Rw1G025100

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004760
Physical Location & Seq
Forward (+)
51724248 .. 51725638
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025100.1

Sequence Viewer

Length: 615 bp
ATGACGCCGTATCGGTCCTTGTCCTCGTCGGCTTCGTTCAAAGGCTGCTGCTGCCTCTTCCTGCTCTTCTCCTTCTTGGCCCTCCTGGTCCTAGCCATCGTCCTCTTGATAATCCTGGCCGTGAAACCCAAGAAGCCGCAGTTCGATCTCCAACAAGTAGGAGTCCAGTACATGGGCATCGACTCACCCAATCGCACCACCGACCCGAACCCGGCCTCCTCTGCCTCTAACCCCAACAAGGTCGAAATCAAGTACGGCGAGTCCAGGTTCACTATCATGTACCGCGGCATCCCTTTGGGTGAGGCCTCCGTCCCCGGCTTCTTCCAGCAAGCCCATAACATCAGGCAGGTCGTCGCCACCATCACCGTTGATCGCGCCAATCTCATTCAGGCCGACGCCACCGATTTAATCCCCGACGCCTCCCTCAACAACCTGGTCGAGCTCCGGGTCTTGGGTGACGTAGGCGCCAAGATCCGCGTCTTGAACATCGATTCTCCAGGGTGGAAGGCGACGGGGCCGATTCGATCAAGACGTTCGATCAAGTTATGTAGCCTTCCACTCAAAAAAAAAAAAAAAAGTGTCAGATTTATAGATATATTATCTTTAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

204

Amino Acids

22.36

Weight (kDa)

9.9

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 75 - 158 1.4e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 172
AccII CGCG 3 cut(s) 285, 375, 477
AciI CCGC 4 cut(s) 137, 283, 285, 475
AclWI GGATC 1 cut(s) 466
AcoI YGGCCR 1 cut(s) 117
AcyI GRCGYC 4 cut(s) 5, 396, 417, 465
AfaI GTAC 3 cut(s) 170, 254, 281
AfiI CCNNNNNNNGG 4 cut(s) 172, 211, 238, 451
AgsI TTSAA 2 cut(s) 40, 484
AjnI CCWGG 5 cut(s) 84, 114, 263, 432, 496
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw21I GWGCWC 1 cut(s) 444
AlwI GGATC 1 cut(s) 466
AoxI GGCC 6 cut(s) 78, 117, 213, 303, 390, 515
ApeKI GCWGC 3 cut(s) 45, 48, 51
AspLEI GCGC 2 cut(s) 377, 467
AspS9I GGNCC 4 cut(s) 15, 79, 88, 515
AsuC2I CCSGG 3 cut(s) 212, 315, 446
AsuHPI GGTGA 4 cut(s) 177, 311, 355, 467
AvaII GGWCC 2 cut(s) 15, 88
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 32, 35, 38
BccI CCATC 2 cut(s) 104, 368
BceAI ACGGC 2 cut(s) 104, 271
BciT130I CCWGG 5 cut(s) 86, 116, 265, 434, 498
BcnI CCSGG 3 cut(s) 212, 315, 446
BfaI CTAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 5 cut(s) 46, 49, 52, 137, 286
BlsI GCNGC 5 cut(s) 47, 50, 53, 138, 287
Bme1390I CCNGG 8 cut(s) 86, 116, 212, 265, 315, 434, 446, 498
Bme18I GGWCC 2 cut(s) 15, 88
BmgT120I GGNCC 4 cut(s) 15, 79, 88, 515
BmiI GGNNCC 2 cut(s) 466, 516
BmrFI CCNGG 8 cut(s) 86, 116, 212, 265, 315, 434, 446, 498
BmsI GCATC 2 cut(s) 186, 297
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 3 cut(s) 212, 315, 446
Bsa29I ATCGAT 1 cut(s) 489
BsaHI GRCGYC 4 cut(s) 5, 396, 417, 465
BsaJI CCNNGG 3 cut(s) 283, 313, 497
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 211, 238, 451
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 5 cut(s) 86, 116, 265, 434, 498
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 283, 313, 497
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 4 cut(s) 172, 211, 238, 451
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 208
BseXI GCAGC 3 cut(s) 32, 35, 38
Bsh1236I CGCG 3 cut(s) 285, 375, 477
BshFI GGCC 6 cut(s) 80, 119, 215, 305, 392, 517
BshNI GGYRCC 1 cut(s) 464
BshVI ATCGAT 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 3 cut(s) 212, 315, 445
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 4 cut(s) 172, 211, 238, 451
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 6 cut(s) 80, 119, 215, 305, 392, 517
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 5 cut(s) 145, 370, 471, 524, 537
BspACI CCGC 4 cut(s) 137, 283, 285, 475
BspANI GGCC 6 cut(s) 80, 119, 215, 305, 392, 517
BspDI ATCGAT 1 cut(s) 489
BspFNI CGCG 3 cut(s) 285, 375, 477
BspLI GGNNCC 2 cut(s) 466, 516
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 1 cut(s) 466
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 464
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 283, 313, 497
BssMI GATC 5 cut(s) 145, 370, 471, 524, 537
BssNI GRCGYC 4 cut(s) 5, 396, 417, 465
Bst2UI CCWGG 5 cut(s) 86, 116, 265, 434, 498
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 62, 71
BstACI GRCGYC 4 cut(s) 5, 396, 417, 465
BstC8I GCNNGC 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 3 cut(s) 285, 375, 477
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 2 cut(s) 377, 467
BstKTI GATC 5 cut(s) 148, 373, 474, 527, 540
BstMBI GATC 5 cut(s) 145, 370, 471, 524, 537
BstMWI GCNNNNNNNGC 2 cut(s) 51, 221
BstNI CCWGG 5 cut(s) 86, 116, 265, 434, 498
BstSCI CCNGG 8 cut(s) 84, 114, 210, 263, 313, 432, 444, 496
BstUI CGCG 3 cut(s) 285, 375, 477
BstV1I GCAGC 3 cut(s) 32, 35, 38
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 6 cut(s) 80, 119, 215, 305, 392, 517
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 288
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 2 cut(s) 377, 467
Cfr13I GGNCC 4 cut(s) 15, 79, 88, 515
Cfr42I CCGCGG 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 489
CseI GACGC 4 cut(s) 13, 404, 425, 466
CsiI ACCWGGT 1 cut(s) 432
Csp6I GTAC 3 cut(s) 169, 253, 280
CviAII CATG 2 cut(s) 172, 277
CviQI GTAC 3 cut(s) 169, 253, 280
DinI GGCGCC 1 cut(s) 466
DpnI GATC 5 cut(s) 147, 372, 473, 526, 539
DpnII GATC 5 cut(s) 145, 370, 471, 524, 537
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 62, 71
EarI CTCTTC 2 cut(s) 62, 71
Ecl136II GAGCTC 1 cut(s) 442
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 2 cut(s) 15, 88
Eco53kI GAGCTC 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 442
EcoRII CCWGG 5 cut(s) 84, 114, 263, 432, 496
EcoT38I GRGCYC 1 cut(s) 444
EgeI GGCGCC 1 cut(s) 466
EheI GGCGCC 1 cut(s) 466
FaeI CATG 2 cut(s) 175, 280
FaiI YATR 6 cut(s) 173, 278, 336, 547, 590, 596
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 171, 276
Fnu4HI GCNGC 5 cut(s) 46, 49, 52, 137, 286
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 5 cut(s) 46, 49, 52, 137, 286
FspBI CTAG 1 cut(s) 92
GlaI GCGC 2 cut(s) 376, 466
GluI GCNGC 5 cut(s) 46, 49, 52, 137, 286
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 6 cut(s) 80, 119, 215, 305, 392, 517
HapII CCGG 3 cut(s) 212, 315, 445
HgaI GACGC 4 cut(s) 13, 404, 425, 466
HhaI GCGC 2 cut(s) 377, 467
Hin1I GRCGYC 4 cut(s) 5, 396, 417, 465
Hin1II CATG 2 cut(s) 175, 280
Hin6I GCGC 2 cut(s) 375, 465
HinP1I GCGC 2 cut(s) 375, 465
HinfI GANTC 5 cut(s) 162, 182, 260, 491, 520
HpaII CCGG 3 cut(s) 212, 315, 445
HphI GGTGA 4 cut(s) 177, 311, 355, 467
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 1 cut(s) 584
Hpy188III TCNNGA 3 cut(s) 106, 481, 528
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 5 cut(s) 31, 356, 398, 419, 514
HpyAV CCTTC 3 cut(s) 82, 499, 563
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 459, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 221
HpySE526I ACGT 2 cut(s) 459, 532
Hsp92I GRCGYC 4 cut(s) 5, 396, 417, 465
Hsp92II CATG 2 cut(s) 175, 280
HspAI GCGC 2 cut(s) 375, 465
KasI GGCGCC 1 cut(s) 464
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 5 cut(s) 145, 370, 471, 524, 537
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 447
Lsp1109I GCAGC 3 cut(s) 32, 35, 38
LweI GCATC 2 cut(s) 186, 297
MabI ACCWGGT 1 cut(s) 432
MaeI CTAG 1 cut(s) 92
MaeII ACGT 2 cut(s) 459, 532
MaeIII GTNAC 1 cut(s) 455
MalI GATC 5 cut(s) 147, 372, 473, 526, 539
MboI GATC 5 cut(s) 145, 370, 471, 524, 537
MboII GAAGA 3 cut(s) 49, 58, 313
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 444
Mly113I GGCGCC 1 cut(s) 465
MlyI GAGTC 3 cut(s) 171, 176, 269
MmeI TCCRAC 1 cut(s) 175
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 3 cut(s) 212, 315, 445
MspR9I CCNGG 8 cut(s) 86, 116, 212, 265, 315, 434, 446, 498
MvaI CCWGG 5 cut(s) 86, 116, 265, 434, 498
MvnI CGCG 3 cut(s) 285, 375, 477
MwoI GCNNNNNNNGC 2 cut(s) 51, 221
NarI GGCGCC 1 cut(s) 465
NciI CCSGG 3 cut(s) 212, 315, 446
NdeII GATC 5 cut(s) 145, 370, 471, 524, 537
NlaIII CATG 2 cut(s) 175, 280
NlaIV GGNNCC 2 cut(s) 466, 516
NmuCI GTSAC 1 cut(s) 455
PceI AGGCCT 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 529
PfeI GAWTC 2 cut(s) 491, 520
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 5 cut(s) 47, 50, 53, 138, 287
PleI GAGTC 3 cut(s) 170, 176, 268
PluTI GGCGCC 1 cut(s) 468
PpsI GAGTC 3 cut(s) 170, 176, 268
Psp124BI GAGCTC 1 cut(s) 444
Psp6I CCWGG 5 cut(s) 84, 114, 263, 432, 496
PspGI CCWGG 5 cut(s) 84, 114, 263, 432, 496
PspN4I GGNNCC 2 cut(s) 466, 516
PspPI GGNCC 4 cut(s) 15, 79, 88, 515
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 3 cut(s) 170, 254, 281
RsaNI GTAC 3 cut(s) 169, 253, 280
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 444
SacII CCGCGG 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 5 cut(s) 46, 49, 52, 137, 286
Sau3AI GATC 5 cut(s) 145, 370, 471, 524, 537
Sau96I GGNCC 4 cut(s) 15, 79, 88, 515
SchI GAGTC 3 cut(s) 171, 176, 269
ScrFI CCNGG 8 cut(s) 86, 116, 212, 265, 315, 434, 446, 498
SduI GDGCHC 1 cut(s) 444
SetI ASST 8 cut(s) 243, 269, 351, 435, 444, 462, 535, 610
SexAI ACCWGGT 1 cut(s) 432
SfaNI GCATC 2 cut(s) 186, 297
SfoI GGCGCC 1 cut(s) 466
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 2 cut(s) 15, 88
SmiMI CAYNNNNRTG 1 cut(s) 275
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 4 cut(s) 137, 283, 285, 475
SspDI GGCGCC 1 cut(s) 464
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 444
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 8 cut(s) 84, 114, 210, 263, 313, 432, 444, 496
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 462, 535
TaqI TCGA 7 cut(s) 144, 180, 243, 438, 489, 523, 536
TatI WGTACW 1 cut(s) 168
TauI GCSGC 2 cut(s) 139, 288
TfiI GAWTC 2 cut(s) 491, 520
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 3 cut(s) 45, 48, 51
Tsp45I GTSAC 1 cut(s) 455
TspGWI ACGGA 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 2 cut(s) 15, 88
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.