RLG00000001988

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004760
Physical Location & Seq
Forward (+)
23986834 .. 23987535
702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001988

Sequence Viewer

Length: 702 bp
ATGGCATCATCATCAAGAGCCACCGCCAACTCCCACGCCAACGGGCCCACCGCAAACGGCGACCACCACAGGCCGTCAAACAGCAGCAGCGGCGGCAGCCGGCACCAGCACTACTACCCCCCAATGACGCCGTATCGGTCCTCGTCGTCGTCGGCTTCGTTCAAAGGCTGCTGCTGCTGCCTCTTCCTGCTCTTCTCCTTCCTGGCGCTCCTGGTCCTGGCCGTCGTCCTCGTCATAATCCTGGCCGTGAAACCCAAGAAGCCGCAGTTCGATCTCCAACAAGTAGGAGTCCAGTACATGGGCATCAACTCACCCAATAATCCCACCACCGACCCGGACCCGAACCCGAACCCGGCCTCCTCCGCCTCTCTCTCCCTCAGCATTCGCCTGCTCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGGCGAGTCCAGGTTCACCGTCATGTACCGCGGCATCCCCTTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGCAGGTCGTCGCCACCATCGCCGTCGATCGCGCCAATCTCATTCAGGCCGACGCCGCCGATTTAATCCGCGACGCCTCCCTCAACGACCGGGTCGAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGATTCCCCTGGCGTTCAGGTCAGTCATCGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

234

Amino Acids

25.01

Weight (kDa)

9.57

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 132 - 217 2.3e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 514
AccB1I GGYRCC 2 cut(s) 102, 641
AccB7I CCANNNNNTGG 1 cut(s) 298
AccII CGCG 4 cut(s) 462, 552, 591, 654
AclWI GGATC 1 cut(s) 643
AcoI YGGCCR 2 cut(s) 219, 243
AcyI GRCGYC 5 cut(s) 128, 573, 594, 636, 642
AfaI GTAC 3 cut(s) 296, 431, 458
AfiI CCNNNNNNNGG 5 cut(s) 217, 298, 352, 415, 628
AgsI TTSAA 2 cut(s) 163, 661
AjnI CCWGG 6 cut(s) 201, 210, 216, 240, 440, 673
AloI GAACNNNNNNTCC 4 cut(s) 341, 373, 653, 685
AluBI AGCT 1 cut(s) 619
AluI AGCT 1 cut(s) 619
Alw21I GWGCWC 1 cut(s) 621
AlwI GGATC 1 cut(s) 643
AoxI GGCC 8 cut(s) 44, 71, 219, 243, 354, 480, 507, 567
ApaI GGGCCC 1 cut(s) 48
ApeKI GCWGC 7 cut(s) 84, 87, 96, 168, 171, 174, 177
AspLEI GCGC 3 cut(s) 208, 554, 644
AspS9I GGNCC 6 cut(s) 44, 45, 138, 214, 337, 508
AsuC2I CCSGG 5 cut(s) 335, 353, 492, 611, 623
AsuHPI GGTGA 3 cut(s) 303, 439, 644
AvaII GGWCC 3 cut(s) 138, 214, 337
BaeGI GKGCMC 1 cut(s) 48
BanI GGYRCC 2 cut(s) 102, 641
BanII GRGCYC 2 cut(s) 48, 621
Bbv12I GWGCWC 1 cut(s) 621
BbvCI CCTCAGC 1 cut(s) 377
BbvI GCAGC 7 cut(s) 96, 99, 108, 155, 158, 161, 164
BccI CCATC 1 cut(s) 545
BceAI ACGGC 7 cut(s) 58, 73, 115, 206, 230, 448, 527
BciT130I CCWGG 6 cut(s) 203, 212, 218, 242, 442, 675
BcnI CCSGG 5 cut(s) 335, 353, 492, 611, 623
BfoI RGCGCY 2 cut(s) 209, 645
BfuAI ACCTGC 1 cut(s) 514
Bme18I GGWCC 3 cut(s) 138, 214, 337
BmgT120I GGNCC 6 cut(s) 44, 45, 138, 214, 337, 508
BmiI GGNNCC 4 cut(s) 46, 104, 339, 643
BmsI GCATC 3 cut(s) 14, 312, 474
Bpu10I CCTNAGC 1 cut(s) 377
BpuMI CCSGG 5 cut(s) 335, 353, 492, 611, 623
Bsa29I ATCGAT 1 cut(s) 666
BsaHI GRCGYC 5 cut(s) 128, 573, 594, 636, 642
BsaJI CCNNGG 4 cut(s) 460, 471, 490, 673
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 298, 352, 415, 628
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 6 cut(s) 203, 212, 218, 242, 442, 675
BseCI ATCGAT 1 cut(s) 666
BseDI CCNNGG 4 cut(s) 460, 471, 490, 673
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 5 cut(s) 217, 298, 352, 415, 628
BseMII CTCAG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 48
BseXI GCAGC 7 cut(s) 96, 99, 108, 155, 158, 161, 164
Bsh1236I CGCG 4 cut(s) 462, 552, 591, 654
Bsh1285I CGRYCG 2 cut(s) 550, 610
BshFI GGCC 8 cut(s) 46, 73, 221, 245, 356, 482, 509, 569
BshNI GGYRCC 2 cut(s) 102, 641
BshVI ATCGAT 1 cut(s) 666
BsiEI CGRYCG 2 cut(s) 550, 610
BsiHKAI GWGCWC 1 cut(s) 621
BsiSI CCGG 6 cut(s) 100, 335, 353, 492, 610, 622
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 5 cut(s) 217, 298, 352, 415, 628
BsmFI GGGAC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 8 cut(s) 46, 73, 221, 245, 356, 482, 509, 569
Bsp120I GGGCCC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 48, 621
Bsp143I GATC 3 cut(s) 271, 547, 648
BspANI GGCC 8 cut(s) 46, 73, 221, 245, 356, 482, 509, 569
BspCNI CTCAG 1 cut(s) 390
BspDI ATCGAT 1 cut(s) 666
BspFNI CGCG 4 cut(s) 462, 552, 591, 654
BspLI GGNNCC 4 cut(s) 46, 104, 339, 643
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 1 cut(s) 643
BspQI GCTCTTC 2 cut(s) 197, 398
BspT107I GGYRCC 2 cut(s) 102, 641
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 4 cut(s) 460, 471, 490, 673
BssMI GATC 3 cut(s) 271, 547, 648
BssNI GRCGYC 5 cut(s) 128, 573, 594, 636, 642
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 6 cut(s) 203, 212, 218, 242, 442, 675
Bst4CI ACNGT 1 cut(s) 451
Bst6I CTCTTC 3 cut(s) 188, 197, 398
BstACI GRCGYC 5 cut(s) 128, 573, 594, 636, 642
BstC8I GCNNGC 3 cut(s) 101, 389, 507
BstDEI CTNAG 1 cut(s) 377
BstDSI CCRYGG 1 cut(s) 460
BstF5I GGATG 1 cut(s) 465
BstFNI CGCG 4 cut(s) 462, 552, 591, 654
BstH2I RGCGCY 2 cut(s) 209, 645
BstHHI GCGC 3 cut(s) 208, 554, 644
BstKTI GATC 3 cut(s) 274, 550, 651
BstMBI GATC 3 cut(s) 271, 547, 648
BstMCI CGRYCG 2 cut(s) 550, 610
BstMWI GCNNNNNNNGC 8 cut(s) 90, 93, 96, 174, 177, 362, 539, 575
BstNI CCWGG 6 cut(s) 203, 212, 218, 242, 442, 675
BstSLI GKGCMC 1 cut(s) 48
BstUI CGCG 4 cut(s) 462, 552, 591, 654
BstV1I GCAGC 7 cut(s) 96, 99, 108, 155, 158, 161, 164
BstX2I RGATCY 1 cut(s) 648
BstYI RGATCY 1 cut(s) 648
Bsu15I ATCGAT 1 cut(s) 666
BsuRI GGCC 8 cut(s) 46, 73, 221, 245, 356, 482, 509, 569
BsuTUI ATCGAT 1 cut(s) 666
BtgI CCRYGG 1 cut(s) 460
BtgZI GCGATG 2 cut(s) 523, 677
BtsCI GGATG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 3 cut(s) 101, 389, 507
CfoI GCGC 3 cut(s) 208, 554, 644
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 6 cut(s) 44, 45, 138, 214, 337, 508
Cfr42I CCGCGG 1 cut(s) 463
ClaI ATCGAT 1 cut(s) 666
CseI GACGC 5 cut(s) 136, 505, 581, 602, 643
Csp6I GTAC 3 cut(s) 295, 430, 457
CviAII CATG 2 cut(s) 298, 454
CviQI GTAC 3 cut(s) 295, 430, 457
DdeI CTNAG 1 cut(s) 377
DinI GGCGCC 1 cut(s) 643
DpnI GATC 3 cut(s) 273, 549, 650
DpnII GATC 3 cut(s) 271, 547, 648
EaeI YGGCCR 2 cut(s) 219, 243
Eam1104I CTCTTC 3 cut(s) 188, 197, 398
EarI CTCTTC 3 cut(s) 188, 197, 398
EciI GGCGGA 2 cut(s) 352, 388
Ecl136II GAGCTC 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 482
Eco24I GRGCYC 2 cut(s) 48, 621
Eco47I GGWCC 3 cut(s) 138, 214, 337
Eco53kI GAGCTC 1 cut(s) 619
EcoICRI GAGCTC 1 cut(s) 619
EcoRII CCWGG 6 cut(s) 201, 210, 216, 240, 440, 673
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 2 cut(s) 48, 621
EgeI GGCGCC 1 cut(s) 643
EheI GGCGCC 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 2 cut(s) 301, 457
FaiI YATR 3 cut(s) 236, 299, 455
FaqI GGGAC 1 cut(s) 473
FatI CATG 2 cut(s) 297, 453
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 2 cut(s) 48, 621
GlaI GCGC 3 cut(s) 207, 553, 643
HaeII RGCGCY 2 cut(s) 209, 645
HaeIII GGCC 8 cut(s) 46, 73, 221, 245, 356, 482, 509, 569
HapII CCGG 6 cut(s) 100, 335, 353, 492, 610, 622
HgaI GACGC 5 cut(s) 136, 505, 581, 602, 643
HhaI GCGC 3 cut(s) 208, 554, 644
Hin1I GRCGYC 5 cut(s) 128, 573, 594, 636, 642
Hin1II CATG 2 cut(s) 301, 457
Hin6I GCGC 3 cut(s) 206, 552, 642
HinP1I GCGC 3 cut(s) 206, 552, 642
HinfI GANTC 4 cut(s) 288, 423, 437, 668
HpaII CCGG 6 cut(s) 100, 335, 353, 492, 610, 622
HphI GGTGA 3 cut(s) 303, 439, 644
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 1 cut(s) 422
Hpy188III TCNNGA 2 cut(s) 15, 658
Hpy8I GTNNAC 1 cut(s) 447
Hpy99I CGWCG 9 cut(s) 148, 151, 154, 227, 533, 548, 575, 596, 641
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 1 cut(s) 636
HpyF10VI GCNNNNNNNGC 8 cut(s) 90, 93, 96, 174, 177, 362, 539, 575
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 1 cut(s) 636
Hsp92I GRCGYC 5 cut(s) 128, 573, 594, 636, 642
Hsp92II CATG 2 cut(s) 301, 457
HspAI GCGC 3 cut(s) 206, 552, 642
KasI GGCGCC 1 cut(s) 641
KroI GCCGGC 1 cut(s) 99
KroNI GCCGGC 1 cut(s) 101
KspI CCGCGG 1 cut(s) 463
Kzo9I GATC 3 cut(s) 271, 547, 648
LguI GCTCTTC 2 cut(s) 197, 398
LmnI GCTCC 2 cut(s) 213, 624
Lsp1109I GCAGC 7 cut(s) 96, 99, 108, 155, 158, 161, 164
LweI GCATC 3 cut(s) 14, 312, 474
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 632
MalI GATC 3 cut(s) 273, 549, 650
MboI GATC 3 cut(s) 271, 547, 648
MboII GAAGA 4 cut(s) 175, 184, 385, 490
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 2 cut(s) 48, 621
Mly113I GGCGCC 1 cut(s) 642
MlyI GAGTC 2 cut(s) 297, 446
MmeI TCCRAC 2 cut(s) 301, 400
MroNI GCCGGC 1 cut(s) 99
MseI TTAA 2 cut(s) 584, 700
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 2 cut(s) 90, 462
MspI CCGG 6 cut(s) 100, 335, 353, 492, 610, 622
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 6 cut(s) 203, 212, 218, 242, 442, 675
MvnI CGCG 4 cut(s) 462, 552, 591, 654
MwoI GCNNNNNNNGC 8 cut(s) 90, 93, 96, 174, 177, 362, 539, 575
NaeI GCCGGC 1 cut(s) 101
NarI GGCGCC 1 cut(s) 642
NciI CCSGG 5 cut(s) 335, 353, 492, 611, 623
NdeII GATC 3 cut(s) 271, 547, 648
NgoMIV GCCGGC 1 cut(s) 99
NlaIII CATG 2 cut(s) 301, 457
NlaIV GGNNCC 4 cut(s) 46, 104, 339, 643
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 632
PceI AGGCCT 1 cut(s) 482
PciSI GCTCTTC 2 cut(s) 197, 398
PcsI WCGNNNNNNNCGW 2 cut(s) 155, 612
PctI GAATGC 1 cut(s) 381
PdiI GCCGGC 1 cut(s) 101
PfeI GAWTC 2 cut(s) 423, 668
PflFI GACNNNGTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 298
Ple19I CGATCG 1 cut(s) 550
PleI GAGTC 2 cut(s) 296, 445
PluTI GGCGCC 1 cut(s) 645
PpsI GAGTC 2 cut(s) 296, 445
Psp124BI GAGCTC 1 cut(s) 621
Psp6I CCWGG 6 cut(s) 201, 210, 216, 240, 440, 673
PspGI CCWGG 6 cut(s) 201, 210, 216, 240, 440, 673
PspN4I GGNNCC 4 cut(s) 46, 104, 339, 643
PspOMI GGGCCC 1 cut(s) 44
PspPI GGNCC 6 cut(s) 44, 45, 138, 214, 337, 508
PsuI RGATCY 1 cut(s) 648
PsyI GACNNNGTC 1 cut(s) 611
PvuI CGATCG 1 cut(s) 550
RsaI GTAC 3 cut(s) 296, 431, 458
RsaNI GTAC 3 cut(s) 295, 430, 457
RseI CAYNNNNRTG 1 cut(s) 452
SacI GAGCTC 1 cut(s) 621
SacII CCGCGG 1 cut(s) 463
SapI GCTCTTC 2 cut(s) 197, 398
SaqAI TTAA 2 cut(s) 584, 700
Sau3AI GATC 3 cut(s) 271, 547, 648
Sau96I GGNCC 6 cut(s) 44, 45, 138, 214, 337, 508
SchI GAGTC 2 cut(s) 297, 446
SduI GDGCHC 2 cut(s) 48, 621
SetI ASST 6 cut(s) 420, 446, 528, 621, 639, 687
SfaNI GCATC 3 cut(s) 14, 312, 474
SfoI GGCGCC 1 cut(s) 643
Sfr303I CCGCGG 1 cut(s) 463
SgrBI CCGCGG 1 cut(s) 463
SinI GGWCC 3 cut(s) 138, 214, 337
SmiMI CAYNNNNRTG 1 cut(s) 452
SseBI AGGCCT 1 cut(s) 482
SspDI GGCGCC 1 cut(s) 641
SstI GAGCTC 1 cut(s) 621
StuI AGGCCT 1 cut(s) 482
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 1 cut(s) 639
TaqI TCGA 4 cut(s) 270, 546, 615, 666
TaqII GACCGA 1 cut(s) 126
TatI WGTACW 1 cut(s) 294
TauI GCSGC 5 cut(s) 93, 96, 265, 465, 578
TfiI GAWTC 2 cut(s) 423, 668
Tru1I TTAA 2 cut(s) 584, 700
Tru9I TTAA 2 cut(s) 584, 700
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 7 cut(s) 84, 87, 96, 168, 171, 174, 177
Tsp45I GTSAC 1 cut(s) 632
TspGWI ACGGA 1 cut(s) 475
Tth111I GACNNNGTC 1 cut(s) 611
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 3 cut(s) 138, 214, 337
ZraI GACGTC 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.