Rh7DG355000

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004760
Physical Location & Seq
Reverse (-)
47317724 .. 47321026
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG355000.1

Sequence Viewer

Length: 783 bp
ATGGCATCATCATCAAGAGCCACCGCCAACTCCCACAGACCCGCCACCGCCCACGCCAACGGGCCCACCGCAAACGGCGACCACCACAGGCCGTCAAACCACAGCCACAGCAGCGGCAGCGGCAACGGGCACCAGCACTACTACCCCCCAACGACGCCGTATCGGTCGTCGTCCTCGTCGGCTTCGTTCAGAGGCTGCTGCTGCTGCCTCTTCCTGCTCTTCTCCCTCCTGGCGCTCCTGGTCCTGGCCGTCGTGCTCGTCATAATCCTGGCCGTGAAGCCCAAGAAGCCGCAGTTCGATCTCCAGCAAGTAGGAGTCCAGTACATGGGCATCAACTCGCCCAATCCCACCACCGACCCGAACCCGGCCTCCTCCGCCTCTCTCTCCCTCAGCATTCGCCTGCTCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGCATCCCTCTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGCAGGTCGTCGCCACCATCGCCGTCGATCGCGCCAATCTCATTCAGGCCGACGCCGCCGACTTAATCCGCGACGCCTCCCTCAACGACCGGGTCGAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGATTCCCCTGGCGTTCAGGTTTCCGTGGATTGTGCAATCGTTATAAGTCCAAGGAAGCAGTCTCTTACTTACAAGCAGTGTGGATTTGATGGATTGAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

260

Amino Acids

27.74

Weight (kDa)

9.45

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 136 - 234 1.7e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 722
AatII GACGTC 1 cut(s) 651
Acc36I ACCTGC 1 cut(s) 526
AccB1I GGYRCC 2 cut(s) 129, 653
AccB7I CCANNNNNTGG 1 cut(s) 325
AccII CGCG 4 cut(s) 474, 564, 603, 666
AclWI GGATC 1 cut(s) 655
AcoI YGGCCR 2 cut(s) 246, 270
AcyI GRCGYC 5 cut(s) 155, 585, 606, 648, 654
AfaI GTAC 3 cut(s) 323, 443, 470
AfiI CCNNNNNNNGG 5 cut(s) 244, 325, 364, 427, 640
AgsI TTSAA 1 cut(s) 673
AjnI CCWGG 6 cut(s) 228, 237, 243, 267, 452, 685
AloI GAACNNNNNNTCC 4 cut(s) 353, 385, 665, 697
AluBI AGCT 1 cut(s) 631
AluI AGCT 1 cut(s) 631
Alw21I GWGCWC 2 cut(s) 258, 633
Alw26I GTCTC 1 cut(s) 744
AlwI GGATC 1 cut(s) 655
AlwNI CAGNNNCTG 1 cut(s) 195
AoxI GGCC 8 cut(s) 62, 89, 246, 270, 366, 492, 519, 579
ApaI GGGCCC 1 cut(s) 66
ApeKI GCWGC 6 cut(s) 111, 117, 195, 198, 201, 204
AspLEI GCGC 3 cut(s) 235, 566, 656
AspS9I GGNCC 4 cut(s) 62, 63, 241, 520
AsuC2I CCSGG 4 cut(s) 365, 504, 623, 635
AsuHPI GGTGA 1 cut(s) 656
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 2 cut(s) 66, 132
BanI GGYRCC 2 cut(s) 129, 653
BanII GRGCYC 2 cut(s) 66, 633
Bbv12I GWGCWC 2 cut(s) 258, 633
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 6 cut(s) 123, 129, 182, 185, 188, 191
BccI CCATC 2 cut(s) 557, 761
BceAI ACGGC 7 cut(s) 76, 91, 142, 233, 257, 460, 539
BciT130I CCWGG 6 cut(s) 230, 239, 245, 269, 454, 687
BcnI CCSGG 4 cut(s) 365, 504, 623, 635
BcoDI GTCTC 1 cut(s) 744
BfoI RGCGCY 2 cut(s) 236, 657
BfuAI ACCTGC 1 cut(s) 526
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 4 cut(s) 62, 63, 241, 520
BmiI GGNNCC 3 cut(s) 64, 131, 655
BmsI GCATC 3 cut(s) 14, 339, 486
BpmI CTGGAG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 389
BpuMI CCSGG 4 cut(s) 365, 504, 623, 635
Bsa29I ATCGAT 1 cut(s) 678
BsaHI GRCGYC 5 cut(s) 155, 585, 606, 648, 654
BsaJI CCNNGG 5 cut(s) 472, 502, 685, 702, 728
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 5 cut(s) 244, 325, 364, 427, 640
Bse1I ACTGG 1 cut(s) 319
BseBI CCWGG 6 cut(s) 230, 239, 245, 269, 454, 687
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 5 cut(s) 472, 502, 685, 702, 728
BseGI GGATG 1 cut(s) 477
BseLI CCNNNNNNNGG 5 cut(s) 244, 325, 364, 427, 640
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 361
BseSI GKGCMC 2 cut(s) 66, 132
BseXI GCAGC 6 cut(s) 123, 129, 182, 185, 188, 191
Bsh1236I CGCG 4 cut(s) 474, 564, 603, 666
Bsh1285I CGRYCG 3 cut(s) 167, 562, 622
BshFI GGCC 8 cut(s) 64, 91, 248, 272, 368, 494, 521, 581
BshNI GGYRCC 2 cut(s) 129, 653
BshVI ATCGAT 1 cut(s) 678
BsiEI CGRYCG 3 cut(s) 167, 562, 622
BsiHKAI GWGCWC 2 cut(s) 258, 633
BsiSI CCGG 4 cut(s) 365, 504, 622, 634
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 5 cut(s) 244, 325, 364, 427, 640
BsmAI GTCTC 1 cut(s) 744
BsmFI GGGAC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 8 cut(s) 64, 91, 248, 272, 368, 494, 521, 581
Bsp120I GGGCCC 1 cut(s) 62
Bsp1286I GDGCHC 4 cut(s) 66, 132, 258, 633
Bsp143I GATC 3 cut(s) 298, 559, 660
BspANI GGCC 8 cut(s) 64, 91, 248, 272, 368, 494, 521, 581
BspCNI CTCAG 1 cut(s) 402
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 4 cut(s) 474, 564, 603, 666
BspLI GGNNCC 3 cut(s) 64, 131, 655
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 1 cut(s) 655
BspQI GCTCTTC 2 cut(s) 224, 410
BspT107I GGYRCC 2 cut(s) 129, 653
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 5 cut(s) 472, 502, 685, 702, 728
BssMI GATC 3 cut(s) 298, 559, 660
BssNI GRCGYC 5 cut(s) 155, 585, 606, 648, 654
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 6 cut(s) 230, 239, 245, 269, 454, 687
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 3 cut(s) 215, 224, 410
BstACI GRCGYC 5 cut(s) 155, 585, 606, 648, 654
BstC8I GCNNGC 2 cut(s) 401, 519
BstDEI CTNAG 1 cut(s) 389
BstDSI CCRYGG 2 cut(s) 472, 702
BstF5I GGATG 1 cut(s) 477
BstFNI CGCG 4 cut(s) 474, 564, 603, 666
BstH2I RGCGCY 2 cut(s) 236, 657
BstHHI GCGC 3 cut(s) 235, 566, 656
BstKTI GATC 3 cut(s) 301, 562, 663
BstMAI GTCTC 1 cut(s) 744
BstMBI GATC 3 cut(s) 298, 559, 660
BstMCI CGRYCG 3 cut(s) 167, 562, 622
BstMWI GCNNNNNNNGC 9 cut(s) 111, 117, 120, 201, 204, 286, 374, 551, 587
BstNI CCWGG 6 cut(s) 230, 239, 245, 269, 454, 687
BstSLI GKGCMC 2 cut(s) 66, 132
BstUI CGCG 4 cut(s) 474, 564, 603, 666
BstV1I GCAGC 6 cut(s) 123, 129, 182, 185, 188, 191
BstX2I RGATCY 1 cut(s) 660
BstYI RGATCY 1 cut(s) 660
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 8 cut(s) 64, 91, 248, 272, 368, 494, 521, 581
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 2 cut(s) 472, 702
BtgZI GCGATG 1 cut(s) 535
BtsCI GGATG 1 cut(s) 477
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 2 cut(s) 459, 761
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 401, 519
CaiI CAGNNNCTG 1 cut(s) 195
CfoI GCGC 3 cut(s) 235, 566, 656
Cfr13I GGNCC 4 cut(s) 62, 63, 241, 520
Cfr42I CCGCGG 1 cut(s) 475
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 5 cut(s) 163, 517, 593, 614, 655
Csp6I GTAC 3 cut(s) 322, 442, 469
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 2 cut(s) 325, 466
CviQI GTAC 3 cut(s) 322, 442, 469
DdeI CTNAG 1 cut(s) 389
DinI GGCGCC 1 cut(s) 655
DpnI GATC 3 cut(s) 300, 561, 662
DpnII GATC 3 cut(s) 298, 559, 660
EaeI YGGCCR 2 cut(s) 246, 270
Eam1104I CTCTTC 3 cut(s) 215, 224, 410
EarI CTCTTC 3 cut(s) 215, 224, 410
EciI GGCGGA 2 cut(s) 364, 400
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 1 cut(s) 728
Eco147I AGGCCT 1 cut(s) 494
Eco24I GRGCYC 2 cut(s) 66, 633
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 631
EcoRII CCWGG 6 cut(s) 228, 237, 243, 267, 452, 685
EcoT14I CCWWGG 1 cut(s) 728
EcoT38I GRGCYC 2 cut(s) 66, 633
EgeI GGCGCC 1 cut(s) 655
EheI GGCGCC 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 2 cut(s) 328, 469
FaiI YATR 4 cut(s) 263, 326, 467, 722
FaqI GGGAC 1 cut(s) 485
FatI CATG 2 cut(s) 324, 465
FauI CCCGC 1 cut(s) 49
FokI GGATG 1 cut(s) 464
FriOI GRGCYC 2 cut(s) 66, 633
GlaI GCGC 3 cut(s) 234, 565, 655
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 2 cut(s) 236, 657
HaeIII GGCC 8 cut(s) 64, 91, 248, 272, 368, 494, 521, 581
HapII CCGG 4 cut(s) 365, 504, 622, 634
HgaI GACGC 5 cut(s) 163, 517, 593, 614, 655
HhaI GCGC 3 cut(s) 235, 566, 656
Hin1I GRCGYC 5 cut(s) 155, 585, 606, 648, 654
Hin1II CATG 2 cut(s) 328, 469
Hin6I GCGC 3 cut(s) 233, 564, 654
HinP1I GCGC 3 cut(s) 233, 564, 654
HinfI GANTC 4 cut(s) 315, 435, 449, 680
HpaII CCGG 4 cut(s) 365, 504, 622, 634
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 2 cut(s) 191, 434
Hpy188III TCNNGA 2 cut(s) 15, 670
Hpy8I GTNNAC 1 cut(s) 459
Hpy99I CGWCG 9 cut(s) 157, 172, 181, 254, 545, 560, 587, 608, 653
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 1 cut(s) 713
HpyF10VI GCNNNNNNNGC 9 cut(s) 111, 117, 120, 201, 204, 286, 374, 551, 587
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 648
Hsp92I GRCGYC 5 cut(s) 155, 585, 606, 648, 654
Hsp92II CATG 2 cut(s) 328, 469
HspAI GCGC 3 cut(s) 233, 564, 654
KasI GGCGCC 1 cut(s) 653
KspI CCGCGG 1 cut(s) 475
Kzo9I GATC 3 cut(s) 298, 559, 660
LguI GCTCTTC 2 cut(s) 224, 410
LmnI GCTCC 2 cut(s) 240, 636
Lsp1109I GCAGC 6 cut(s) 123, 129, 182, 185, 188, 191
LweI GCATC 3 cut(s) 14, 339, 486
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 1 cut(s) 644
MalI GATC 3 cut(s) 300, 561, 662
MboI GATC 3 cut(s) 298, 559, 660
MboII GAAGA 4 cut(s) 202, 211, 397, 502
MflI RGATCY 1 cut(s) 660
MhlI GDGCHC 4 cut(s) 66, 132, 258, 633
Mly113I GGCGCC 1 cut(s) 654
MlyI GAGTC 2 cut(s) 324, 458
MmeI TCCRAC 1 cut(s) 412
MseI TTAA 1 cut(s) 596
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 3 cut(s) 114, 120, 474
MspI CCGG 4 cut(s) 365, 504, 622, 634
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 6 cut(s) 230, 239, 245, 269, 454, 687
MvnI CGCG 4 cut(s) 474, 564, 603, 666
MwoI GCNNNNNNNGC 9 cut(s) 111, 117, 120, 201, 204, 286, 374, 551, 587
NarI GGCGCC 1 cut(s) 654
NciI CCSGG 4 cut(s) 365, 504, 623, 635
NdeII GATC 3 cut(s) 298, 559, 660
NlaIII CATG 2 cut(s) 328, 469
NlaIV GGNNCC 3 cut(s) 64, 131, 655
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 644
PceI AGGCCT 1 cut(s) 494
PciSI GCTCTTC 2 cut(s) 224, 410
PcsI WCGNNNNNNNCGW 3 cut(s) 173, 182, 624
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 435, 680
PflFI GACNNNGTC 1 cut(s) 623
PflMI CCANNNNNTGG 1 cut(s) 325
Ple19I CGATCG 1 cut(s) 562
PleI GAGTC 2 cut(s) 323, 457
PluTI GGCGCC 1 cut(s) 657
PpsI GAGTC 2 cut(s) 323, 457
PsiI TTATAA 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 633
Psp6I CCWGG 6 cut(s) 228, 237, 243, 267, 452, 685
PspGI CCWGG 6 cut(s) 228, 237, 243, 267, 452, 685
PspN4I GGNNCC 3 cut(s) 64, 131, 655
PspOMI GGGCCC 1 cut(s) 62
PspPI GGNCC 4 cut(s) 62, 63, 241, 520
PstNI CAGNNNCTG 1 cut(s) 195
PsuI RGATCY 1 cut(s) 660
PsyI GACNNNGTC 1 cut(s) 623
PvuI CGATCG 1 cut(s) 562
RsaI GTAC 3 cut(s) 323, 443, 470
RsaNI GTAC 3 cut(s) 322, 442, 469
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 633
SacII CCGCGG 1 cut(s) 475
SapI GCTCTTC 2 cut(s) 224, 410
SaqAI TTAA 1 cut(s) 596
Sau3AI GATC 3 cut(s) 298, 559, 660
Sau96I GGNCC 4 cut(s) 62, 63, 241, 520
SchI GAGTC 2 cut(s) 324, 458
SduI GDGCHC 4 cut(s) 66, 132, 258, 633
SetI ASST 6 cut(s) 432, 458, 540, 633, 651, 699
SfaNI GCATC 3 cut(s) 14, 339, 486
SfoI GGCGCC 1 cut(s) 655
Sfr303I CCGCGG 1 cut(s) 475
SgrBI CCGCGG 1 cut(s) 475
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 464
SseBI AGGCCT 1 cut(s) 494
SspDI GGCGCC 1 cut(s) 653
SstI GAGCTC 1 cut(s) 633
StuI AGGCCT 1 cut(s) 494
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 1 cut(s) 463
TaiI ACGT 1 cut(s) 651
TaqI TCGA 4 cut(s) 297, 558, 627, 678
TaqII GACCGA 1 cut(s) 153
TatI WGTACW 1 cut(s) 321
TauI GCSGC 5 cut(s) 117, 123, 292, 477, 590
TfiI GAWTC 2 cut(s) 435, 680
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 2 cut(s) 466, 761
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 6 cut(s) 111, 117, 195, 198, 201, 204
Tsp45I GTSAC 1 cut(s) 644
TspGWI ACGGA 2 cut(s) 487, 691
TspRI CASTG 2 cut(s) 466, 761
Tth111I GACNNNGTC 1 cut(s) 623
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 241
ZraI GACGTC 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.