pycom08g19840

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0004760
Physical Location & Seq
Forward (+)
19794986 .. 19798139
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19840.1

Sequence Viewer

Length: 792 bp
ATGACATCAAGAGACAACCCAACCCCAAACGGAAACGCAACCGTAAACGGAGACCACAGACCCCGCGTCCCACCGCCACGACCGCCGCCGTCGTCCTCCTCCTCCTCAAACCCCCGCAGCAGCAGCAACCACCACCACTACTACCCGACGAGGTCGTCATACTCCTCCTCCTCCTCCTCCGCTTCCTTCAAGGGCTGCTGCTGCTGCCTTTTCTTACTCTTCTCCTTCCTAGCCCTCCTCGTCCTCGCCGTCGTCCTCGTCATCGTCCTCGCCATCAAGCCGAAGAAGCCGCAGTTTGATCTCCAGCAAGTCGGCGTCCAGTACATGGGCATCAACTCGCCCAATCCCACCGCAACCGCCGACCCCAACCAAAACCCTACCTCCGCCTCACTCTCCCTCAACATTCGCATGCTCTTCTCCGCTGCTAACCCCAACAAGGTCGGGATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGGATCCCATTGGGCAAGGCCTCCATCCCCGGCTTCTACCAGGACGCCCACACTGTCCGCCAAGTCGTCGCCACCATCGCCGTCGATCGGGTCAATTTGCTCCAAGCCGACGCCGCCGATTTAGTCCGAGACGCTTCCCTCAACGACCGAGTCGAGCTCAGGGTCTTGGGTGACGTTGGCGCCAAGATCCGCGTCTTGAACTTCGATTCCCCTGGCGTTCAGGTGTCCGTGGATTGTGCAATTGTCATAAGTCCAAGGAAGCAGTCTCTCACATACAAGCAGTGTGGATTTGATGGATTGAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

264

Amino Acids

28.33

Weight (kDa)

9.51

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 139 - 240 1.7e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 662
AccB7I CCANNNNNTGG 1 cut(s) 325
AccII CGCG 3 cut(s) 66, 483, 675
AclWI GGATC 4 cut(s) 452, 481, 494, 664
AcyI GRCGYC 4 cut(s) 315, 528, 594, 663
AfaI GTAC 3 cut(s) 323, 452, 479
AfiI CCNNNNNNNGG 3 cut(s) 325, 436, 570
AgsI TTSAA 2 cut(s) 190, 682
AhdI GACNNNNNGTC 1 cut(s) 65
AjnI CCWGG 3 cut(s) 461, 522, 694
AloI GAACNNNNNNTCC 2 cut(s) 674, 706
AluBI AGCT 1 cut(s) 640
AluI AGCT 1 cut(s) 640
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 4 cut(s) 6, 45, 606, 753
AlwI GGATC 4 cut(s) 452, 481, 494, 664
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 8 cut(s) 117, 120, 123, 195, 198, 201, 204, 422
AspLEI GCGC 1 cut(s) 665
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 665
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 8 cut(s) 129, 132, 135, 182, 185, 188, 191, 409
BccI CCATC 4 cut(s) 281, 515, 566, 770
BceAI ACGGC 4 cut(s) 73, 233, 469, 548
BciT130I CCWGG 3 cut(s) 463, 524, 696
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 4 cut(s) 6, 45, 606, 753
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 666
Bme1390I CCNGG 4 cut(s) 463, 513, 524, 696
BmeRI GACNNNNNGTC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 488, 664
BmrFI CCNGG 4 cut(s) 463, 513, 524, 696
BmsI GCATC 1 cut(s) 339
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpmI CTGGAG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 513
BsaHI GRCGYC 4 cut(s) 315, 528, 594, 663
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 5 cut(s) 481, 511, 694, 711, 737
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 365, 395
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 436, 570
Bse1I ACTGG 1 cut(s) 319
BseBI CCWGG 3 cut(s) 463, 524, 696
BseDI CCNNGG 5 cut(s) 481, 511, 694, 711, 737
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 3 cut(s) 325, 436, 570
BseMII CTCAG 1 cut(s) 655
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 9 cut(s) 88, 91, 94, 154, 157, 160, 163, 166, 227
BseXI GCAGC 8 cut(s) 129, 132, 135, 182, 185, 188, 191, 409
Bsh1236I CGCG 3 cut(s) 66, 483, 675
Bsh1285I CGRYCG 3 cut(s) 83, 571, 631
BshFI GGCC 1 cut(s) 503
BshNI GGYRCC 1 cut(s) 662
BsiEI CGRYCG 3 cut(s) 83, 571, 631
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 325, 436, 570
BsmAI GTCTC 4 cut(s) 6, 45, 606, 753
BsmBI CGTCTC 1 cut(s) 606
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 1 cut(s) 503
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 5 cut(s) 298, 444, 486, 568, 669
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 1 cut(s) 654
BspFNI CGCG 3 cut(s) 66, 483, 675
BspLI GGNNCC 2 cut(s) 488, 664
BspPI GGATC 4 cut(s) 452, 481, 494, 664
BspQI GCTCTTC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 5 cut(s) 481, 511, 694, 711, 737
BssMI GATC 5 cut(s) 298, 444, 486, 568, 669
BssNI GRCGYC 4 cut(s) 315, 528, 594, 663
BssT1I CCWWGG 1 cut(s) 737
Bst2UI CCWGG 3 cut(s) 463, 524, 696
Bst4CI ACNGT 3 cut(s) 43, 472, 538
Bst6I CTCTTC 2 cut(s) 224, 419
BstACI GRCGYC 4 cut(s) 315, 528, 594, 663
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 1 cut(s) 641
BstDSI CCRYGG 2 cut(s) 481, 711
BstF5I GGATG 1 cut(s) 507
BstFNI CGCG 3 cut(s) 66, 483, 675
BstH2I RGCGCY 1 cut(s) 666
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 5 cut(s) 301, 447, 489, 571, 672
BstMAI GTCTC 4 cut(s) 6, 45, 606, 753
BstMBI GATC 5 cut(s) 298, 444, 486, 568, 669
BstMCI CGRYCG 3 cut(s) 83, 571, 631
BstMWI GCNNNNNNNGC 7 cut(s) 82, 123, 201, 204, 286, 560, 596
BstNI CCWGG 3 cut(s) 463, 524, 696
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 4 cut(s) 461, 511, 522, 694
BstUI CGCG 3 cut(s) 66, 483, 675
BstV1I GCAGC 8 cut(s) 129, 132, 135, 182, 185, 188, 191, 409
BstX2I RGATCY 2 cut(s) 486, 669
BstYI RGATCY 2 cut(s) 486, 669
BsuRI GGCC 1 cut(s) 503
BtgI CCRYGG 2 cut(s) 481, 711
BtgZI GCGATG 1 cut(s) 544
BtsCI GGATG 1 cut(s) 507
BtsI GCAGTG 1 cut(s) 770
BtsIMutI CAGTG 3 cut(s) 468, 534, 770
Cac8I GCNNGC 1 cut(s) 410
CfoI GCGC 1 cut(s) 665
Cfr42I CCGCGG 1 cut(s) 484
CseI GACGC 6 cut(s) 55, 304, 536, 602, 623, 664
Csp6I GTAC 3 cut(s) 322, 451, 478
CspCI CAANNNNNGTGG 2 cut(s) 748, 783
CviAII CATG 3 cut(s) 325, 409, 475
CviJI RGCY 8 cut(s) 195, 233, 280, 289, 503, 516, 590, 640
CviKI_1 RGCY 8 cut(s) 195, 233, 280, 289, 503, 516, 590, 640
CviQI GTAC 3 cut(s) 322, 451, 478
DdeI CTNAG 1 cut(s) 641
DinI GGCGCC 1 cut(s) 664
DpnI GATC 5 cut(s) 300, 446, 488, 570, 671
DpnII GATC 5 cut(s) 298, 444, 486, 568, 669
DrdI GACNNNNNNGTC 1 cut(s) 154
DriI GACNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 224, 419
Eam1105I GACNNNNNGTC 1 cut(s) 65
EarI CTCTTC 2 cut(s) 224, 419
EciI GGCGGA 2 cut(s) 373, 530
Ecl136II GAGCTC 1 cut(s) 640
Eco130I CCWWGG 1 cut(s) 737
Eco147I AGGCCT 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 640
EcoRII CCWGG 3 cut(s) 461, 522, 694
EcoT14I CCWWGG 1 cut(s) 737
EcoT38I GRGCYC 1 cut(s) 642
EgeI GGCGCC 1 cut(s) 664
EheI GGCGCC 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 737
Esp3I CGTCTC 1 cut(s) 606
FaeI CATG 3 cut(s) 328, 412, 478
FaiI YATR 6 cut(s) 160, 326, 410, 476, 731, 757
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 324, 408, 474
FauI CCCGC 3 cut(s) 71, 122, 476
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 642
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 664
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 666
HaeIII GGCC 1 cut(s) 503
HapII CCGG 1 cut(s) 513
HgaI GACGC 6 cut(s) 55, 304, 536, 602, 623, 664
HhaI GCGC 1 cut(s) 665
Hin1I GRCGYC 4 cut(s) 315, 528, 594, 663
Hin1II CATG 3 cut(s) 328, 412, 478
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HinfI GANTC 3 cut(s) 458, 633, 689
HpaII CCGG 1 cut(s) 513
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 2 cut(s) 46, 468
Hpy188I TCNGA 1 cut(s) 611
Hpy188III TCNNGA 3 cut(s) 9, 442, 679
Hpy8I GTNNAC 2 cut(s) 46, 468
Hpy99I CGWCG 6 cut(s) 94, 151, 254, 554, 569, 596
HpyAV CCTTC 2 cut(s) 196, 235
HpyCH4III ACNGT 3 cut(s) 43, 472, 538
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 1 cut(s) 722
HpyF10VI GCNNNNNNNGC 7 cut(s) 82, 123, 201, 204, 286, 560, 596
HpyF3I CTNAG 1 cut(s) 641
HpySE526I ACGT 1 cut(s) 657
Hsp92I GRCGYC 4 cut(s) 315, 528, 594, 663
Hsp92II CATG 3 cut(s) 328, 412, 478
HspAI GCGC 1 cut(s) 663
KasI GGCGCC 1 cut(s) 662
KspI CCGCGG 1 cut(s) 484
Kzo9I GATC 5 cut(s) 298, 444, 486, 568, 669
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 1 cut(s) 588
Lsp1109I GCAGC 8 cut(s) 129, 132, 135, 182, 185, 188, 191, 409
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 1 cut(s) 653
MalI GATC 5 cut(s) 300, 446, 488, 570, 671
MboI GATC 5 cut(s) 298, 444, 486, 568, 669
MboII GAAGA 3 cut(s) 211, 295, 406
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 2 cut(s) 486, 669
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 2 cut(s) 577, 723
Mly113I GGCGCC 1 cut(s) 663
MlyI GAGTC 2 cut(s) 467, 642
MslI CAYNNNNRTG 2 cut(s) 407, 473
MspA1I CMGCKG 2 cut(s) 422, 483
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 4 cut(s) 463, 513, 524, 696
MunI CAATTG 1 cut(s) 723
MvaI CCWGG 3 cut(s) 463, 524, 696
MvnI CGCG 3 cut(s) 66, 483, 675
MwoI GCNNNNNNNGC 7 cut(s) 82, 123, 201, 204, 286, 560, 596
NarI GGCGCC 1 cut(s) 663
NciI CCSGG 1 cut(s) 513
NdeII GATC 5 cut(s) 298, 444, 486, 568, 669
NlaIII CATG 3 cut(s) 328, 412, 478
NlaIV GGNNCC 2 cut(s) 488, 664
NmuCI GTSAC 1 cut(s) 653
NspI RCATGY 1 cut(s) 412
PaeI GCATGC 1 cut(s) 412
PceI AGGCCT 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 633
PfeI GAWTC 1 cut(s) 689
PflFI GACNNNGTC 2 cut(s) 151, 632
PflMI CCANNNNNTGG 1 cut(s) 325
Ple19I CGATCG 1 cut(s) 571
PleI GAGTC 2 cut(s) 466, 641
PluTI GGCGCC 1 cut(s) 666
PpsI GAGTC 2 cut(s) 466, 641
Psp124BI GAGCTC 1 cut(s) 642
Psp6I CCWGG 3 cut(s) 461, 522, 694
PspGI CCWGG 3 cut(s) 461, 522, 694
PspN4I GGNNCC 2 cut(s) 488, 664
PsuI RGATCY 2 cut(s) 486, 669
PsyI GACNNNGTC 2 cut(s) 151, 632
PvuI CGATCG 1 cut(s) 571
RsaI GTAC 3 cut(s) 323, 452, 479
RsaNI GTAC 3 cut(s) 322, 451, 478
RseI CAYNNNNRTG 2 cut(s) 407, 473
SacI GAGCTC 1 cut(s) 642
SacII CCGCGG 1 cut(s) 484
SapI GCTCTTC 1 cut(s) 419
Sau3AI GATC 5 cut(s) 298, 444, 486, 568, 669
SchI GAGTC 2 cut(s) 467, 642
ScrFI CCNGG 4 cut(s) 463, 513, 524, 696
SduI GDGCHC 1 cut(s) 642
SetI ASST 7 cut(s) 155, 383, 441, 467, 642, 660, 708
SfaNI GCATC 1 cut(s) 339
SfoI GGCGCC 1 cut(s) 664
Sfr303I CCGCGG 1 cut(s) 484
SgrBI CCGCGG 1 cut(s) 484
SmiMI CAYNNNNRTG 2 cut(s) 407, 473
SphI GCATGC 1 cut(s) 412
Sse9I AATT 2 cut(s) 577, 723
SseBI AGGCCT 1 cut(s) 503
SspDI GGCGCC 1 cut(s) 662
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 642
StuI AGGCCT 1 cut(s) 503
StyD4I CCNGG 4 cut(s) 461, 511, 522, 694
StyI CCWWGG 1 cut(s) 737
TaaI ACNGT 3 cut(s) 43, 472, 538
TaiI ACGT 1 cut(s) 660
TaqI TCGA 3 cut(s) 567, 636, 687
TaqII GACCGA 1 cut(s) 645
TasI AATT 2 cut(s) 577, 723
TatI WGTACW 1 cut(s) 321
TauI GCSGC 3 cut(s) 88, 292, 599
TfiI GAWTC 1 cut(s) 689
TscAI CASTG 3 cut(s) 475, 541, 770
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 8 cut(s) 117, 120, 123, 195, 198, 201, 204, 422
Tsp45I GTSAC 1 cut(s) 653
TspGWI ACGGA 3 cut(s) 45, 63, 700
TspRI CASTG 3 cut(s) 475, 541, 770
Tth111I GACNNNGTC 2 cut(s) 151, 632
Van91I CCANNNNNTGG 1 cut(s) 325
XceI RCATGY 1 cut(s) 412
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.