Rh4DG006000

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004760
Physical Location & Seq
Reverse (-)
1057605 .. 1058168
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG006000.1

Sequence Viewer

Length: 564 bp
ATGACGCCGTATCGGTCCTCGTCCTCGTCGGCTTCGTTCAAAGGCTGCTGCTGTTGCCTCTTCCTGCTTTTCTCCTTCCTGGCGCTCCTGGTCCTGGCCATCGTCCTCGTGATAATCCTGGCCGTGAAACCCAAGAAGCCGCAGTTCGATCTCCAACAAGTAGGAGTCCAGTACACGGGCATCAACTCACCCAATCCCACTACCGACCCGAACCCGGCCTCCTCCGCCTCTCTCTCCCTCATCATTCGCCTGCTCTTCTCCGCCGAGAACCCCAACAAGGTCAGAATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGCATCCCTTTGGGCAAGGCCTCTGTCCCCGGCTTCTTCCAGCAGGCCCACAGCATCAGGCAGGTCGTCGCCACCATCACCGTCGATCGCTCCAATCTCATTAAGGTCGACGCCGCCGATTTAATCCCCGACGCCTCCCTCAACGACCGGGTCCAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGATTCTCCATGGTGGAAGGCGACTGGGCCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

187

Amino Acids

20.38

Weight (kDa)

9.69

Isoelectric Point (pI)

25.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 86 - 166 1.1e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 501
Acc36I ACCTGC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 503
AccI GTMKAC 1 cut(s) 432
AccII CGCG 2 cut(s) 324, 516
AciI CCGC 7 cut(s) 140, 225, 261, 322, 324, 438, 514
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 2 cut(s) 96, 120
AcyI GRCGYC 5 cut(s) 5, 435, 456, 498, 504
AfaI GTAC 3 cut(s) 173, 293, 320
AfiI CCNNNNNNNGG 6 cut(s) 94, 175, 214, 277, 484, 490
AgsI TTSAA 2 cut(s) 40, 523
AjnI CCWGG 5 cut(s) 78, 87, 93, 117, 302
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 1 cut(s) 481
AluI AGCT 1 cut(s) 481
AlwI GGATC 1 cut(s) 505
AoxI GGCC 6 cut(s) 96, 120, 216, 342, 369, 554
ApeKI GCWGC 2 cut(s) 45, 48
AspLEI GCGC 2 cut(s) 85, 506
AspS9I GGNCC 5 cut(s) 15, 91, 370, 475, 554
AsuC2I CCSGG 4 cut(s) 215, 354, 473, 485
AsuHPI GGTGA 3 cut(s) 180, 394, 506
AvaII GGWCC 3 cut(s) 15, 91, 475
BalI TGGCCA 1 cut(s) 98
BanI GGYRCC 1 cut(s) 503
BauI CACGAG 1 cut(s) 107
BbvI GCAGC 2 cut(s) 32, 35
BccI CCATC 2 cut(s) 107, 407
BceAI ACGGC 2 cut(s) 107, 310
BciT130I CCWGG 5 cut(s) 80, 89, 95, 119, 304
BcnI CCSGG 4 cut(s) 215, 354, 473, 485
BfoI RGCGCY 2 cut(s) 86, 507
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 5 cut(s) 46, 49, 140, 325, 438
BlsI GCNGC 5 cut(s) 47, 50, 141, 326, 439
Bme1390I CCNGG 9 cut(s) 80, 89, 95, 119, 215, 304, 354, 473, 485
Bme18I GGWCC 3 cut(s) 15, 91, 475
BmgT120I GGNCC 5 cut(s) 15, 91, 370, 475, 554
BmiI GGNNCC 2 cut(s) 476, 505
BmrFI CCNGG 9 cut(s) 80, 89, 95, 119, 215, 304, 354, 473, 485
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 3 cut(s) 189, 336, 387
BmuI ACTGGG 1 cut(s) 561
BpuMI CCSGG 4 cut(s) 215, 354, 473, 485
Bsa29I ATCGAT 1 cut(s) 528
BsaHI GRCGYC 5 cut(s) 5, 435, 456, 498, 504
BsaJI CCNNGG 3 cut(s) 322, 352, 536
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 175, 214, 277, 484, 490
Bse1I ACTGG 2 cut(s) 169, 556
BseBI CCWGG 5 cut(s) 80, 89, 95, 119, 304
BseCI ATCGAT 1 cut(s) 528
BseDI CCNNGG 3 cut(s) 322, 352, 536
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 6 cut(s) 94, 175, 214, 277, 484, 490
BseNI ACTGG 2 cut(s) 169, 556
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 32, 35
Bsh1236I CGCG 2 cut(s) 324, 516
Bsh1285I CGRYCG 2 cut(s) 412, 472
BshFI GGCC 6 cut(s) 98, 122, 218, 344, 371, 556
BshNI GGYRCC 1 cut(s) 503
BshVI ATCGAT 1 cut(s) 528
BsiEI CGRYCG 2 cut(s) 412, 472
BsiSI CCGG 4 cut(s) 215, 354, 472, 484
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 6 cut(s) 94, 175, 214, 277, 484, 490
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 6 cut(s) 98, 122, 218, 344, 371, 556
Bsp143I GATC 3 cut(s) 148, 409, 510
Bsp19I CCATGG 1 cut(s) 536
BspACI CCGC 7 cut(s) 140, 225, 261, 322, 324, 438, 514
BspANI GGCC 6 cut(s) 98, 122, 218, 344, 371, 556
BspDI ATCGAT 1 cut(s) 528
BspFNI CGCG 2 cut(s) 324, 516
BspLI GGNNCC 2 cut(s) 476, 505
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 1 cut(s) 505
BspQI GCTCTTC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 503
BsrI ACTGG 2 cut(s) 169, 556
BssECI CCNNGG 3 cut(s) 322, 352, 536
BssMI GATC 3 cut(s) 148, 409, 510
BssNI GRCGYC 5 cut(s) 5, 435, 456, 498, 504
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 5 cut(s) 80, 89, 95, 119, 304
Bst4CI ACNGT 2 cut(s) 313, 406
Bst6I CTCTTC 2 cut(s) 65, 260
BstACI GRCGYC 5 cut(s) 5, 435, 456, 498, 504
BstC8I GCNNGC 2 cut(s) 251, 369
BstDSI CCRYGG 2 cut(s) 322, 536
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 2 cut(s) 324, 516
BstH2I RGCGCY 2 cut(s) 86, 507
BstHHI GCGC 2 cut(s) 85, 506
BstKTI GATC 3 cut(s) 151, 412, 513
BstMBI GATC 3 cut(s) 148, 409, 510
BstMCI CGRYCG 2 cut(s) 412, 472
BstMWI GCNNNNNNNGC 2 cut(s) 54, 224
BstNI CCWGG 5 cut(s) 80, 89, 95, 119, 304
BstSCI CCNGG 9 cut(s) 78, 87, 93, 117, 213, 302, 352, 471, 483
BstUI CGCG 2 cut(s) 324, 516
BstV1I GCAGC 2 cut(s) 32, 35
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
Bsu15I ATCGAT 1 cut(s) 528
BsuRI GGCC 6 cut(s) 98, 122, 218, 344, 371, 556
BsuTUI ATCGAT 1 cut(s) 528
BtgI CCRYGG 2 cut(s) 322, 536
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 251, 369
CfoI GCGC 2 cut(s) 85, 506
Cfr13I GGNCC 5 cut(s) 15, 91, 370, 475, 554
Cfr42I CCGCGG 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 528
CseI GACGC 4 cut(s) 13, 443, 464, 505
Csp6I GTAC 3 cut(s) 172, 292, 319
CviAII CATG 2 cut(s) 316, 537
CviQI GTAC 3 cut(s) 172, 292, 319
DinI GGCGCC 1 cut(s) 505
DpnI GATC 3 cut(s) 150, 411, 512
DpnII GATC 3 cut(s) 148, 409, 510
EaeI YGGCCR 2 cut(s) 96, 120
Eam1104I CTCTTC 2 cut(s) 65, 260
EarI CTCTTC 2 cut(s) 65, 260
EciI GGCGGA 2 cut(s) 214, 250
Eco130I CCWWGG 1 cut(s) 536
Eco147I AGGCCT 1 cut(s) 344
Eco47I GGWCC 3 cut(s) 15, 91, 475
EcoRII CCWGG 5 cut(s) 78, 87, 93, 117, 302
EcoT14I CCWWGG 1 cut(s) 536
EgeI GGCGCC 1 cut(s) 505
EheI GGCGCC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 536
FaeI CATG 2 cut(s) 319, 540
FaiI YATR 2 cut(s) 317, 538
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 315, 536
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 5 cut(s) 46, 49, 140, 325, 438
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 5 cut(s) 46, 49, 140, 325, 438
GlaI GCGC 2 cut(s) 84, 505
GluI GCNGC 5 cut(s) 46, 49, 140, 325, 438
HaeII RGCGCY 2 cut(s) 86, 507
HaeIII GGCC 6 cut(s) 98, 122, 218, 344, 371, 556
HapII CCGG 4 cut(s) 215, 354, 472, 484
HgaI GACGC 4 cut(s) 13, 443, 464, 505
HhaI GCGC 2 cut(s) 85, 506
Hin1I GRCGYC 5 cut(s) 5, 435, 456, 498, 504
Hin1II CATG 2 cut(s) 319, 540
Hin6I GCGC 2 cut(s) 83, 504
HinP1I GCGC 2 cut(s) 83, 504
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 4 cut(s) 165, 285, 299, 530
HpaII CCGG 4 cut(s) 215, 354, 472, 484
HphI GGTGA 3 cut(s) 180, 394, 506
Hpy166II GTNNAC 3 cut(s) 174, 309, 433
Hpy188I TCNGA 1 cut(s) 284
Hpy188III TCNNGA 2 cut(s) 109, 520
Hpy8I GTNNAC 3 cut(s) 174, 309, 433
Hpy99I CGWCG 6 cut(s) 31, 395, 410, 437, 458, 503
HpyAV CCTTC 2 cut(s) 85, 538
HpyCH4III ACNGT 2 cut(s) 313, 406
HpyCH4IV ACGT 1 cut(s) 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 224
HpySE526I ACGT 1 cut(s) 498
Hsp92I GRCGYC 5 cut(s) 5, 435, 456, 498, 504
Hsp92II CATG 2 cut(s) 319, 540
HspAI GCGC 2 cut(s) 83, 504
KasI GGCGCC 1 cut(s) 503
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 3 cut(s) 148, 409, 510
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 3 cut(s) 90, 419, 486
Lsp1109I GCAGC 2 cut(s) 32, 35
LweI GCATC 3 cut(s) 189, 336, 387
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 494
MalI GATC 3 cut(s) 150, 411, 512
MboI GATC 3 cut(s) 148, 409, 510
MboII GAAGA 3 cut(s) 52, 247, 352
MflI RGATCY 1 cut(s) 510
MlsI TGGCCA 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 98
Mly113I GGCGCC 1 cut(s) 504
MlyI GAGTC 2 cut(s) 174, 308
MmeI TCCRAC 1 cut(s) 178
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
MseI TTAA 2 cut(s) 426, 446
MslI CAYNNNNRTG 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 4 cut(s) 215, 354, 472, 484
MspR9I CCNGG 9 cut(s) 80, 89, 95, 119, 215, 304, 354, 473, 485
MvaI CCWGG 5 cut(s) 80, 89, 95, 119, 304
MvnI CGCG 2 cut(s) 324, 516
MwoI GCNNNNNNNGC 2 cut(s) 54, 224
NarI GGCGCC 1 cut(s) 504
NciI CCSGG 4 cut(s) 215, 354, 473, 485
NcoI CCATGG 1 cut(s) 536
NdeII GATC 3 cut(s) 148, 409, 510
NlaIII CATG 2 cut(s) 319, 540
NlaIV GGNNCC 2 cut(s) 476, 505
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 494
PceI AGGCCT 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 438
PfeI GAWTC 2 cut(s) 285, 530
PflFI GACNNNGTC 1 cut(s) 473
PkrI GCNGC 5 cut(s) 47, 50, 141, 326, 439
Ple19I CGATCG 1 cut(s) 412
PleI GAGTC 2 cut(s) 173, 307
PluTI GGCGCC 1 cut(s) 507
PpsI GAGTC 2 cut(s) 173, 307
Psp6I CCWGG 5 cut(s) 78, 87, 93, 117, 302
PspGI CCWGG 5 cut(s) 78, 87, 93, 117, 302
PspN4I GGNNCC 2 cut(s) 476, 505
PspPI GGNCC 5 cut(s) 15, 91, 370, 475, 554
PsuI RGATCY 1 cut(s) 510
PsyI GACNNNGTC 1 cut(s) 473
PvuI CGATCG 1 cut(s) 412
RsaI GTAC 3 cut(s) 173, 293, 320
RsaNI GTAC 3 cut(s) 172, 292, 319
RseI CAYNNNNRTG 1 cut(s) 314
SacII CCGCGG 1 cut(s) 325
SalI GTCGAC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 426, 446
SatI GCNGC 5 cut(s) 46, 49, 140, 325, 438
Sau3AI GATC 3 cut(s) 148, 409, 510
Sau96I GGNCC 5 cut(s) 15, 91, 370, 475, 554
SchI GAGTC 2 cut(s) 174, 308
ScrFI CCNGG 9 cut(s) 80, 89, 95, 119, 215, 304, 354, 473, 485
SetI ASST 6 cut(s) 282, 308, 390, 432, 483, 501
SfaNI GCATC 3 cut(s) 189, 336, 387
SfoI GGCGCC 1 cut(s) 505
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 3 cut(s) 15, 91, 475
SmiMI CAYNNNNRTG 1 cut(s) 314
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 7 cut(s) 140, 225, 261, 322, 324, 438, 514
SspDI GGCGCC 1 cut(s) 503
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 9 cut(s) 78, 87, 93, 117, 213, 302, 352, 471, 483
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 2 cut(s) 313, 406
TaiI ACGT 1 cut(s) 501
TaqI TCGA 4 cut(s) 147, 408, 432, 528
TatI WGTACW 1 cut(s) 171
TauI GCSGC 3 cut(s) 142, 327, 440
TfiI GAWTC 2 cut(s) 285, 530
Tru1I TTAA 2 cut(s) 426, 446
Tru9I TTAA 2 cut(s) 426, 446
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 2 cut(s) 45, 48
Tsp45I GTSAC 1 cut(s) 494
TspRI CASTG 1 cut(s) 316
Tth111I GACNNNGTC 1 cut(s) 473
VpaK11BI GGWCC 3 cut(s) 15, 91, 475
XmiI GTMKAC 1 cut(s) 432
ZraI GACGTC 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.