Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005124.1

Orthogroup ID

OG0004760

Physical Location & Seq

Genomic Coordinates Reverse (-)

100347 .. 102020

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005124.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggcatcatcatcatcaagagccaccgccaactcccacagacccgccgccgcccacgccaacgggcccaccgcaaacggcgaccaccacaggcccaccgcaaacggcgaccaccagaggccgtcaaaccacagccacagcagcggcagcggcaacgggcaccagcactactaccccccaacgacgccgtatcggtcgtcgtcctcgtcggcttcgttcagaggctgctgctgctgcctgttcctgctcttctccctcctggcgctcctggtcctggccgtcgtgctcgtcataatcctggccgtgaaacccaagaagccgcagttcgatctccaacaagtaggagtccagtacatgggcatcaactcgcccaatcccaccaccgacccgaacccggcctcctccgcctctctctccctcagcattcgcctgctcttctccgccgagaaccccaacaaggtcggaatcaagtacggcgagtccaggttcactgtcatgtaccgcggcatccctctgggcaaggcctccgtccccggcttcttccagcaggcccacagcgtcaggcaggtcgtcgccaccatcgccgtcgatcgcgccaatctcattcaggccgacgccgccgacttaatccgcgacgcctccctcaacgaccgggtcgagctccgggtcttgggtgacgtcggcgccaagatccgcgtcttgaacatcgattcccctggcgttcagtttcactatctgggtatagaattgaggaggtcgccgccggaaaagggcaccttgctactgggaagcccaccactactccgcgtcttgaacatcgattcccctggcgttcaggtggaaactgaaaaagcatctttgaaaaggtggggagaaatggtattaaagctttggccttttcttttctttgatgatgatgatgatgacgacgatgatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

313

Amino Acids

33.94

Weight (kDa)

7.18

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01080
fragaria_vesca	FvH4_5g29780
malus_domestica	MD08G1227400.v1.1 MD15G1282800.v1.1 MD15G1419800.v1.1
prunus_persica	Prupe.1G564500_v2.0.a1 Prupe.1G564500_v2.0.a1
pyrus_communis	pycom08g19840 pycom15g37260
rosa_chinensis	RchiOBHm_Chr7g0223311
rosa_laevigata	RLG00000001988 RLG00000005097
rosa_multiflora	Rmu_sc0002048.1_g000033 Rmu_sc0005124.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235920
rosa_rugosa	Rorug03G0301200 Rorug07G0216000
rosa_samantha	Rh1CG073700 Rh2AG559200 Rh2CG344100 Rh4DG006000 Rh5BG144700 Rh5DG181500 Rh6BG510000 Rh7AG359700 Rh7BG349600 Rh7CG378100 Rh7DG355000
rosa_wichuraiana	Rw1G025100 Rw7G030570 Rw7G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	556
AccB1I	GGYRCC	3 cut(s)	159, 683, 773
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccII	CGCG	5 cut(s)	504, 594, 633, 696, 807
AclWI	GGATC	1 cut(s)	685
AcoI	YGGCCR	2 cut(s)	276, 300
AcyI	GRCGYC	5 cut(s)	185, 615, 636, 678, 684
AfaI	GTAC	3 cut(s)	353, 473, 500
AfiI	CCNNNNNNNGG	6 cut(s)	274, 355, 394, 457, 670, 770
AgsI	TTSAA	3 cut(s)	703, 814, 862
AjnI	CCWGG	7 cut(s)	258, 267, 273, 297, 482, 715, 826
AloI	GAACNNNNNNTCC	6 cut(s)	383, 415, 695, 727, 806, 838
AluBI	AGCT	2 cut(s)	661, 889
AluI	AGCT	2 cut(s)	661, 889
Alw21I	GWGCWC	2 cut(s)	288, 663
AlwI	GGATC	1 cut(s)	685
AlwNI	CAGNNNCTG	1 cut(s)	225
ApaI	GGGCCC	1 cut(s)	69
ApeKI	GCWGC	6 cut(s)	141, 147, 225, 228, 231, 234
AspLEI	GCGC	3 cut(s)	265, 596, 686
AspS9I	GGNCC	5 cut(s)	65, 66, 93, 271, 550
AsuC2I	CCSGG	4 cut(s)	395, 534, 653, 665
AsuHPI	GGTGA	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	271
BaeGI	GKGCMC	3 cut(s)	69, 162, 776
BanI	GGYRCC	3 cut(s)	159, 683, 773
BanII	GRGCYC	2 cut(s)	69, 663
Bbv12I	GWGCWC	2 cut(s)	288, 663
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	6 cut(s)	153, 159, 212, 215, 218, 221
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	8 cut(s)	94, 106, 121, 172, 263, 287, 490, 569
BciT130I	CCWGG	7 cut(s)	260, 269, 275, 299, 484, 717, 828
BcnI	CCSGG	4 cut(s)	395, 534, 653, 665
BfoI	RGCGCY	2 cut(s)	266, 687
BfuAI	ACCTGC	1 cut(s)	556
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	5 cut(s)	65, 66, 93, 271, 550
BmiI	GGNNCC	4 cut(s)	67, 161, 685, 775
BmrI	ACTGGG	1 cut(s)	794
BmsI	GCATC	4 cut(s)	14, 369, 516, 863
BmuI	ACTGGG	1 cut(s)	794
Bpu10I	CCTNAGC	1 cut(s)	419
BpuMI	CCSGG	4 cut(s)	395, 534, 653, 665
Bsa29I	ATCGAT	2 cut(s)	708, 819
BsaHI	GRCGYC	5 cut(s)	185, 615, 636, 678, 684
BsaJI	CCNNGG	4 cut(s)	502, 532, 715, 826
BsaXI	ACNNNNNCTCC	6 cut(s)	383, 413, 786, 816, 864, 894
Bsc4I	CCNNNNNNNGG	6 cut(s)	274, 355, 394, 457, 670, 770
Bse1I	ACTGG	2 cut(s)	349, 789
BseBI	CCWGG	7 cut(s)	260, 269, 275, 299, 484, 717, 828
BseCI	ATCGAT	2 cut(s)	708, 819
BseDI	CCNNGG	4 cut(s)	502, 532, 715, 826
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	6 cut(s)	274, 355, 394, 457, 670, 770
BseMII	CTCAG	1 cut(s)	433
BseNI	ACTGG	2 cut(s)	349, 789
BseRI	GAGGAG	2 cut(s)	391, 766
BseSI	GKGCMC	3 cut(s)	69, 162, 776
BseXI	GCAGC	6 cut(s)	153, 159, 212, 215, 218, 221
Bsh1236I	CGCG	5 cut(s)	504, 594, 633, 696, 807
Bsh1285I	CGRYCG	3 cut(s)	197, 592, 652
BshNI	GGYRCC	3 cut(s)	159, 683, 773
BshVI	ATCGAT	2 cut(s)	708, 819
BsiEI	CGRYCG	3 cut(s)	197, 592, 652
BsiHKAI	GWGCWC	2 cut(s)	288, 663
BsiSI	CCGG	5 cut(s)	395, 534, 652, 664, 764
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	6 cut(s)	274, 355, 394, 457, 670, 770
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	423
Bsp120I	GGGCCC	1 cut(s)	65
Bsp1286I	GDGCHC	5 cut(s)	69, 162, 288, 663, 776
Bsp143I	GATC	3 cut(s)	328, 589, 690
BspCNI	CTCAG	1 cut(s)	432
BspDI	ATCGAT	2 cut(s)	708, 819
BspFNI	CGCG	5 cut(s)	504, 594, 633, 696, 807
BspLI	GGNNCC	4 cut(s)	67, 161, 685, 775
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	685
BspQI	GCTCTTC	2 cut(s)	254, 440
BspT107I	GGYRCC	3 cut(s)	159, 683, 773
BsrI	ACTGG	2 cut(s)	349, 789
BssECI	CCNNGG	4 cut(s)	502, 532, 715, 826
BssMI	GATC	3 cut(s)	328, 589, 690
BssNI	GRCGYC	5 cut(s)	185, 615, 636, 678, 684
Bst2UI	CCWGG	7 cut(s)	260, 269, 275, 299, 484, 717, 828
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	2 cut(s)	254, 440
BstACI	GRCGYC	5 cut(s)	185, 615, 636, 678, 684
BstC8I	GCNNGC	2 cut(s)	431, 549
BstDEI	CTNAG	1 cut(s)	419
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	5 cut(s)	504, 594, 633, 696, 807
BstH2I	RGCGCY	2 cut(s)	266, 687
BstHHI	GCGC	3 cut(s)	265, 596, 686
BstKTI	GATC	3 cut(s)	331, 592, 693
BstMBI	GATC	3 cut(s)	328, 589, 690
BstMCI	CGRYCG	3 cut(s)	197, 592, 652
BstMWI	GCNNNNNNNGC	9 cut(s)	56, 141, 147, 150, 231, 234, 404, 581, 617
BstNI	CCWGG	7 cut(s)	260, 269, 275, 299, 484, 717, 828
BstSLI	GKGCMC	3 cut(s)	69, 162, 776
BstUI	CGCG	5 cut(s)	504, 594, 633, 696, 807
BstV1I	GCAGC	6 cut(s)	153, 159, 212, 215, 218, 221
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
Bsu15I	ATCGAT	2 cut(s)	708, 819
BsuTUI	ATCGAT	2 cut(s)	708, 819
BtgI	CCRYGG	1 cut(s)	502
BtgZI	GCGATG	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	489
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	431, 549
CaiI	CAGNNNCTG	1 cut(s)	225
CfoI	GCGC	3 cut(s)	265, 596, 686
Cfr13I	GGNCC	5 cut(s)	65, 66, 93, 271, 550
Cfr42I	CCGCGG	1 cut(s)	505
ClaI	ATCGAT	2 cut(s)	708, 819
CseI	GACGC	6 cut(s)	193, 547, 623, 644, 685, 796
Csp6I	GTAC	3 cut(s)	352, 472, 499
CviAII	CATG	2 cut(s)	355, 496
CviQI	GTAC	3 cut(s)	352, 472, 499
DdeI	CTNAG	1 cut(s)	419
DinI	GGCGCC	1 cut(s)	685
DpnI	GATC	3 cut(s)	330, 591, 692
DpnII	GATC	3 cut(s)	328, 589, 690
EaeI	YGGCCR	2 cut(s)	276, 300
Eam1104I	CTCTTC	2 cut(s)	254, 440
EarI	CTCTTC	2 cut(s)	254, 440
EciI	GGCGGA	2 cut(s)	394, 430
Ecl136II	GAGCTC	1 cut(s)	661
Eco147I	AGGCCT	1 cut(s)	524
Eco24I	GRGCYC	2 cut(s)	69, 663
Eco47I	GGWCC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	661
EcoICRI	GAGCTC	1 cut(s)	661
EcoRII	CCWGG	7 cut(s)	258, 267, 273, 297, 482, 715, 826
EcoT38I	GRGCYC	2 cut(s)	69, 663
EgeI	GGCGCC	1 cut(s)	685
EheI	GGCGCC	1 cut(s)	685
FaeI	CATG	2 cut(s)	358, 499
FaiI	YATR	4 cut(s)	293, 356, 497, 743
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	2 cut(s)	354, 495
FauI	CCCGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	2 cut(s)	69, 663
GlaI	GCGC	3 cut(s)	264, 595, 685
HaeII	RGCGCY	2 cut(s)	266, 687
HapII	CCGG	5 cut(s)	395, 534, 652, 664, 764
HgaI	GACGC	6 cut(s)	193, 547, 623, 644, 685, 796
HhaI	GCGC	3 cut(s)	265, 596, 686
Hin1I	GRCGYC	5 cut(s)	185, 615, 636, 678, 684
Hin1II	CATG	2 cut(s)	358, 499
Hin6I	GCGC	3 cut(s)	263, 594, 684
HinP1I	GCGC	3 cut(s)	263, 594, 684
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	5 cut(s)	345, 465, 479, 710, 821
HpaII	CCGG	5 cut(s)	395, 534, 652, 664, 764
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	2 cut(s)	221, 464
Hpy188III	TCNNGA	3 cut(s)	18, 700, 811
Hpy8I	GTNNAC	1 cut(s)	489
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	678
HpyF10VI	GCNNNNNNNGC	9 cut(s)	56, 141, 147, 150, 231, 234, 404, 581, 617
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	678
Hsp92I	GRCGYC	5 cut(s)	185, 615, 636, 678, 684
Hsp92II	CATG	2 cut(s)	358, 499
HspAI	GCGC	3 cut(s)	263, 594, 684
KasI	GGCGCC	1 cut(s)	683
KspI	CCGCGG	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	328, 589, 690
LguI	GCTCTTC	2 cut(s)	254, 440
LmnI	GCTCC	2 cut(s)	270, 666
Lsp1109I	GCAGC	6 cut(s)	153, 159, 212, 215, 218, 221
LweI	GCATC	4 cut(s)	14, 369, 516, 863
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	3 cut(s)	330, 591, 692
MboI	GATC	3 cut(s)	328, 589, 690
MboII	GAAGA	3 cut(s)	241, 427, 532
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	5 cut(s)	69, 162, 288, 663, 776
MluCI	AATT	1 cut(s)	746
Mly113I	GGCGCC	1 cut(s)	684
MlyI	GAGTC	2 cut(s)	354, 488
MmeI	TCCRAC	2 cut(s)	358, 442
MseI	TTAA	2 cut(s)	626, 884
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	3 cut(s)	144, 150, 504
MspI	CCGG	5 cut(s)	395, 534, 652, 664, 764
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	7 cut(s)	260, 269, 275, 299, 484, 717, 828
MvnI	CGCG	5 cut(s)	504, 594, 633, 696, 807
MwoI	GCNNNNNNNGC	9 cut(s)	56, 141, 147, 150, 231, 234, 404, 581, 617
NarI	GGCGCC	1 cut(s)	684
NciI	CCSGG	4 cut(s)	395, 534, 653, 665
NdeII	GATC	3 cut(s)	328, 589, 690
NlaIII	CATG	2 cut(s)	358, 499
NlaIV	GGNNCC	4 cut(s)	67, 161, 685, 775
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	524
PciSI	GCTCTTC	2 cut(s)	254, 440
PcsI	WCGNNNNNNNCGW	3 cut(s)	203, 212, 654
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	465, 710, 821
PflFI	GACNNNGTC	1 cut(s)	653
PflMI	CCANNNNNTGG	1 cut(s)	355
Ple19I	CGATCG	1 cut(s)	592
PleI	GAGTC	2 cut(s)	353, 487
PluTI	GGCGCC	1 cut(s)	687
PpsI	GAGTC	2 cut(s)	353, 487
Psp124BI	GAGCTC	1 cut(s)	663
Psp6I	CCWGG	7 cut(s)	258, 267, 273, 297, 482, 715, 826
PspGI	CCWGG	7 cut(s)	258, 267, 273, 297, 482, 715, 826
PspN4I	GGNNCC	4 cut(s)	67, 161, 685, 775
PspOMI	GGGCCC	1 cut(s)	65
PspPI	GGNCC	5 cut(s)	65, 66, 93, 271, 550
PstNI	CAGNNNCTG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	690
PsyI	GACNNNGTC	1 cut(s)	653
PvuI	CGATCG	1 cut(s)	592
RsaI	GTAC	3 cut(s)	353, 473, 500
RsaNI	GTAC	3 cut(s)	352, 472, 499
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	663
SacII	CCGCGG	1 cut(s)	505
SapI	GCTCTTC	2 cut(s)	254, 440
SaqAI	TTAA	2 cut(s)	626, 884
Sau3AI	GATC	3 cut(s)	328, 589, 690
Sau96I	GGNCC	5 cut(s)	65, 66, 93, 271, 550
SchI	GAGTC	2 cut(s)	354, 488
SduI	GDGCHC	5 cut(s)	69, 162, 288, 663, 776
SfaNI	GCATC	4 cut(s)	14, 369, 516, 863
SfoI	GGCGCC	1 cut(s)	685
Sfr303I	CCGCGG	1 cut(s)	505
SgrBI	CCGCGG	1 cut(s)	505
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	1 cut(s)	746
SseBI	AGGCCT	1 cut(s)	524
SspDI	GGCGCC	1 cut(s)	683
SstI	GAGCTC	1 cut(s)	663
StuI	AGGCCT	1 cut(s)	524
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	5 cut(s)	327, 588, 657, 708, 819
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	746
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	8 cut(s)	50, 53, 147, 153, 322, 507, 620, 763
TfiI	GAWTC	3 cut(s)	465, 710, 821
Tru1I	TTAA	2 cut(s)	626, 884
Tru9I	TTAA	2 cut(s)	626, 884
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	6 cut(s)	141, 147, 225, 228, 231, 234
Tsp45I	GTSAC	1 cut(s)	674
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	1 cut(s)	496
Tth111I	GACNNNGTC	1 cut(s)	653
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	271
ZraI	GACGTC	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.