Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004760

Physical Location & Seq

Genomic Coordinates Forward (+)

25543092 .. 25543313

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1282800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTACAGCAGGATCTCATTGGGCAAGGCCTTCATCCCTGACTTTTACCAGGATGCCCACTTTGTCTGCCAAGTCGTTGCCACCATCACCATTTATCGAGTCAATTTGCTCCAAGCCGACACCGTCGATTTAGTTCAAGATGCTTCCCTCAATGACCGAGTCGAGCTCAGGGTCTTGGGTGATGTTGGTGCCAAGATCCACATCATGAAATTTTGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

74

Amino Acids

8.38

Weight (kDa)

6.0

Isoelectric Point (pI)

19.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01080
fragaria_vesca	FvH4_5g29780
malus_domestica	MD08G1227400.v1.1 MD15G1282800.v1.1 MD15G1419800.v1.1
prunus_persica	Prupe.1G564500_v2.0.a1 Prupe.1G564500_v2.0.a1
pyrus_communis	pycom08g19840 pycom15g37260
rosa_chinensis	RchiOBHm_Chr7g0223311
rosa_laevigata	RLG00000001988 RLG00000005097
rosa_multiflora	Rmu_sc0002048.1_g000033 Rmu_sc0005124.1_g000019
rosa_roxburghii	Rroxscaffold_3G00235920
rosa_rugosa	Rorug03G0301200 Rorug07G0216000
rosa_samantha	Rh1CG073700 Rh2AG559200 Rh2CG344100 Rh4DG006000 Rh5BG144700 Rh5DG181500 Rh6BG510000 Rh7AG359700 Rh7BG349600 Rh7CG378100 Rh7DG355000
rosa_wichuraiana	Rw1G025100 Rw7G030570 Rw7G038840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AclWI	GGATC	2 cut(s)	20, 190
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	20, 190
AoxI	GGCC	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	79, 191
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	43, 130
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	2 cut(s)	33, 58
BseJI	GATNNNNATC	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	12, 195
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	20, 190
BspT107I	GGYRCC	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	2 cut(s)	12, 195
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	33, 58
BstKTI	GATC	2 cut(s)	15, 198
BstMBI	GATC	2 cut(s)	12, 195
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstX2I	RGATCY	2 cut(s)	12, 195
BstYI	RGATCY	2 cut(s)	12, 195
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	33, 58
CciI	TCATGA	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	3 cut(s)	29, 116, 166
CviKI_1	RGCY	3 cut(s)	29, 116, 166
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	14, 197
DpnII	GATC	2 cut(s)	12, 195
Ecl136II	GAGCTC	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	1 cut(s)	208
FaiI	YATR	1 cut(s)	206
FatI	CATG	1 cut(s)	204
FokI	GGATG	2 cut(s)	20, 65
FriOI	GRGCYC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	99, 159
HphI	GGTGA	2 cut(s)	79, 191
Hpy188III	TCNNGA	2 cut(s)	137, 205
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	12, 195
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	4 cut(s)	35, 51, 62, 154
LweI	GCATC	2 cut(s)	43, 130
MalI	GATC	2 cut(s)	14, 197
MboI	GATC	2 cut(s)	12, 195
MflI	RGATCY	2 cut(s)	12, 195
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	2 cut(s)	103, 209
MlyI	GAGTC	2 cut(s)	108, 168
MnlI	CCTC	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
NdeII	GATC	2 cut(s)	12, 195
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	190
PagI	TCATGA	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	29
PflFI	GACNNNGTC	2 cut(s)	122, 158
PleI	GAGTC	2 cut(s)	107, 167
PpsI	GAGTC	2 cut(s)	107, 167
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	12, 195
PsyI	GACNNNGTC	2 cut(s)	122, 158
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	12, 195
SchI	GAGTC	2 cut(s)	108, 168
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	1 cut(s)	168
SfaNI	GCATC	2 cut(s)	43, 130
Sse9I	AATT	2 cut(s)	103, 209
SseBI	AGGCCT	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	97, 126, 162
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	103, 209
TatI	WGTACW	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	22, 221
Tth111I	GACNNNGTC	2 cut(s)	122, 158
XapI	RAATTY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.