Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002048.1

Orthogroup ID

OG0004760

Physical Location & Seq

Genomic Coordinates Reverse (-)

109011 .. 109349

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002048.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgtaccacggcatccctttgggtgaggcctccgaccccggcttcttccaacaagcccacaacatcaggcaggtcatcgccaccatcaccgttgatcgcgccaatctcattcaggccgacgccgccgatttaatccccgacacctccctcaacaaccgggtcgagctccaggtcttgggtgacgtcggcgccaagatccgcatcttgaacatcgattctccagggtggaaggcgacggggccgattcgatcaagacattcgatcaaggttgatcaaggttgcgatgcactgccatcagttacaggagagacggagttaacgatgtcacaaaccatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

112

Amino Acids

12.08

Weight (kDa)

5.14

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01080
fragaria_vesca	FvH4_5g29780
malus_domestica	MD08G1227400.v1.1 MD15G1282800.v1.1 MD15G1419800.v1.1
prunus_persica	Prupe.1G564500_v2.0.a1 Prupe.1G564500_v2.0.a1
pyrus_communis	pycom08g19840 pycom15g37260
rosa_chinensis	RchiOBHm_Chr7g0223311
rosa_laevigata	RLG00000001988 RLG00000005097
rosa_multiflora	Rmu_sc0002048.1_g000033 Rmu_sc0005124.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235920
rosa_rugosa	Rorug03G0301200 Rorug07G0216000
rosa_samantha	Rh1CG073700 Rh2AG559200 Rh2CG344100 Rh4DG006000 Rh5BG144700 Rh5DG181500 Rh6BG510000 Rh7AG359700 Rh7BG349600 Rh7CG378100 Rh7DG355000
rosa_wichuraiana	Rw1G025100 Rw7G030570 Rw7G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	123, 199
AclWI	GGATC	1 cut(s)	190
AcyI	GRCGYC	3 cut(s)	120, 183, 189
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	168, 220
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	3 cut(s)	27, 114, 239
AspLEI	GCGC	2 cut(s)	101, 191
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	2 cut(s)	39, 158
AsuHPI	GGTGA	3 cut(s)	35, 79, 191
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	2 cut(s)	92, 301
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	170, 222
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	2 cut(s)	39, 158
BcoDI	GTCTC	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	4 cut(s)	39, 158, 170, 222
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	190, 240
BmrFI	CCNGG	4 cut(s)	39, 158, 170, 222
BmsI	GCATC	3 cut(s)	21, 210, 274
BpmI	CTGGAG	2 cut(s)	152, 204
BpuMI	CCSGG	2 cut(s)	39, 158
Bsa29I	ATCGAT	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	200
BsaHI	GRCGYC	3 cut(s)	120, 183, 189
BsaJI	CCNNGG	3 cut(s)	7, 37, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	170, 222
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	3 cut(s)	7, 37, 221
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	29, 116, 241
BshNI	GGYRCC	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	39, 157
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	302
BsmBI	CGTCTC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	29, 116, 241
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	94, 195, 248, 261, 271
BspACI	CCGC	2 cut(s)	123, 199
BspANI	GGCC	3 cut(s)	29, 116, 241
BspDI	ATCGAT	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	190, 240
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	7, 37, 221
BssMI	GATC	5 cut(s)	94, 195, 248, 261, 271
BssNI	GRCGYC	3 cut(s)	120, 183, 189
Bst2UI	CCWGG	2 cut(s)	170, 222
Bst4CI	ACNGT	1 cut(s)	91
BstACI	GRCGYC	3 cut(s)	120, 183, 189
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	101, 191
BstKTI	GATC	5 cut(s)	97, 198, 251, 264, 274
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	5 cut(s)	94, 195, 248, 261, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	2 cut(s)	170, 222
BstSCI	CCNGG	4 cut(s)	37, 156, 168, 220
BstUI	CGCG	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	29, 116, 241
BsuTUI	ATCGAT	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	2 cut(s)	61, 297
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
BveI	ACCTGC	1 cut(s)	61
CfoI	GCGC	2 cut(s)	101, 191
Cfr13I	GGNCC	1 cut(s)	239
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	6 cut(s)	29, 42, 56, 116, 166, 241
CviKI_1	RGCY	6 cut(s)	29, 42, 56, 116, 166, 241
CviQI	GTAC	1 cut(s)	4
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	5 cut(s)	96, 197, 250, 263, 273
DpnII	GATC	5 cut(s)	94, 195, 248, 261, 271
Ecl136II	GAGCTC	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	168, 220
EcoT38I	GRGCYC	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	123
GlaI	GCGC	2 cut(s)	100, 190
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	2 cut(s)	152, 204
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	29, 116, 241
HapII	CCGG	2 cut(s)	39, 157
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	101, 191
Hin1I	GRCGYC	3 cut(s)	120, 183, 189
Hin6I	GCGC	2 cut(s)	99, 189
HinP1I	GCGC	2 cut(s)	99, 189
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	2 cut(s)	215, 244
HpaI	GTTAAC	1 cut(s)	318
HpaII	CCGG	2 cut(s)	39, 157
HphI	GGTGA	3 cut(s)	35, 79, 191
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	205, 252
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	3 cut(s)	122, 188, 238
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	3 cut(s)	120, 183, 189
HspAI	GCGC	2 cut(s)	99, 189
KasI	GGCGCC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	271
KspAI	GTTAAC	1 cut(s)	318
Kzo9I	GATC	5 cut(s)	94, 195, 248, 261, 271
LmnI	GCTCC	1 cut(s)	171
LweI	GCATC	3 cut(s)	21, 210, 274
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	179, 298, 324
MalI	GATC	5 cut(s)	96, 197, 250, 263, 273
MboI	GATC	5 cut(s)	94, 195, 248, 261, 271
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	168
Mly113I	GGCGCC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	57, 73
MnlI	CCTC	4 cut(s)	19, 40, 154, 158
MseI	TTAA	3 cut(s)	131, 317, 337
MspI	CCGG	2 cut(s)	39, 157
MspR9I	CCNGG	4 cut(s)	39, 158, 170, 222
MvaI	CCWGG	2 cut(s)	170, 222
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	122
NarI	GGCGCC	1 cut(s)	189
NciI	CCSGG	2 cut(s)	39, 158
NdeII	GATC	5 cut(s)	94, 195, 248, 261, 271
NlaIV	GGNNCC	2 cut(s)	190, 240
NmuCI	GTSAC	2 cut(s)	179, 324
PceI	AGGCCT	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	215, 244
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	168, 220
PspGI	CCWGG	2 cut(s)	168, 220
PspN4I	GGNNCC	2 cut(s)	190, 240
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	131, 317, 337
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	5 cut(s)	94, 195, 248, 261, 271
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	4 cut(s)	39, 158, 170, 222
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	7 cut(s)	75, 146, 168, 174, 186, 270, 280
SfaNI	GCATC	3 cut(s)	21, 210, 274
SfoI	GGCGCC	1 cut(s)	190
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	2 cut(s)	123, 199
SspDI	GGCGCC	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	37, 156, 168, 220
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	4 cut(s)	162, 213, 247, 260
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	215, 244
Tru1I	TTAA	3 cut(s)	131, 317, 337
Tru9I	TTAA	3 cut(s)	131, 317, 337
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	2 cut(s)	179, 324
Tsp45I	GTSAC	2 cut(s)	179, 324
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	175
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.