146, 555
MwoI GCNNNNNNNGC 6 cut(s) 126, 152, 208, 500, 630, 681
NciI CCSGG 1 cut(s) 600
NdeII GATC 6 cut(s) 43, 220, 252, 277, 505, 573
NlaIII CATG 4 cut(s) 250, 382, 394, 586
NlaIV GGNNCC 2 cut(s) 279, 414
NsbI TGCGCA 1 cut(s) 435
NspI RCATGY 1 cut(s) 394
PaeI GCATGC 1 cut(s) 394
PagI TCATGA 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfeI GAWTC 3 cut(s) 348, 420, 593
PflFI GACNNNGTC 1 cut(s) 476
PkrI GCNGC 9 cut(s) 55, 69, 122, 125, 128, 159, 213, 228, 502
PleI GAGTC 3 cut(s) 370, 485, 587
PpsI GAGTC 3 cut(s) 370, 485, 587
Psp124BI GAGCTC 1 cut(s) 546
Psp1406I AACGTT 1 cut(s) 450
Psp6I CCWGG 3 cut(s) 150, 415, 426
PspGI CCWGG 3 cut(s) 150, 415, 426
PspN4I GGNNCC 2 cut(s) 279, 414
PstI CTGCAG 1 cut(s) 228
PsuI RGATCY 3 cut(s) 252, 277, 573
PsyI GACNNNGTC 1 cut(s) 476
RsaI GTAC 5 cut(s) 165, 245, 356, 383, 442
RsaNI GTAC 5 cut(s) 164, 244, 355, 382, 441
RseI CAYNNNNRTG 2 cut(s) 311, 377
SacI GAGCTC 1 cut(s) 546
SacII CCGCGG 1 cut(s) 556
SalI GTCGAC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 323
SatI GCNGC 9 cut(s) 54, 68, 121, 124, 127, 158, 212, 227, 501
Sau3AI GATC 6 cut(s) 43, 220, 252, 277, 505, 573
SchI GAGTC 3 cut(s) 371, 486, 588
ScrFI CCNGG 4 cut(s) 152, 417, 428, 600
SduI GDGCHC 2 cut(s) 180, 546
SfaNI GCATC 4 cut(s) 107, 303, 421, 508
SfcI CTRYAG 1 cut(s) 224
Sfr303I CCGCGG 1 cut(s) 556
SgrBI CCGCGG 1 cut(s) 556
SmiMI CAYNNNNRTG 2 cut(s) 311, 377
SphI GCATGC 1 cut(s) 394
Sse9I AATT 2 cut(s) 586, 619
SsiI CCGC 9 cut(s) 170, 194, 212, 288, 324, 501, 553, 555, 624
SspMI CTAG 2 cut(s) 18, 24
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 4 cut(s) 150, 415, 426, 598
TaaI ACNGT 5 cut(s) 359, 376, 412, 440, 550
TaiI ACGT 2 cut(s) 453, 564
TaqI TCGA 3 cut(s) 219, 471, 591
TaqII GACCGA 1 cut(s) 549
TasI AATT 2 cut(s) 586, 619
TatI WGTACW 2 cut(s) 243, 381
TauI GCSGC 2 cut(s) 214, 503
TfiI GAWTC 3 cut(s) 348, 420, 593
TscAI CASTG 2 cut(s) 243, 402
TseI GCWGC 7 cut(s) 53, 67, 120, 123, 126, 157, 226
TspDTI ATGAA 1 cut(s) 599
TspGWI ACGGA 2 cut(s) 457, 604
TspRI CASTG 2 cut(s) 243, 402
Tth111I GACNNNGTC 1 cut(s) 476
XapI RAATTY 1 cut(s) 586
XbaI TCTAGA 1 cut(s) 23
XceI RCATGY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 471
XspI CTAG 2 cut(s) 18, 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.