Prupe.1G564500_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004760
Physical Location & Seq
Forward (+)
46107827 .. 46112005
4179 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G564500.1

Sequence Viewer

Length: 840 bp
ATGACATCAAGAGCCAACCCGAACCCGACCCCCAATGGAACCGCAAACGGCGAGCACAGACCACGGGGCCCACCTCCACGACCACCACCGTCGTCGTCAAACCCCCATAACAGCAACCACCACCCCTACTACCCAACGACGTCATCTTCCTCCTCCTCCTCAGCCTCCTTCAAAGGCTGCTGTTGCTGCCTCTTCCTACTCTTCTCATTCCTCGCCCTCCTGGTCCTCGCCGTCGTACTCGTCATTATCCTCGCCGTCAAGCCCAAGAAGCCGCAGTTCGATCTCCAGCAAGTCGGTGTCCAATACATGGGCATCAACTCACCCAATCCCACCCCCGCCGCCGCCGCAACCGCCGACCCCAACCAAAACCCTACCTCCGCCTCCCTCTCCCTCAGCATCCGCATGCTCTTCTCCGCCGTGAACCCTAACAAGGTCGGGATCAGGTACGGCGAGTCCAGGTTCACCGTCATGTACCGCGGGATCCCATTGGGCAAGGCCTCCGTGCCCGGGTTCTTCCAGGACGCGCACACTGTACGGCAAGTCGTCGCCACCATCTCCGTCGATCGAGTCAATTTGCTTCAGGCCGACGCCGCCGATTTGATCCGAGACGCTTCGCTCAACGACCGCGTCGAGCTCAGGGTCTTGGGTGACGTTGGCGCCAAGATCCGCGTCTTGAACTTCGATTCCCCTGGCGTTCAGCATATTGAAAAGGGGGCTAGAGAGGGGAATGGGCATGGAAGAAAGCTTGGCTTTTATAATAACGGCCGTGGTGTCCGTGGATTGTGCAATTGTTATAAGTCCAAGGAAGCAGTCTCTTACTTACAAGCAGTGTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

280

Amino Acids

30.04

Weight (kDa)

9.75

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 756, 795
AatII GACGTC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 656
AccB7I CCANNNNNTGG 1 cut(s) 307
AccII CGCG 4 cut(s) 477, 524, 627, 669
AclWI GGATC 5 cut(s) 446, 475, 488, 595, 658
AcoI YGGCCR 1 cut(s) 763
AcuI CTGAAG 1 cut(s) 563
AcyI GRCGYC 3 cut(s) 140, 588, 657
AfaI GTAC 4 cut(s) 237, 446, 473, 534
AfiI CCNNNNNNNGG 3 cut(s) 307, 430, 507
AgsI TTSAA 3 cut(s) 172, 676, 707
AjnI CCWGG 4 cut(s) 219, 455, 516, 688
AloI GAACNNNNNNTCC 2 cut(s) 668, 700
AluBI AGCT 2 cut(s) 634, 745
AluI AGCT 2 cut(s) 634, 745
Alw21I GWGCWC 2 cut(s) 57, 636
Alw26I GTCTC 2 cut(s) 600, 817
AlwI GGATC 5 cut(s) 446, 475, 488, 595, 658
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 4 cut(s) 67, 495, 582, 763
ApaI GGGCCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 177, 186
AspLEI GCGC 2 cut(s) 526, 659
AspS9I GGNCC 3 cut(s) 67, 68, 223
AsuC2I CCSGG 2 cut(s) 507, 508
AsuHPI GGTGA 3 cut(s) 312, 454, 659
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 2 cut(s) 71, 507
BamHI GGATCC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 2 cut(s) 71, 636
Bbv12I GWGCWC 2 cut(s) 57, 636
BbvCI CCTCAGC 2 cut(s) 160, 392
BbvI GCAGC 2 cut(s) 164, 173
BccI CCATC 1 cut(s) 560
BceAI ACGGC 8 cut(s) 64, 215, 239, 401, 463, 551, 750, 778
BciT130I CCWGG 4 cut(s) 221, 457, 518, 690
BcnI CCSGG 2 cut(s) 507, 508
BcoDI GTCTC 2 cut(s) 600, 817
BfaI CTAG 1 cut(s) 717
BfoI RGCGCY 1 cut(s) 660
BisI GCNGC 7 cut(s) 178, 187, 272, 339, 342, 345, 591
BlsI GCNGC 7 cut(s) 179, 188, 273, 340, 343, 346, 592
Bme1390I CCNGG 6 cut(s) 221, 457, 507, 508, 518, 690
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 3 cut(s) 67, 68, 223
BmiI GGNNCC 5 cut(s) 40, 68, 69, 482, 658
BmrFI CCNGG 6 cut(s) 221, 457, 507, 508, 518, 690
BmsI GCATC 2 cut(s) 321, 405
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 3 cut(s) 160, 392, 635
BpuMI CCSGG 2 cut(s) 507, 508
BsaHI GRCGYC 3 cut(s) 140, 588, 657
BsaJI CCNNGG 7 cut(s) 62, 475, 506, 688, 766, 775, 801
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 430, 507
BseBI CCWGG 4 cut(s) 221, 457, 518, 690
BseDI CCNNGG 7 cut(s) 62, 475, 506, 688, 766, 775, 801
BseGI GGATG 1 cut(s) 396
BseLI CCNNNNNNNGG 3 cut(s) 307, 430, 507
BseMII CTCAG 3 cut(s) 174, 406, 649
BseRI GAGGAG 3 cut(s) 142, 145, 148
BseSI GKGCMC 2 cut(s) 71, 507
BseX3I CGGCCG 1 cut(s) 763
BseXI GCAGC 2 cut(s) 164, 173
Bsh1236I CGCG 4 cut(s) 477, 524, 627, 669
Bsh1285I CGRYCG 3 cut(s) 565, 625, 766
BshFI GGCC 4 cut(s) 69, 497, 584, 765
BshNI GGYRCC 1 cut(s) 656
BsiEI CGRYCG 3 cut(s) 565, 625, 766
BsiHKAI GWGCWC 2 cut(s) 57, 636
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 1 cut(s) 507
BslI CCNNNNNNNGG 3 cut(s) 307, 430, 507
BsmAI GTCTC 2 cut(s) 600, 817
BsmBI CGTCTC 1 cut(s) 600
BsnI GGCC 4 cut(s) 69, 497, 584, 765
BsoBI CYCGRG 1 cut(s) 506
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 4 cut(s) 57, 71, 507, 636
Bsp143I GATC 6 cut(s) 280, 438, 480, 562, 600, 663
BspANI GGCC 4 cut(s) 69, 497, 584, 765
BspCNI CTCAG 3 cut(s) 173, 405, 648
BspFNI CGCG 4 cut(s) 477, 524, 627, 669
BspLI GGNNCC 5 cut(s) 40, 68, 69, 482, 658
BspPI GGATC 5 cut(s) 446, 475, 488, 595, 658
BspQI GCTCTTC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 656
BssECI CCNNGG 7 cut(s) 62, 475, 506, 688, 766, 775, 801
BssMI GATC 6 cut(s) 280, 438, 480, 562, 600, 663
BssNI GRCGYC 3 cut(s) 140, 588, 657
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 4 cut(s) 221, 457, 518, 690
Bst4CI ACNGT 3 cut(s) 90, 466, 532
Bst6I CTCTTC 3 cut(s) 197, 206, 413
BstACI GRCGYC 3 cut(s) 140, 588, 657
BstC8I GCNNGC 2 cut(s) 53, 404
BstDEI CTNAG 3 cut(s) 160, 392, 635
BstDSI CCRYGG 4 cut(s) 62, 475, 766, 775
BstF5I GGATG 1 cut(s) 396
BstFNI CGCG 4 cut(s) 477, 524, 627, 669
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 2 cut(s) 526, 659
BstKTI GATC 6 cut(s) 283, 441, 483, 565, 603, 666
BstMAI GTCTC 2 cut(s) 600, 817
BstMBI GATC 6 cut(s) 280, 438, 480, 562, 600, 663
BstMCI CGRYCG 3 cut(s) 565, 625, 766
BstMWI GCNNNNNNNGC 6 cut(s) 183, 186, 268, 344, 350, 590
BstNI CCWGG 4 cut(s) 221, 457, 518, 690
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 6 cut(s) 219, 455, 505, 506, 516, 688
BstSLI GKGCMC 2 cut(s) 71, 507
BstUI CGCG 4 cut(s) 477, 524, 627, 669
BstV1I GCAGC 2 cut(s) 164, 173
BstX2I RGATCY 2 cut(s) 480, 663
BstYI RGATCY 2 cut(s) 480, 663
BstZI CGGCCG 1 cut(s) 763
BsuRI GGCC 4 cut(s) 69, 497, 584, 765
BtgI CCRYGG 4 cut(s) 62, 475, 766, 775
BtsCI GGATG 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 2 cut(s) 528, 834
Cac8I GCNNGC 2 cut(s) 53, 404
CfoI GCGC 2 cut(s) 526, 659
Cfr13I GGNCC 3 cut(s) 67, 68, 223
Cfr42I CCGCGG 1 cut(s) 478
Cfr9I CCCGGG 1 cut(s) 506
CseI GACGC 5 cut(s) 530, 596, 616, 617, 658
Csp6I GTAC 4 cut(s) 236, 445, 472, 533
CspCI CAANNNNNGTGG 1 cut(s) 812
CviAII CATG 4 cut(s) 307, 403, 469, 734
CviQI GTAC 4 cut(s) 236, 445, 472, 533
DdeI CTNAG 3 cut(s) 160, 392, 635
DinI GGCGCC 1 cut(s) 658
DpnI GATC 6 cut(s) 282, 440, 482, 564, 602, 665
DpnII GATC 6 cut(s) 280, 438, 480, 562, 600, 663
EaeI YGGCCR 1 cut(s) 763
EagI CGGCCG 1 cut(s) 763
Eam1104I CTCTTC 3 cut(s) 197, 206, 413
EarI CTCTTC 3 cut(s) 197, 206, 413
EciI GGCGGA 2 cut(s) 367, 403
Ecl136II GAGCTC 1 cut(s) 634
EclXI CGGCCG 1 cut(s) 763
Eco130I CCWWGG 1 cut(s) 801
Eco147I AGGCCT 1 cut(s) 497
Eco24I GRGCYC 2 cut(s) 71, 636
Eco47I GGWCC 1 cut(s) 223
Eco52I CGGCCG 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 506
EcoICRI GAGCTC 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 4 cut(s) 219, 455, 516, 688
EcoT14I CCWWGG 1 cut(s) 801
EcoT38I GRGCYC 2 cut(s) 71, 636
EgeI GGCGCC 1 cut(s) 658
EheI GGCGCC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 801
Esp3I CGTCTC 1 cut(s) 600
FaeI CATG 4 cut(s) 310, 406, 472, 737
FaiI YATR 8 cut(s) 108, 308, 404, 470, 702, 735, 756, 795
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FatI CATG 4 cut(s) 306, 402, 468, 733
FauI CCCGC 2 cut(s) 343, 470
Fnu4HI GCNGC 7 cut(s) 178, 187, 272, 339, 342, 345, 591
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 2 cut(s) 71, 636
Fsp4HI GCNGC 7 cut(s) 178, 187, 272, 339, 342, 345, 591
FspBI CTAG 1 cut(s) 717
GlaI GCGC 2 cut(s) 525, 658
GluI GCNGC 7 cut(s) 178, 187, 272, 339, 342, 345, 591
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 4 cut(s) 69, 497, 584, 765
HapII CCGG 1 cut(s) 507
HgaI GACGC 5 cut(s) 530, 596, 616, 617, 658
HhaI GCGC 2 cut(s) 526, 659
Hin1I GRCGYC 3 cut(s) 140, 588, 657
Hin1II CATG 4 cut(s) 310, 406, 472, 737
Hin6I GCGC 2 cut(s) 524, 657
HinP1I GCGC 2 cut(s) 524, 657
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 3 cut(s) 452, 567, 683
HpaII CCGG 1 cut(s) 507
HphI GGTGA 3 cut(s) 312, 454, 659
Hpy166II GTNNAC 2 cut(s) 421, 462
Hpy188I TCNGA 1 cut(s) 605
Hpy188III TCNNGA 3 cut(s) 9, 436, 673
Hpy8I GTNNAC 2 cut(s) 421, 462
Hpy99I CGWCG 8 cut(s) 94, 97, 142, 236, 548, 563, 590, 632
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 90, 466, 532
HpyCH4IV ACGT 2 cut(s) 140, 651
HpyCH4V TGCA 1 cut(s) 786
HpyF10VI GCNNNNNNNGC 6 cut(s) 183, 186, 268, 344, 350, 590
HpyF3I CTNAG 3 cut(s) 160, 392, 635
HpySE526I ACGT 2 cut(s) 140, 651
Hsp92I GRCGYC 3 cut(s) 140, 588, 657
Hsp92II CATG 4 cut(s) 310, 406, 472, 737
HspAI GCGC 2 cut(s) 524, 657
KasI GGCGCC 1 cut(s) 656
KspI CCGCGG 1 cut(s) 478
Kzo9I GATC 6 cut(s) 280, 438, 480, 562, 600, 663
LguI GCTCTTC 1 cut(s) 413
Lsp1109I GCAGC 2 cut(s) 164, 173
LweI GCATC 2 cut(s) 321, 405
MaeI CTAG 1 cut(s) 717
MaeII ACGT 2 cut(s) 140, 651
MaeIII GTNAC 1 cut(s) 647
MalI GATC 6 cut(s) 282, 440, 482, 564, 602, 665
MboI GATC 6 cut(s) 280, 438, 480, 562, 600, 663
MboII GAAGA 6 cut(s) 138, 184, 193, 400, 505, 750
MfeI CAATTG 1 cut(s) 787
MflI RGATCY 2 cut(s) 480, 663
MhlI GDGCHC 4 cut(s) 57, 71, 507, 636
MluCI AATT 2 cut(s) 571, 787
Mly113I GGCGCC 1 cut(s) 657
MlyI GAGTC 2 cut(s) 461, 576
MslI CAYNNNNRTG 2 cut(s) 401, 467
MspA1I CMGCKG 1 cut(s) 477
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 6 cut(s) 221, 457, 507, 508, 518, 690
MunI CAATTG 1 cut(s) 787
MvaI CCWGG 4 cut(s) 221, 457, 518, 690
MvnI CGCG 4 cut(s) 477, 524, 627, 669
MwoI GCNNNNNNNGC 6 cut(s) 183, 186, 268, 344, 350, 590
NarI GGCGCC 1 cut(s) 657
NciI CCSGG 2 cut(s) 507, 508
NdeII GATC 6 cut(s) 280, 438, 480, 562, 600, 663
NlaIII CATG 4 cut(s) 310, 406, 472, 737
NlaIV GGNNCC 5 cut(s) 40, 68, 69, 482, 658
NmuCI GTSAC 1 cut(s) 647
NspI RCATGY 1 cut(s) 406
PaeI GCATGC 1 cut(s) 406
PceI AGGCCT 1 cut(s) 497
PciSI GCTCTTC 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PfeI GAWTC 1 cut(s) 683
PflFI GACNNNGTC 1 cut(s) 626
PflMI CCANNNNNTGG 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 7 cut(s) 179, 188, 273, 340, 343, 346, 592
Ple19I CGATCG 1 cut(s) 565
PleI GAGTC 2 cut(s) 460, 575
PluTI GGCGCC 1 cut(s) 660
PpsI GAGTC 2 cut(s) 460, 575
PsiI TTATAA 2 cut(s) 756, 795
Psp124BI GAGCTC 1 cut(s) 636
Psp6I CCWGG 4 cut(s) 219, 455, 516, 688
PspGI CCWGG 4 cut(s) 219, 455, 516, 688
PspN4I GGNNCC 5 cut(s) 40, 68, 69, 482, 658
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 67, 68, 223
PsuI RGATCY 2 cut(s) 480, 663
PsyI GACNNNGTC 1 cut(s) 626
PvuI CGATCG 1 cut(s) 565
RsaI GTAC 4 cut(s) 237, 446, 473, 534
RsaNI GTAC 4 cut(s) 236, 445, 472, 533
RseI CAYNNNNRTG 2 cut(s) 401, 467
SacI GAGCTC 1 cut(s) 636
SacII CCGCGG 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 413
SatI GCNGC 7 cut(s) 178, 187, 272, 339, 342, 345, 591
Sau3AI GATC 6 cut(s) 280, 438, 480, 562, 600, 663
Sau96I GGNCC 3 cut(s) 67, 68, 223
SchI GAGTC 2 cut(s) 461, 576
ScrFI CCNGG 6 cut(s) 221, 457, 507, 508, 518, 690
SduI GDGCHC 4 cut(s) 57, 71, 507, 636
SetI ASST 9 cut(s) 76, 143, 377, 435, 446, 461, 636, 654, 747
SfaNI GCATC 2 cut(s) 321, 405
SfoI GGCGCC 1 cut(s) 658
Sfr303I CCGCGG 1 cut(s) 478
SgrBI CCGCGG 1 cut(s) 478
SinI GGWCC 1 cut(s) 223
SmaI CCCGGG 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 401, 467
SphI GCATGC 1 cut(s) 406
Sse9I AATT 2 cut(s) 571, 787
SseBI AGGCCT 1 cut(s) 497
SspDI GGCGCC 1 cut(s) 656
SspMI CTAG 1 cut(s) 717
SstI GAGCTC 1 cut(s) 636
StuI AGGCCT 1 cut(s) 497
StyD4I CCNGG 6 cut(s) 219, 455, 505, 506, 516, 688
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 3 cut(s) 90, 466, 532
TaiI ACGT 2 cut(s) 143, 654
TaqI TCGA 5 cut(s) 279, 561, 565, 630, 681
TasI AATT 2 cut(s) 571, 787
TauI GCSGC 5 cut(s) 274, 341, 344, 347, 593
TfiI GAWTC 1 cut(s) 683
TscAI CASTG 2 cut(s) 535, 834
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 2 cut(s) 177, 186
Tsp45I GTSAC 1 cut(s) 647
TspGWI ACGGA 3 cut(s) 490, 547, 764
TspMI CCCGGG 1 cut(s) 506
TspRI CASTG 2 cut(s) 535, 834
Tth111I GACNNNGTC 1 cut(s) 626
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 1 cut(s) 406
XmaI CCCGGG 1 cut(s) 506
XspI CTAG 1 cut(s) 717
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.