Rh7AG359700

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004760
Physical Location & Seq
Reverse (-)
46172708 .. 46176385
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG359700.1

Sequence Viewer

Length: 834 bp
ATGGCATCATCATCAAGAGCCACCGCCAACTCCCACAGACCCGCCACCGCCCACGCCAACGGGCCCACCGCAAACGGCGACCACCACAGGCCCACAGCAAACGGCGACCAGAGGCCCACCGCAAACGGCGACCACCAGAGGCCGTCAAACCACAGCCACAGCAGGGGCAGCGGCAACGGGCACCAGCACTACTACCCCCCAACGACGCCGTATCGGTCGTCGTCCTCGTCGGCTTCGTTCAGAGGCTGCTGCTGCTGCCTCTTCCTGCTCTTCTCCCTCCTGGCGCTCCTGGTCCTGGCCGTCGTGCTCGTGATAATCCTGGCCGTGAAACCCAAGAAGCCGCAGTTCGATCTCCAACAAGTAGGAGTCCAGTACATGGGCATCAACTCGCCCAATCCCACCACCGACCCGAACCCGGCCTCCTCCGCCTCTCTCTCCCTCAGCATTCGCCTGCTCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGCATCCCTTTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGCAGGTCGTCGCCACCATCGCCGTCGATCGCGCCAATCTCATTCAGGCCGACGCCGCCGATTTAATCCGCGACGCCTCCCTCAACGACCGGGTCGAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGATTCCCCTGGCGTTCAGGTTTCTGTGGATTGTGCAATCGTTATAAGTCCAAGGAAGCAGTCTCTTACTTACAAGCAGTGTGGATTTGATGGATTGAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

277

Amino Acids

29.62

Weight (kDa)

9.56

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 153 - 251 1.9e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 773
AatII GACGTC 1 cut(s) 702
Acc36I ACCTGC 1 cut(s) 577
AccB1I GGYRCC 2 cut(s) 180, 704
AccB7I CCANNNNNTGG 1 cut(s) 376
AccII CGCG 4 cut(s) 525, 615, 654, 717
AclWI GGATC 1 cut(s) 706
AcoI YGGCCR 2 cut(s) 297, 321
AcyI GRCGYC 5 cut(s) 206, 636, 657, 699, 705
AfaI GTAC 3 cut(s) 374, 494, 521
AfiI CCNNNNNNNGG 6 cut(s) 163, 295, 376, 415, 478, 691
AgsI TTSAA 1 cut(s) 724
AjnI CCWGG 6 cut(s) 279, 288, 294, 318, 503, 736
AloI GAACNNNNNNTCC 4 cut(s) 404, 436, 716, 748
AluBI AGCT 1 cut(s) 682
AluI AGCT 1 cut(s) 682
Alw21I GWGCWC 2 cut(s) 309, 684
Alw26I GTCTC 1 cut(s) 795
AlwI GGATC 1 cut(s) 706
AlwNI CAGNNNCTG 1 cut(s) 246
ApaI GGGCCC 1 cut(s) 66
ApeKI GCWGC 5 cut(s) 168, 246, 249, 252, 255
AspLEI GCGC 3 cut(s) 286, 617, 707
AspS9I GGNCC 6 cut(s) 62, 63, 90, 114, 292, 571
AsuC2I CCSGG 4 cut(s) 416, 555, 674, 686
AsuHPI GGTGA 1 cut(s) 707
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 2 cut(s) 66, 183
BanI GGYRCC 2 cut(s) 180, 704
BanII GRGCYC 2 cut(s) 66, 684
BauI CACGAG 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 309, 684
BbvCI CCTCAGC 1 cut(s) 440
BbvI GCAGC 5 cut(s) 180, 233, 236, 239, 242
BccI CCATC 2 cut(s) 608, 812
BceAI ACGGC 9 cut(s) 91, 118, 127, 142, 193, 284, 308, 511, 590
BciT130I CCWGG 6 cut(s) 281, 290, 296, 320, 505, 738
BcnI CCSGG 4 cut(s) 416, 555, 674, 686
BcoDI GTCTC 1 cut(s) 795
BfoI RGCGCY 2 cut(s) 287, 708
BfuAI ACCTGC 1 cut(s) 577
BisI GCNGC 9 cut(s) 169, 172, 247, 250, 253, 256, 341, 526, 639
BlsI GCNGC 9 cut(s) 170, 173, 248, 251, 254, 257, 342, 527, 640
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 6 cut(s) 62, 63, 90, 114, 292, 571
BmiI GGNNCC 3 cut(s) 64, 182, 706
BmsI GCATC 3 cut(s) 14, 390, 537
Bpu10I CCTNAGC 1 cut(s) 440
BpuMI CCSGG 4 cut(s) 416, 555, 674, 686
Bsa29I ATCGAT 1 cut(s) 729
BsaHI GRCGYC 5 cut(s) 206, 636, 657, 699, 705
BsaJI CCNNGG 4 cut(s) 523, 553, 736, 779
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 295, 376, 415, 478, 691
Bse1I ACTGG 1 cut(s) 370
BseBI CCWGG 6 cut(s) 281, 290, 296, 320, 505, 738
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 4 cut(s) 523, 553, 736, 779
BseGI GGATG 1 cut(s) 528
BseLI CCNNNNNNNGG 6 cut(s) 163, 295, 376, 415, 478, 691
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 412
BseSI GKGCMC 2 cut(s) 66, 183
BseXI GCAGC 5 cut(s) 180, 233, 236, 239, 242
Bsh1236I CGCG 4 cut(s) 525, 615, 654, 717
Bsh1285I CGRYCG 3 cut(s) 218, 613, 673
BshNI GGYRCC 2 cut(s) 180, 704
BshVI ATCGAT 1 cut(s) 729
BsiEI CGRYCG 3 cut(s) 218, 613, 673
BsiHKAI GWGCWC 2 cut(s) 309, 684
BsiSI CCGG 4 cut(s) 416, 555, 673, 685
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 6 cut(s) 163, 295, 376, 415, 478, 691
BsmAI GTCTC 1 cut(s) 795
BsmFI GGGAC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 444
Bsp120I GGGCCC 1 cut(s) 62
Bsp1286I GDGCHC 4 cut(s) 66, 183, 309, 684
Bsp143I GATC 3 cut(s) 349, 610, 711
BspCNI CTCAG 1 cut(s) 453
BspDI ATCGAT 1 cut(s) 729
BspFNI CGCG 4 cut(s) 525, 615, 654, 717
BspLI GGNNCC 3 cut(s) 64, 182, 706
BspMI ACCTGC 1 cut(s) 577
BspPI GGATC 1 cut(s) 706
BspQI GCTCTTC 2 cut(s) 275, 461
BspT107I GGYRCC 2 cut(s) 180, 704
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 4 cut(s) 523, 553, 736, 779
BssMI GATC 3 cut(s) 349, 610, 711
BssNI GRCGYC 5 cut(s) 206, 636, 657, 699, 705
BssSI CACGAG 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 779
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 6 cut(s) 281, 290, 296, 320, 505, 738
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 3 cut(s) 266, 275, 461
BstACI GRCGYC 5 cut(s) 206, 636, 657, 699, 705
BstC8I GCNNGC 2 cut(s) 452, 570
BstDEI CTNAG 1 cut(s) 440
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 1 cut(s) 528
BstFNI CGCG 4 cut(s) 525, 615, 654, 717
BstH2I RGCGCY 2 cut(s) 287, 708
BstHHI GCGC 3 cut(s) 286, 617, 707
BstKTI GATC 3 cut(s) 352, 613, 714
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 3 cut(s) 349, 610, 711
BstMCI CGRYCG 3 cut(s) 218, 613, 673
BstMWI GCNNNNNNNGC 6 cut(s) 168, 252, 255, 425, 602, 638
BstNI CCWGG 6 cut(s) 281, 290, 296, 320, 505, 738
BstSLI GKGCMC 2 cut(s) 66, 183
BstUI CGCG 4 cut(s) 525, 615, 654, 717
BstV1I GCAGC 5 cut(s) 180, 233, 236, 239, 242
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
Bsu15I ATCGAT 1 cut(s) 729
BsuTUI ATCGAT 1 cut(s) 729
BtgI CCRYGG 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 586
BtsCI GGATG 1 cut(s) 528
BtsI GCAGTG 1 cut(s) 812
BtsIMutI CAGTG 2 cut(s) 510, 812
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 2 cut(s) 452, 570
CaiI CAGNNNCTG 1 cut(s) 246
CfoI GCGC 3 cut(s) 286, 617, 707
Cfr13I GGNCC 6 cut(s) 62, 63, 90, 114, 292, 571
Cfr42I CCGCGG 1 cut(s) 526
ClaI ATCGAT 1 cut(s) 729
CseI GACGC 5 cut(s) 214, 568, 644, 665, 706
Csp6I GTAC 3 cut(s) 373, 493, 520
CspCI CAANNNNNGTGG 2 cut(s) 790, 825
CviAII CATG 2 cut(s) 376, 517
CviQI GTAC 3 cut(s) 373, 493, 520
DdeI CTNAG 1 cut(s) 440
DinI GGCGCC 1 cut(s) 706
DpnI GATC 3 cut(s) 351, 612, 713
DpnII GATC 3 cut(s) 349, 610, 711
EaeI YGGCCR 2 cut(s) 297, 321
Eam1104I CTCTTC 3 cut(s) 266, 275, 461
EarI CTCTTC 3 cut(s) 266, 275, 461
EciI GGCGGA 2 cut(s) 415, 451
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 779
Eco147I AGGCCT 1 cut(s) 545
Eco24I GRGCYC 2 cut(s) 66, 684
Eco47I GGWCC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 682
EcoRII CCWGG 6 cut(s) 279, 288, 294, 318, 503, 736
EcoT14I CCWWGG 1 cut(s) 779
EcoT38I GRGCYC 2 cut(s) 66, 684
EgeI GGCGCC 1 cut(s) 706
EheI GGCGCC 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 779
FaeI CATG 2 cut(s) 379, 520
FaiI YATR 3 cut(s) 377, 518, 773
FaqI GGGAC 1 cut(s) 536
FatI CATG 2 cut(s) 375, 516
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 9 cut(s) 169, 172, 247, 250, 253, 256, 341, 526, 639
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 2 cut(s) 66, 684
Fsp4HI GCNGC 9 cut(s) 169, 172, 247, 250, 253, 256, 341, 526, 639
GlaI GCGC 3 cut(s) 285, 616, 706
GluI GCNGC 9 cut(s) 169, 172, 247, 250, 253, 256, 341, 526, 639
HaeII RGCGCY 2 cut(s) 287, 708
HapII CCGG 4 cut(s) 416, 555, 673, 685
HgaI GACGC 5 cut(s) 214, 568, 644, 665, 706
HhaI GCGC 3 cut(s) 286, 617, 707
Hin1I GRCGYC 5 cut(s) 206, 636, 657, 699, 705
Hin1II CATG 2 cut(s) 379, 520
Hin6I GCGC 3 cut(s) 284, 615, 705
HinP1I GCGC 3 cut(s) 284, 615, 705
HinfI GANTC 4 cut(s) 366, 486, 500, 731
HpaII CCGG 4 cut(s) 416, 555, 673, 685
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 2 cut(s) 242, 485
Hpy188III TCNNGA 3 cut(s) 15, 310, 721
Hpy8I GTNNAC 1 cut(s) 510
Hpy99I CGWCG 9 cut(s) 208, 223, 232, 305, 596, 611, 638, 659, 704
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 1 cut(s) 764
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 252, 255, 425, 602, 638
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 699
Hsp92I GRCGYC 5 cut(s) 206, 636, 657, 699, 705
Hsp92II CATG 2 cut(s) 379, 520
HspAI GCGC 3 cut(s) 284, 615, 705
KasI GGCGCC 1 cut(s) 704
KspI CCGCGG 1 cut(s) 526
Kzo9I GATC 3 cut(s) 349, 610, 711
LguI GCTCTTC 2 cut(s) 275, 461
LmnI GCTCC 2 cut(s) 291, 687
Lsp1109I GCAGC 5 cut(s) 180, 233, 236, 239, 242
LweI GCATC 3 cut(s) 14, 390, 537
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 1 cut(s) 695
MalI GATC 3 cut(s) 351, 612, 713
MboI GATC 3 cut(s) 349, 610, 711
MboII GAAGA 4 cut(s) 253, 262, 448, 553
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 4 cut(s) 66, 183, 309, 684
Mly113I GGCGCC 1 cut(s) 705
MlyI GAGTC 2 cut(s) 375, 509
MmeI TCCRAC 2 cut(s) 379, 463
MseI TTAA 1 cut(s) 647
MslI CAYNNNNRTG 1 cut(s) 515
MspA1I CMGCKG 2 cut(s) 171, 525
MspI CCGG 4 cut(s) 416, 555, 673, 685
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 6 cut(s) 281, 290, 296, 320, 505, 738
MvnI CGCG 4 cut(s) 525, 615, 654, 717
MwoI GCNNNNNNNGC 6 cut(s) 168, 252, 255, 425, 602, 638
NarI GGCGCC 1 cut(s) 705
NciI CCSGG 4 cut(s) 416, 555, 674, 686
NdeII GATC 3 cut(s) 349, 610, 711
NlaIII CATG 2 cut(s) 379, 520
NlaIV GGNNCC 3 cut(s) 64, 182, 706
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 695
PceI AGGCCT 1 cut(s) 545
PciSI GCTCTTC 2 cut(s) 275, 461
PcsI WCGNNNNNNNCGW 3 cut(s) 224, 233, 675
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 486, 731
PflFI GACNNNGTC 1 cut(s) 674
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 9 cut(s) 170, 173, 248, 251, 254, 257, 342, 527, 640
Ple19I CGATCG 1 cut(s) 613
PleI GAGTC 2 cut(s) 374, 508
PluTI GGCGCC 1 cut(s) 708
PpsI GAGTC 2 cut(s) 374, 508
PsiI TTATAA 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 6 cut(s) 279, 288, 294, 318, 503, 736
PspGI CCWGG 6 cut(s) 279, 288, 294, 318, 503, 736
PspN4I GGNNCC 3 cut(s) 64, 182, 706
PspOMI GGGCCC 1 cut(s) 62
PspPI GGNCC 6 cut(s) 62, 63, 90, 114, 292, 571
PstNI CAGNNNCTG 1 cut(s) 246
PsuI RGATCY 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 674
PvuI CGATCG 1 cut(s) 613
RsaI GTAC 3 cut(s) 374, 494, 521
RsaNI GTAC 3 cut(s) 373, 493, 520
RseI CAYNNNNRTG 1 cut(s) 515
SacI GAGCTC 1 cut(s) 684
SacII CCGCGG 1 cut(s) 526
SapI GCTCTTC 2 cut(s) 275, 461
SaqAI TTAA 1 cut(s) 647
SatI GCNGC 9 cut(s) 169, 172, 247, 250, 253, 256, 341, 526, 639
Sau3AI GATC 3 cut(s) 349, 610, 711
Sau96I GGNCC 6 cut(s) 62, 63, 90, 114, 292, 571
SchI GAGTC 2 cut(s) 375, 509
SduI GDGCHC 4 cut(s) 66, 183, 309, 684
SetI ASST 6 cut(s) 483, 509, 591, 684, 702, 750
SfaNI GCATC 3 cut(s) 14, 390, 537
SfoI GGCGCC 1 cut(s) 706
Sfr303I CCGCGG 1 cut(s) 526
SgrBI CCGCGG 1 cut(s) 526
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 515
SseBI AGGCCT 1 cut(s) 545
SspDI GGCGCC 1 cut(s) 704
SstI GAGCTC 1 cut(s) 684
StuI AGGCCT 1 cut(s) 545
StyI CCWWGG 1 cut(s) 779
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 1 cut(s) 702
TaqI TCGA 4 cut(s) 348, 609, 678, 729
TaqII GACCGA 1 cut(s) 204
TatI WGTACW 1 cut(s) 372
TauI GCSGC 4 cut(s) 174, 343, 528, 641
TfiI GAWTC 2 cut(s) 486, 731
Tru1I TTAA 1 cut(s) 647
Tru9I TTAA 1 cut(s) 647
TscAI CASTG 2 cut(s) 517, 812
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 5 cut(s) 168, 246, 249, 252, 255
Tsp45I GTSAC 1 cut(s) 695
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 2 cut(s) 517, 812
Tth111I GACNNNGTC 1 cut(s) 674
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 292
ZraI GACGTC 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.