Rh1CG073700

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004760
Physical Location & Seq
Reverse (-)
15266898 .. 15267805
908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG073700.1

Sequence Viewer

Length: 405 bp
ATGGGCATCAACTCACCCAATCCCACCACCGACCCGAACCTGGCCTCCTCCGCCTCTCTCTCCCTCAGCATTCGCCTGCTCTTCTCCGCCGAGAACCCTAACAAGGTCGGAATCAAGTACGGCGAGTACAGGTTCACTGTCATGTACCGCGGCATCCCTTTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGCAGGTCGTCGCCACCATCGCAGTCGATCGCGCCAATCTCATTCAGGTCGACGCCGTCGATTTAATCCGCGACGCCTCCCTCAACGACCGGGTCGAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATTGATTCTCCAGGGTGGAAGGCGACGGGGCCGATTCGATCAAGACGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

134

Amino Acids

14.55

Weight (kDa)

10.18

Isoelectric Point (pI)

26.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 28 - 112 2e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 327
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 258
AccII CGCG 4 cut(s) 150, 240, 279, 342
AciI CCGC 6 cut(s) 51, 87, 148, 150, 277, 340
AclWI GGATC 1 cut(s) 331
AcyI GRCGYC 4 cut(s) 261, 282, 324, 330
AfaI GTAC 3 cut(s) 119, 128, 146
AfiI CCNNNNNNNGG 3 cut(s) 40, 103, 316
AgsI TTSAA 1 cut(s) 349
AjnI CCWGG 2 cut(s) 39, 361
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw21I GWGCWC 1 cut(s) 309
AlwI GGATC 1 cut(s) 331
AoxI GGCC 4 cut(s) 42, 168, 195, 380
AspLEI GCGC 2 cut(s) 242, 332
AspS9I GGNCC 2 cut(s) 196, 380
AsuC2I CCSGG 3 cut(s) 180, 299, 311
AsuHPI GGTGA 2 cut(s) 6, 332
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 309
BbvCI CCTCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 136, 248
BciT130I CCWGG 2 cut(s) 41, 363
BcnI CCSGG 3 cut(s) 180, 299, 311
BfoI RGCGCY 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 5 cut(s) 41, 180, 299, 311, 363
BmgT120I GGNCC 2 cut(s) 196, 380
BmiI GGNNCC 2 cut(s) 331, 381
BmrFI CCNGG 5 cut(s) 41, 180, 299, 311, 363
BmsI GCATC 2 cut(s) 15, 162
BpmI CTGGAG 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 65
BpuMI CCSGG 3 cut(s) 180, 299, 311
BsaHI GRCGYC 4 cut(s) 261, 282, 324, 330
BsaJI CCNNGG 3 cut(s) 148, 178, 362
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 103, 316
BseBI CCWGG 2 cut(s) 41, 363
BseDI CCNNGG 3 cut(s) 148, 178, 362
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 3 cut(s) 40, 103, 316
BseMII CTCAG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 37
Bsh1236I CGCG 4 cut(s) 150, 240, 279, 342
Bsh1285I CGRYCG 2 cut(s) 238, 298
BshFI GGCC 4 cut(s) 44, 170, 197, 382
BshNI GGYRCC 1 cut(s) 329
BsiEI CGRYCG 2 cut(s) 238, 298
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 3 cut(s) 180, 298, 310
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 40, 103, 316
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 69
BsnI GGCC 4 cut(s) 44, 170, 197, 382
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 3 cut(s) 235, 336, 389
BspACI CCGC 6 cut(s) 51, 87, 148, 150, 277, 340
BspANI GGCC 4 cut(s) 44, 170, 197, 382
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 4 cut(s) 150, 240, 279, 342
BspLI GGNNCC 2 cut(s) 331, 381
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 331
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 148, 178, 362
BssMI GATC 3 cut(s) 235, 336, 389
BssNI GRCGYC 4 cut(s) 261, 282, 324, 330
Bst2UI CCWGG 2 cut(s) 41, 363
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 4 cut(s) 261, 282, 324, 330
BstC8I GCNNGC 2 cut(s) 77, 195
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 4 cut(s) 150, 240, 279, 342
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 242, 332
BstKTI GATC 3 cut(s) 238, 339, 392
BstMBI GATC 3 cut(s) 235, 336, 389
BstMCI CGRYCG 2 cut(s) 238, 298
BstMWI GCNNNNNNNGC 2 cut(s) 50, 227
BstNI CCWGG 2 cut(s) 41, 363
BstSCI CCNGG 5 cut(s) 39, 178, 297, 309, 361
BstUI CGCG 4 cut(s) 150, 240, 279, 342
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuRI GGCC 4 cut(s) 44, 170, 197, 382
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 211
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 77, 195
CfoI GCGC 2 cut(s) 242, 332
Cfr13I GGNCC 2 cut(s) 196, 380
Cfr42I CCGCGG 1 cut(s) 151
CseI GACGC 4 cut(s) 193, 269, 290, 331
Csp6I GTAC 3 cut(s) 118, 127, 145
CviAII CATG 1 cut(s) 142
CviJI RGCY 6 cut(s) 44, 170, 183, 197, 307, 382
CviKI_1 RGCY 6 cut(s) 44, 170, 183, 197, 307, 382
CviQI GTAC 3 cut(s) 118, 127, 145
DdeI CTNAG 1 cut(s) 65
DinI GGCGCC 1 cut(s) 331
DpnI GATC 3 cut(s) 237, 338, 391
DpnII GATC 3 cut(s) 235, 336, 389
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 2 cut(s) 40, 76
Ecl136II GAGCTC 1 cut(s) 307
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 39, 361
EcoT38I GRGCYC 1 cut(s) 309
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
FaeI CATG 1 cut(s) 145
FaiI YATR 1 cut(s) 143
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 141
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 151
GlaI GCGC 2 cut(s) 241, 331
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 4 cut(s) 44, 170, 197, 382
HapII CCGG 3 cut(s) 180, 298, 310
HgaI GACGC 4 cut(s) 193, 269, 290, 331
HhaI GCGC 2 cut(s) 242, 332
Hin1I GRCGYC 4 cut(s) 261, 282, 324, 330
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 2 cut(s) 240, 330
HinP1I GCGC 2 cut(s) 240, 330
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 3 cut(s) 111, 356, 385
HpaII CCGG 3 cut(s) 180, 298, 310
HphI GGTGA 2 cut(s) 6, 332
Hpy166II GTNNAC 2 cut(s) 135, 259
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 346, 393
Hpy8I GTNNAC 2 cut(s) 135, 259
Hpy99I CGWCG 6 cut(s) 221, 263, 269, 284, 329, 379
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 227
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 4 cut(s) 261, 282, 324, 330
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 2 cut(s) 240, 330
KasI GGCGCC 1 cut(s) 329
KspI CCGCGG 1 cut(s) 151
Kzo9I GATC 3 cut(s) 235, 336, 389
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 312
LweI GCATC 2 cut(s) 15, 162
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 320
MalI GATC 3 cut(s) 237, 338, 391
MboI GATC 3 cut(s) 235, 336, 389
MboII GAAGA 2 cut(s) 73, 178
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 309
Mly113I GGCGCC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 7 cut(s) 55, 58, 64, 74, 181, 295, 299
MseI TTAA 2 cut(s) 272, 403
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 3 cut(s) 180, 298, 310
MspR9I CCNGG 5 cut(s) 41, 180, 299, 311, 363
Mva1269I GAATGC 1 cut(s) 69
MvaI CCWGG 2 cut(s) 41, 363
MvnI CGCG 4 cut(s) 150, 240, 279, 342
MwoI GCNNNNNNNGC 2 cut(s) 50, 227
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 3 cut(s) 180, 299, 311
NdeII GATC 3 cut(s) 235, 336, 389
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 2 cut(s) 331, 381
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 320
PceI AGGCCT 1 cut(s) 170
PciSI GCTCTTC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 300
PctI GAATGC 1 cut(s) 69
PfeI GAWTC 3 cut(s) 111, 356, 385
PflFI GACNNNGTC 2 cut(s) 263, 299
PkrI GCNGC 1 cut(s) 152
Ple19I CGATCG 1 cut(s) 238
PluTI GGCGCC 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 39, 361
PspGI CCWGG 2 cut(s) 39, 361
PspN4I GGNNCC 2 cut(s) 331, 381
PspPI GGNCC 2 cut(s) 196, 380
PsuI RGATCY 1 cut(s) 336
PsyI GACNNNGTC 2 cut(s) 263, 299
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 3 cut(s) 119, 128, 146
RsaNI GTAC 3 cut(s) 118, 127, 145
RseI CAYNNNNRTG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 309
SacII CCGCGG 1 cut(s) 151
SalI GTCGAC 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 272, 403
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 3 cut(s) 235, 336, 389
Sau96I GGNCC 2 cut(s) 196, 380
ScrFI CCNGG 5 cut(s) 41, 180, 299, 311, 363
SduI GDGCHC 1 cut(s) 309
SetI ASST 7 cut(s) 42, 108, 134, 216, 258, 309, 327
SfaNI GCATC 2 cut(s) 15, 162
SfoI GGCGCC 1 cut(s) 331
Sfr303I CCGCGG 1 cut(s) 151
SgrBI CCGCGG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 140
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 6 cut(s) 51, 87, 148, 150, 277, 340
SspDI GGCGCC 1 cut(s) 329
SstI GAGCTC 1 cut(s) 309
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 5 cut(s) 39, 178, 297, 309, 361
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 327
TaqI TCGA 5 cut(s) 234, 258, 267, 303, 388
TatI WGTACW 1 cut(s) 126
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 3 cut(s) 111, 356, 385
Tru1I TTAA 2 cut(s) 272, 403
Tru9I TTAA 2 cut(s) 272, 403
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 142
Tth111I GACNNNGTC 2 cut(s) 263, 299
XmiI GTMKAC 1 cut(s) 258
ZraI GACGTC 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.