RLG00000005097

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004760
Physical Location & Seq
Reverse (-)
65016879 .. 65018336
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005097

Sequence Viewer

Length: 558 bp
ATGGGCATCAACTCACCCAATCCCACCACCGACCCGAACCCTGCCTCCTCTGCCTCTCTCTCCCTCAACATTCGCCTGCCCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGTCGAGTCCAGGTTCACTGTCATTCACATCGGCATCCCTTTAGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGGAGGCCCACAGCGTCAGGCAGGTCGTCACCACCATCGTCGTCGATCACACCAATCTCATTCAGGCCGACGCCGCCTATTTAATCCACGACGCCTCCCTCAACGACCGGGTCGAACTTCGGGTCTTGGGTGACGTCGGCGTCAAGATCCGCGTCTTGAACATCGATTCCCCTGGCGTTCAGGTCGGAACCTTACGAAGAATACAGACGTCGCCTTTCCCTGATGATGACATGGCAGCTCTTAACGAAGGGTTTGTATGCTTAGCCGTGGGTTGTCAATCGCCGAACCGGACCGGCAACCACGCGGTGGAGACGAGAGCAACCGTCTCCTGCGTCACGGGGAGCGGATCGGGGCGCGCGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

186

Amino Acids

19.54

Weight (kDa)

6.5

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 29 - 113 3.8e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AatII GACGTC 2 cut(s) 327, 401
Acc36I ACCTGC 1 cut(s) 202
AccB7I CCANNNNNTGG 1 cut(s) 496
AccBSI CCGCTC 1 cut(s) 534
AccII CGCG 4 cut(s) 342, 494, 546, 548
AciI CCGC 6 cut(s) 87, 264, 340, 494, 534, 548
AclWI GGATC 2 cut(s) 331, 544
AcyI GRCGYC 5 cut(s) 261, 282, 324, 330, 398
AdeI CACNNNGTG 1 cut(s) 496
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 103, 496
AgsI TTSAA 1 cut(s) 349
AjnI CCWGG 3 cut(s) 128, 189, 361
AloI GAACNNNNNNTCC 4 cut(s) 29, 61, 341, 373
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 494, 520
AlwI GGATC 2 cut(s) 331, 544
AoxI GGCC 3 cut(s) 168, 195, 255
ApeKI GCWGC 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AspLEI GCGC 2 cut(s) 546, 548
AspS9I GGNCC 2 cut(s) 196, 480
AsuC2I CCSGG 2 cut(s) 180, 299
AsuHPI GGTGA 3 cut(s) 6, 211, 332
AvaII GGWCC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 440
BciT130I CCWGG 3 cut(s) 130, 191, 363
BcnI CCSGG 2 cut(s) 180, 299
BcoDI GTCTC 2 cut(s) 494, 520
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 3 cut(s) 264, 426, 549
BlpI GCTNAGC 1 cut(s) 451
BlsI GCNGC 3 cut(s) 265, 427, 550
Bme1390I CCNGG 5 cut(s) 130, 180, 191, 299, 363
Bme18I GGWCC 1 cut(s) 480
BmgT120I GGNCC 2 cut(s) 196, 480
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 5 cut(s) 130, 180, 191, 299, 363
BmsI GCATC 2 cut(s) 15, 162
Bpu1102I GCTNAGC 1 cut(s) 451
BpuMI CCSGG 2 cut(s) 180, 299
Bsa29I ATCGAT 1 cut(s) 354
BsaHI GRCGYC 5 cut(s) 261, 282, 324, 330, 398
BsaJI CCNNGG 3 cut(s) 178, 361, 456
BsaWI WCCGGW 1 cut(s) 477
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 496
Bse118I RCCGGY 1 cut(s) 482
BseBI CCWGG 3 cut(s) 130, 191, 363
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 3 cut(s) 178, 361, 456
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 103, 496
BsePI GCGCGC 1 cut(s) 544
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 437
Bsh1236I CGCG 4 cut(s) 342, 494, 546, 548
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 3 cut(s) 170, 197, 257
BshVI ATCGAT 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 298
BsiSI CCGG 4 cut(s) 180, 298, 478, 483
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 103, 496
BsmAI GTCTC 2 cut(s) 494, 520
BsmBI CGTCTC 2 cut(s) 494, 520
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 3 cut(s) 170, 197, 257
Bsp143I GATC 3 cut(s) 235, 336, 536
Bsp1720I GCTNAGC 1 cut(s) 451
BspACI CCGC 6 cut(s) 87, 264, 340, 494, 534, 548
BspANI GGCC 3 cut(s) 170, 197, 257
BspDI ATCGAT 1 cut(s) 354
BspFNI CGCG 4 cut(s) 342, 494, 546, 548
BspLI GGNNCC 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 2 cut(s) 331, 544
BsrBI CCGCTC 1 cut(s) 534
BsrFI RCCGGY 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 3 cut(s) 178, 361, 456
BssHII GCGCGC 1 cut(s) 544
BssMI GATC 3 cut(s) 235, 336, 536
BssNI GRCGYC 5 cut(s) 261, 282, 324, 330, 398
Bst2UI CCWGG 3 cut(s) 130, 191, 363
Bst4CI ACNGT 2 cut(s) 139, 514
BstACI GRCGYC 5 cut(s) 261, 282, 324, 330, 398
BstC8I GCNNGC 2 cut(s) 77, 546
BstDEI CTNAG 1 cut(s) 451
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 4 cut(s) 342, 494, 546, 548
BstHHI GCGC 2 cut(s) 546, 548
BstKTI GATC 3 cut(s) 238, 339, 539
BstMAI GTCTC 2 cut(s) 494, 520
BstMBI GATC 3 cut(s) 235, 336, 536
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 50, 263
BstNI CCWGG 3 cut(s) 130, 191, 363
BstSCI CCNGG 5 cut(s) 128, 178, 189, 297, 361
BstUI CGCG 4 cut(s) 342, 494, 546, 548
BstV1I GCAGC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 3 cut(s) 170, 197, 257
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 77, 546
CfoI GCGC 2 cut(s) 546, 548
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 196, 480
ClaI ATCGAT 1 cut(s) 354
CpoI CGGWCCG 1 cut(s) 480
CseI GACGC 6 cut(s) 193, 269, 290, 319, 331, 511
Csp6I GTAC 1 cut(s) 118
CspI CGGWCCG 1 cut(s) 480
CviAII CATG 1 cut(s) 421
CviJI RGCY 7 cut(s) 170, 183, 197, 257, 428, 455, 551
CviKI_1 RGCY 7 cut(s) 170, 183, 197, 257, 428, 455, 551
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 451
DpnI GATC 3 cut(s) 237, 338, 538
DpnII GATC 3 cut(s) 235, 336, 536
DraIII CACNNNGTG 1 cut(s) 496
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EciI GGCGGA 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 480
EcoRII CCWGG 3 cut(s) 128, 189, 361
Esp3I CGTCTC 2 cut(s) 494, 520
FaeI CATG 1 cut(s) 424
FaiI YATR 2 cut(s) 422, 448
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 420
Fnu4HI GCNGC 3 cut(s) 264, 426, 549
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 264, 426, 549
GlaI GCGC 2 cut(s) 545, 547
GluI GCNGC 3 cut(s) 264, 426, 549
HaeIII GGCC 3 cut(s) 170, 197, 257
HapII CCGG 4 cut(s) 180, 298, 478, 483
HgaI GACGC 6 cut(s) 193, 269, 290, 319, 331, 511
HhaI GCGC 2 cut(s) 546, 548
Hin1I GRCGYC 5 cut(s) 261, 282, 324, 330, 398
Hin1II CATG 1 cut(s) 424
Hin6I GCGC 2 cut(s) 544, 546
HinP1I GCGC 2 cut(s) 544, 546
HinfI GANTC 3 cut(s) 111, 125, 356
HpaII CCGG 4 cut(s) 180, 298, 478, 483
HphI GGTGA 3 cut(s) 6, 211, 332
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 110, 377
Hpy188III TCNNGA 3 cut(s) 334, 346, 555
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 7 cut(s) 125, 233, 236, 263, 284, 329, 403
HpyAV CCTTC 2 cut(s) 91, 431
HpyCH4III ACNGT 2 cut(s) 139, 514
HpyCH4IV ACGT 3 cut(s) 120, 324, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 263
HpyF3I CTNAG 1 cut(s) 451
HpySE526I ACGT 3 cut(s) 120, 324, 398
Hsp92I GRCGYC 5 cut(s) 261, 282, 324, 330, 398
Hsp92II CATG 1 cut(s) 424
HspAI GCGC 2 cut(s) 544, 546
Kzo9I GATC 3 cut(s) 235, 336, 536
LmnI GCTCC 1 cut(s) 531
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 2 cut(s) 15, 162
MaeII ACGT 3 cut(s) 120, 324, 398
MaeIII GTNAC 3 cut(s) 217, 320, 523
MalI GATC 3 cut(s) 237, 338, 538
MbiI CCGCTC 1 cut(s) 534
MboI GATC 3 cut(s) 235, 336, 536
MboII GAAGA 2 cut(s) 178, 399
MflI RGATCY 1 cut(s) 336
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 88, 355
MnlI CCTC 8 cut(s) 55, 58, 64, 74, 181, 187, 295, 299
MseI TTAA 2 cut(s) 272, 432
MspI CCGG 4 cut(s) 180, 298, 478, 483
MspR9I CCNGG 5 cut(s) 130, 180, 191, 299, 363
MvaI CCWGG 3 cut(s) 130, 191, 363
MvnI CGCG 4 cut(s) 342, 494, 546, 548
MwoI GCNNNNNNNGC 2 cut(s) 50, 263
NciI CCSGG 2 cut(s) 180, 299
NdeII GATC 3 cut(s) 235, 336, 536
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 1 cut(s) 379
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 3 cut(s) 217, 320, 523
PauI GCGCGC 1 cut(s) 544
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PfeI GAWTC 2 cut(s) 111, 356
PflFI GACNNNGTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 496
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 3 cut(s) 265, 427, 550
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 3 cut(s) 128, 189, 361
PspGI CCWGG 3 cut(s) 128, 189, 361
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 196, 480
PsuI RGATCY 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 299
PteI GCGCGC 1 cut(s) 544
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
Rsr2I CGGWCCG 1 cut(s) 480
RsrII CGGWCCG 1 cut(s) 480
SaqAI TTAA 2 cut(s) 272, 432
SatI GCNGC 3 cut(s) 264, 426, 549
Sau3AI GATC 3 cut(s) 235, 336, 536
Sau96I GGNCC 2 cut(s) 196, 480
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 5 cut(s) 130, 180, 191, 299, 363
SetI ASST 9 cut(s) 108, 123, 134, 216, 327, 375, 383, 401, 430
SfaNI GCATC 2 cut(s) 15, 162
SinI GGWCC 1 cut(s) 480
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 6 cut(s) 87, 264, 340, 494, 534, 548
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 5 cut(s) 128, 178, 189, 297, 361
TaaI ACNGT 2 cut(s) 139, 514
TaiI ACGT 3 cut(s) 123, 327, 401
TaqI TCGA 4 cut(s) 123, 234, 303, 354
TauI GCSGC 2 cut(s) 266, 551
TfiI GAWTC 2 cut(s) 111, 356
Tru1I TTAA 2 cut(s) 272, 432
Tru9I TTAA 2 cut(s) 272, 432
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 3 cut(s) 217, 320, 523
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 3 cut(s) 217, 320, 523
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 142
Tth111I GACNNNGTC 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 480
ZraI GACGTC 2 cut(s) 325, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.