Rw7G030570

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004760
Physical Location & Seq
Reverse (-)
43385887 .. 43389853
3967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030570.1

Sequence Viewer

Length: 810 bp
ATGGCATCATCATCAAGAGCCACCGCCAACTCCCACAGACCCGCCGCCGCCCACGCCAACGGGCCCACCGCAAACGGCGACCACCACAGGCCCACCGCAAACGGCGACCACCACAGGCCGTCAAACCACAGCCACAGCAGCGGCAGCGGCAACGGGCACCAGCACTACTACCCCCCAACGACGCCGTATCGGTCGTCGTCCTCGTCGGCTTCGTTTAGAGGCTGCTGCTGCTGCCTGTTCCTGCTCTTCTCCCTCCTGGCGCTCCTGGTCCTGGCCGTCGTGCTCGTCATAATCCTGGCCGTGAAACCCAAGAAGCCGCAGTTCGATCTCCAACAAGTAGGAGTCCAGTACATGGGCATCAACTCGCCCAATCCCACCACCGACCCGAACCCGGCCTCCTCCGCCTCTCTCTCCCTCAGCATTCGCCTGCTCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGCATCCCTCTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGCAGGTCGTCGCCACCATCGCCGTCGATCGCGCCAATCTCATTCAGGCCGACGCCGCCGACTTAATCCGCGACGCCTCCCTCAACGACCGGGTCGAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGATTCCCCGGGCGTTCAGGTTTCCGTGGATTGTGCAATCGTTATAAGTCCAAGGAAGCAGTCTCTTACTTACAAGCAGTGTGGATTTGATGGATTGAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

269

Amino Acids

28.69

Weight (kDa)

9.45

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 145 - 243 1.8e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AatII GACGTC 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 553
AccB1I GGYRCC 2 cut(s) 156, 680
AccB7I CCANNNNNTGG 1 cut(s) 352
AccII CGCG 4 cut(s) 501, 591, 630, 693
AclWI GGATC 1 cut(s) 682
AcoI YGGCCR 2 cut(s) 273, 297
AcyI GRCGYC 5 cut(s) 182, 612, 633, 675, 681
AfaI GTAC 3 cut(s) 350, 470, 497
AfiI CCNNNNNNNGG 5 cut(s) 271, 352, 391, 454, 667
AgsI TTSAA 1 cut(s) 700
AjnI CCWGG 5 cut(s) 255, 264, 270, 294, 479
AloI GAACNNNNNNTCC 4 cut(s) 380, 412, 692, 724
AluBI AGCT 1 cut(s) 658
AluI AGCT 1 cut(s) 658
Alw21I GWGCWC 2 cut(s) 285, 660
Alw26I GTCTC 1 cut(s) 771
AlwI GGATC 1 cut(s) 682
Ama87I CYCGRG 1 cut(s) 712
AoxI GGCC 9 cut(s) 62, 89, 116, 273, 297, 393, 519, 546, 606
ApaI GGGCCC 1 cut(s) 66
ApeKI GCWGC 6 cut(s) 138, 144, 222, 225, 228, 231
AspLEI GCGC 3 cut(s) 262, 593, 683
AspS9I GGNCC 5 cut(s) 62, 63, 90, 268, 547
AsuC2I CCSGG 6 cut(s) 392, 531, 650, 662, 713, 714
AsuHPI GGTGA 1 cut(s) 683
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 1 cut(s) 268
BaeGI GKGCMC 2 cut(s) 66, 159
BanI GGYRCC 2 cut(s) 156, 680
BanII GRGCYC 2 cut(s) 66, 660
Bbv12I GWGCWC 2 cut(s) 285, 660
BbvCI CCTCAGC 1 cut(s) 416
BbvI GCAGC 6 cut(s) 150, 156, 209, 212, 215, 218
BccI CCATC 2 cut(s) 584, 788
BceAI ACGGC 8 cut(s) 91, 103, 118, 169, 260, 284, 487, 566
BciT130I CCWGG 5 cut(s) 257, 266, 272, 296, 481
BcnI CCSGG 6 cut(s) 392, 531, 650, 662, 713, 714
BcoDI GTCTC 1 cut(s) 771
BfoI RGCGCY 2 cut(s) 263, 684
BfuAI ACCTGC 1 cut(s) 553
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 5 cut(s) 62, 63, 90, 268, 547
BmiI GGNNCC 3 cut(s) 64, 158, 682
BmsI GCATC 3 cut(s) 14, 366, 513
Bpu10I CCTNAGC 1 cut(s) 416
BpuMI CCSGG 6 cut(s) 392, 531, 650, 662, 713, 714
Bsa29I ATCGAT 1 cut(s) 705
BsaHI GRCGYC 5 cut(s) 182, 612, 633, 675, 681
BsaJI CCNNGG 6 cut(s) 499, 529, 711, 712, 729, 755
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 5 cut(s) 271, 352, 391, 454, 667
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 5 cut(s) 257, 266, 272, 296, 481
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 6 cut(s) 499, 529, 711, 712, 729, 755
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 5 cut(s) 271, 352, 391, 454, 667
BseMII CTCAG 1 cut(s) 430
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 388
BseSI GKGCMC 2 cut(s) 66, 159
BseXI GCAGC 6 cut(s) 150, 156, 209, 212, 215, 218
Bsh1236I CGCG 4 cut(s) 501, 591, 630, 693
Bsh1285I CGRYCG 3 cut(s) 194, 589, 649
BshFI GGCC 9 cut(s) 64, 91, 118, 275, 299, 395, 521, 548, 608
BshNI GGYRCC 2 cut(s) 156, 680
BshVI ATCGAT 1 cut(s) 705
BsiEI CGRYCG 3 cut(s) 194, 589, 649
BsiHKAI GWGCWC 2 cut(s) 285, 660
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 5 cut(s) 392, 531, 649, 661, 713
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 5 cut(s) 271, 352, 391, 454, 667
BsmAI GTCTC 1 cut(s) 771
BsmFI GGGAC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 9 cut(s) 64, 91, 118, 275, 299, 395, 521, 548, 608
BsoBI CYCGRG 1 cut(s) 712
Bsp120I GGGCCC 1 cut(s) 62
Bsp1286I GDGCHC 4 cut(s) 66, 159, 285, 660
Bsp143I GATC 3 cut(s) 325, 586, 687
BspANI GGCC 9 cut(s) 64, 91, 118, 275, 299, 395, 521, 548, 608
BspCNI CTCAG 1 cut(s) 429
BspDI ATCGAT 1 cut(s) 705
BspFNI CGCG 4 cut(s) 501, 591, 630, 693
BspLI GGNNCC 3 cut(s) 64, 158, 682
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 1 cut(s) 682
BspQI GCTCTTC 2 cut(s) 251, 437
BspT107I GGYRCC 2 cut(s) 156, 680
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 6 cut(s) 499, 529, 711, 712, 729, 755
BssMI GATC 3 cut(s) 325, 586, 687
BssNI GRCGYC 5 cut(s) 182, 612, 633, 675, 681
BssT1I CCWWGG 1 cut(s) 755
Bst2UI CCWGG 5 cut(s) 257, 266, 272, 296, 481
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 2 cut(s) 251, 437
BstACI GRCGYC 5 cut(s) 182, 612, 633, 675, 681
BstC8I GCNNGC 2 cut(s) 428, 546
BstDEI CTNAG 1 cut(s) 416
BstDSI CCRYGG 2 cut(s) 499, 729
BstF5I GGATG 1 cut(s) 504
BstFNI CGCG 4 cut(s) 501, 591, 630, 693
BstH2I RGCGCY 2 cut(s) 263, 684
BstHHI GCGC 3 cut(s) 262, 593, 683
BstKTI GATC 3 cut(s) 328, 589, 690
BstMAI GTCTC 1 cut(s) 771
BstMBI GATC 3 cut(s) 325, 586, 687
BstMCI CGRYCG 3 cut(s) 194, 589, 649
BstMWI GCNNNNNNNGC 9 cut(s) 53, 138, 144, 147, 228, 231, 401, 578, 614
BstNI CCWGG 5 cut(s) 257, 266, 272, 296, 481
BstSLI GKGCMC 2 cut(s) 66, 159
BstUI CGCG 4 cut(s) 501, 591, 630, 693
BstV1I GCAGC 6 cut(s) 150, 156, 209, 212, 215, 218
BstX2I RGATCY 1 cut(s) 687
BstYI RGATCY 1 cut(s) 687
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 9 cut(s) 64, 91, 118, 275, 299, 395, 521, 548, 608
BsuTUI ATCGAT 1 cut(s) 705
BtgI CCRYGG 2 cut(s) 499, 729
BtgZI GCGATG 1 cut(s) 562
BtsCI GGATG 1 cut(s) 504
BtsI GCAGTG 1 cut(s) 788
BtsIMutI CAGTG 2 cut(s) 486, 788
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 2 cut(s) 428, 546
CfoI GCGC 3 cut(s) 262, 593, 683
Cfr13I GGNCC 5 cut(s) 62, 63, 90, 268, 547
Cfr42I CCGCGG 1 cut(s) 502
Cfr9I CCCGGG 1 cut(s) 712
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 5 cut(s) 190, 544, 620, 641, 682
Csp6I GTAC 3 cut(s) 349, 469, 496
CspCI CAANNNNNGTGG 2 cut(s) 766, 801
CviAII CATG 2 cut(s) 352, 493
CviQI GTAC 3 cut(s) 349, 469, 496
DdeI CTNAG 1 cut(s) 416
DinI GGCGCC 1 cut(s) 682
DpnI GATC 3 cut(s) 327, 588, 689
DpnII GATC 3 cut(s) 325, 586, 687
EaeI YGGCCR 2 cut(s) 273, 297
Eam1104I CTCTTC 2 cut(s) 251, 437
EarI CTCTTC 2 cut(s) 251, 437
EciI GGCGGA 2 cut(s) 391, 427
Ecl136II GAGCTC 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 755
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 2 cut(s) 66, 660
Eco47I GGWCC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 658
Eco88I CYCGRG 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 658
EcoRII CCWGG 5 cut(s) 255, 264, 270, 294, 479
EcoT14I CCWWGG 1 cut(s) 755
EcoT38I GRGCYC 2 cut(s) 66, 660
EgeI GGCGCC 1 cut(s) 682
EheI GGCGCC 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 755
FaeI CATG 2 cut(s) 355, 496
FaiI YATR 4 cut(s) 290, 353, 494, 749
FaqI GGGAC 1 cut(s) 512
FatI CATG 2 cut(s) 351, 492
FauI CCCGC 1 cut(s) 49
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 2 cut(s) 66, 660
GlaI GCGC 3 cut(s) 261, 592, 682
HaeII RGCGCY 2 cut(s) 263, 684
HaeIII GGCC 9 cut(s) 64, 91, 118, 275, 299, 395, 521, 548, 608
HapII CCGG 5 cut(s) 392, 531, 649, 661, 713
HgaI GACGC 5 cut(s) 190, 544, 620, 641, 682
HhaI GCGC 3 cut(s) 262, 593, 683
Hin1I GRCGYC 5 cut(s) 182, 612, 633, 675, 681
Hin1II CATG 2 cut(s) 355, 496
Hin6I GCGC 3 cut(s) 260, 591, 681
HinP1I GCGC 3 cut(s) 260, 591, 681
HinfI GANTC 4 cut(s) 342, 462, 476, 707
HpaII CCGG 5 cut(s) 392, 531, 649, 661, 713
HphI GGTGA 1 cut(s) 683
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 1 cut(s) 461
Hpy188III TCNNGA 2 cut(s) 15, 697
Hpy8I GTNNAC 1 cut(s) 486
Hpy99I CGWCG 9 cut(s) 184, 199, 208, 281, 572, 587, 614, 635, 680
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 1 cut(s) 740
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 138, 144, 147, 228, 231, 401, 578, 614
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 1 cut(s) 675
Hsp92I GRCGYC 5 cut(s) 182, 612, 633, 675, 681
Hsp92II CATG 2 cut(s) 355, 496
HspAI GCGC 3 cut(s) 260, 591, 681
KasI GGCGCC 1 cut(s) 680
KspI CCGCGG 1 cut(s) 502
Kzo9I GATC 3 cut(s) 325, 586, 687
LguI GCTCTTC 2 cut(s) 251, 437
LmnI GCTCC 2 cut(s) 267, 663
Lsp1109I GCAGC 6 cut(s) 150, 156, 209, 212, 215, 218
LweI GCATC 3 cut(s) 14, 366, 513
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 1 cut(s) 671
MalI GATC 3 cut(s) 327, 588, 689
MboI GATC 3 cut(s) 325, 586, 687
MboII GAAGA 3 cut(s) 238, 424, 529
MflI RGATCY 1 cut(s) 687
MhlI GDGCHC 4 cut(s) 66, 159, 285, 660
Mly113I GGCGCC 1 cut(s) 681
MlyI GAGTC 2 cut(s) 351, 485
MmeI TCCRAC 2 cut(s) 355, 439
MseI TTAA 1 cut(s) 623
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 3 cut(s) 141, 147, 501
MspI CCGG 5 cut(s) 392, 531, 649, 661, 713
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 5 cut(s) 257, 266, 272, 296, 481
MvnI CGCG 4 cut(s) 501, 591, 630, 693
MwoI GCNNNNNNNGC 9 cut(s) 53, 138, 144, 147, 228, 231, 401, 578, 614
NarI GGCGCC 1 cut(s) 681
NciI CCSGG 6 cut(s) 392, 531, 650, 662, 713, 714
NdeII GATC 3 cut(s) 325, 586, 687
NlaIII CATG 2 cut(s) 355, 496
NlaIV GGNNCC 3 cut(s) 64, 158, 682
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 671
PceI AGGCCT 1 cut(s) 521
PciSI GCTCTTC 2 cut(s) 251, 437
PcsI WCGNNNNNNNCGW 3 cut(s) 200, 209, 651
PctI GAATGC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 462, 707
PflFI GACNNNGTC 1 cut(s) 650
PflMI CCANNNNNTGG 1 cut(s) 352
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 2 cut(s) 350, 484
PluTI GGCGCC 1 cut(s) 684
PpsI GAGTC 2 cut(s) 350, 484
PsiI TTATAA 1 cut(s) 749
Psp124BI GAGCTC 1 cut(s) 660
Psp6I CCWGG 5 cut(s) 255, 264, 270, 294, 479
PspGI CCWGG 5 cut(s) 255, 264, 270, 294, 479
PspN4I GGNNCC 3 cut(s) 64, 158, 682
PspOMI GGGCCC 1 cut(s) 62
PspPI GGNCC 5 cut(s) 62, 63, 90, 268, 547
PsuI RGATCY 1 cut(s) 687
PsyI GACNNNGTC 1 cut(s) 650
PvuI CGATCG 1 cut(s) 589
RsaI GTAC 3 cut(s) 350, 470, 497
RsaNI GTAC 3 cut(s) 349, 469, 496
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 660
SacII CCGCGG 1 cut(s) 502
SapI GCTCTTC 2 cut(s) 251, 437
SaqAI TTAA 1 cut(s) 623
Sau3AI GATC 3 cut(s) 325, 586, 687
Sau96I GGNCC 5 cut(s) 62, 63, 90, 268, 547
SchI GAGTC 2 cut(s) 351, 485
SduI GDGCHC 4 cut(s) 66, 159, 285, 660
SetI ASST 6 cut(s) 459, 485, 567, 660, 678, 726
SfaNI GCATC 3 cut(s) 14, 366, 513
SfoI GGCGCC 1 cut(s) 682
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 1 cut(s) 268
SmaI CCCGGG 1 cut(s) 714
SmiMI CAYNNNNRTG 1 cut(s) 491
SseBI AGGCCT 1 cut(s) 521
SspDI GGCGCC 1 cut(s) 680
SstI GAGCTC 1 cut(s) 660
StuI AGGCCT 1 cut(s) 521
StyI CCWWGG 1 cut(s) 755
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 1 cut(s) 678
TaqI TCGA 4 cut(s) 324, 585, 654, 705
TaqII GACCGA 1 cut(s) 180
TatI WGTACW 1 cut(s) 348
TauI GCSGC 7 cut(s) 47, 50, 144, 150, 319, 504, 617
TfiI GAWTC 2 cut(s) 462, 707
Tru1I TTAA 1 cut(s) 623
Tru9I TTAA 1 cut(s) 623
TscAI CASTG 2 cut(s) 493, 788
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 6 cut(s) 138, 144, 222, 225, 228, 231
Tsp45I GTSAC 1 cut(s) 671
TspGWI ACGGA 2 cut(s) 514, 718
TspMI CCCGGG 1 cut(s) 712
TspRI CASTG 2 cut(s) 493, 788
Tth111I GACNNNGTC 1 cut(s) 650
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 268
XmaI CCCGGG 1 cut(s) 712
ZraI GACGTC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.