Rroxscaffold_3G00235920

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004760
Physical Location & Seq
Forward (+)
23136127 .. 23145233
9107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235920.1

Sequence Viewer

Length: 582 bp
ATGGGCATCAACTCACCCAATCCCACCACCGACCCGAACCCGAACCCGGCCTCCTCCGCCTCTCTCTCCCTCAGCATTCGCCTGCTCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGCATCCCTTTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGCAGGTCGTCGCCACCATCGCCGTCGATCGCGCCAATCTCATTCAGGCCGACGCCGCCGATTTAATCCGCGACGCCTCGCTCAACGACCGGGTCGAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGATTCTCCTGGCGTTCAGAAGGGAACAGAGTTTAGCAGTAATGCGACTGTGACTGTGACTAATCGGCCTTTCTGGGAGGTAAAAGCTTTGTTGGCCCGCCATGGCCGCTGTAGGCCTCATGTAGACCCCATATTGCCGGTTTCCGTGGATTGTGCAATCGTTATAAGTCCAAGGAAGCAGTCTCTTACTTACAAGCAGATAAATCTAACTCAAGATCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

193

Amino Acids

20.98

Weight (kDa)

9.79

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 30 - 112 2e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 524
AatII GACGTC 1 cut(s) 333
Acc36I ACCTGC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 483
AccII CGCG 4 cut(s) 156, 246, 285, 348
AciI CCGC 9 cut(s) 57, 93, 154, 156, 270, 283, 346, 457, 466
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 463
AcyI GRCGYC 4 cut(s) 267, 288, 330, 336
AfaI GTAC 2 cut(s) 125, 152
AfiI CCNNNNNNNGG 3 cut(s) 46, 109, 322
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 2 cut(s) 134, 367
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 2 cut(s) 313, 446
AluI AGCT 2 cut(s) 313, 446
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 1 cut(s) 337
AoxI GGCC 8 cut(s) 48, 174, 201, 261, 425, 453, 463, 473
AspLEI GCGC 2 cut(s) 248, 338
AspS9I GGNCC 2 cut(s) 202, 454
AsuC2I CCSGG 4 cut(s) 47, 186, 305, 317
AsuHPI GGTGA 2 cut(s) 6, 338
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BbvCI CCTCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 239
BceAI ACGGC 2 cut(s) 142, 221
BciT130I CCWGG 2 cut(s) 136, 369
BcnI CCSGG 4 cut(s) 47, 186, 305, 317
BcoDI GTCTC 1 cut(s) 546
BfmI CTRYAG 1 cut(s) 469
BfoI RGCGCY 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 3 cut(s) 157, 270, 466
BlsI GCNGC 3 cut(s) 158, 271, 467
Bme1390I CCNGG 6 cut(s) 47, 136, 186, 305, 317, 369
BmgT120I GGNCC 2 cut(s) 202, 454
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 6 cut(s) 47, 136, 186, 305, 317, 369
BmsI GCATC 2 cut(s) 15, 168
Bpu10I CCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 555
BpuMI CCSGG 4 cut(s) 47, 186, 305, 317
Bsa29I ATCGAT 1 cut(s) 360
BsaHI GRCGYC 4 cut(s) 267, 288, 330, 336
BsaJI CCNNGG 5 cut(s) 154, 184, 460, 504, 530
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 109, 322
Bse118I RCCGGY 1 cut(s) 496
BseBI CCWGG 2 cut(s) 136, 369
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 5 cut(s) 154, 184, 460, 504, 530
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 3 cut(s) 46, 109, 322
BseMII CTCAG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 43
Bsh1236I CGCG 4 cut(s) 156, 246, 285, 348
Bsh1285I CGRYCG 2 cut(s) 244, 304
BshFI GGCC 8 cut(s) 50, 176, 203, 263, 427, 455, 465, 475
BshNI GGYRCC 1 cut(s) 335
BshVI ATCGAT 1 cut(s) 360
BsiEI CGRYCG 2 cut(s) 244, 304
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 5 cut(s) 47, 186, 304, 316, 497
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 3 cut(s) 46, 109, 322
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 8 cut(s) 50, 176, 203, 263, 427, 455, 465, 475
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 3 cut(s) 241, 342, 574
Bsp19I CCATGG 1 cut(s) 460
BspACI CCGC 9 cut(s) 57, 93, 154, 156, 270, 283, 346, 457, 466
BspANI GGCC 8 cut(s) 50, 176, 203, 263, 427, 455, 465, 475
BspCNI CTCAG 1 cut(s) 84
BspDI ATCGAT 1 cut(s) 360
BspFNI CGCG 4 cut(s) 156, 246, 285, 348
BspLI GGNNCC 1 cut(s) 337
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 1 cut(s) 337
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 5 cut(s) 154, 184, 460, 504, 530
BssMI GATC 3 cut(s) 241, 342, 574
BssNI GRCGYC 4 cut(s) 267, 288, 330, 336
BssT1I CCWWGG 2 cut(s) 460, 530
Bst2UI CCWGG 2 cut(s) 136, 369
Bst4CI ACNGT 3 cut(s) 145, 409, 415
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 4 cut(s) 267, 288, 330, 336
BstC8I GCNNGC 3 cut(s) 83, 201, 457
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 3 cut(s) 154, 460, 504
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 4 cut(s) 156, 246, 285, 348
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 248, 338
BstKTI GATC 3 cut(s) 244, 345, 577
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 3 cut(s) 241, 342, 574
BstMCI CGRYCG 2 cut(s) 244, 304
BstMWI GCNNNNNNNGC 5 cut(s) 56, 233, 269, 452, 465
BstNI CCWGG 2 cut(s) 136, 369
BstSCI CCNGG 6 cut(s) 45, 134, 184, 303, 315, 367
BstSFI CTRYAG 1 cut(s) 469
BstUI CGCG 4 cut(s) 156, 246, 285, 348
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 8 cut(s) 50, 176, 203, 263, 427, 455, 465, 475
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 3 cut(s) 154, 460, 504
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 141
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 3 cut(s) 83, 201, 457
CfoI GCGC 2 cut(s) 248, 338
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 202, 454
Cfr42I CCGCGG 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 360
CseI GACGC 4 cut(s) 199, 275, 296, 337
Csp6I GTAC 2 cut(s) 124, 151
CviAII CATG 3 cut(s) 148, 461, 479
CviQI GTAC 2 cut(s) 124, 151
DdeI CTNAG 1 cut(s) 71
DinI GGCGCC 1 cut(s) 337
DpnI GATC 3 cut(s) 243, 344, 576
DpnII GATC 3 cut(s) 241, 342, 574
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 2 cut(s) 46, 82
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 460, 530
Eco147I AGGCCT 2 cut(s) 176, 475
Eco24I GRGCYC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 134, 367
EcoT14I CCWWGG 2 cut(s) 460, 530
EcoT38I GRGCYC 1 cut(s) 315
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
ErhI CCWWGG 2 cut(s) 460, 530
FaeI CATG 3 cut(s) 151, 464, 482
FaiI YATR 5 cut(s) 149, 462, 480, 491, 524
FaqI GGGAC 1 cut(s) 167
FatI CATG 3 cut(s) 147, 460, 478
FauI CCCGC 1 cut(s) 464
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 157, 270, 466
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 3 cut(s) 157, 270, 466
GlaI GCGC 2 cut(s) 247, 337
GluI GCNGC 3 cut(s) 157, 270, 466
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 8 cut(s) 50, 176, 203, 263, 427, 455, 465, 475
HapII CCGG 5 cut(s) 47, 186, 304, 316, 497
HgaI GACGC 4 cut(s) 199, 275, 296, 337
HhaI GCGC 2 cut(s) 248, 338
Hin1I GRCGYC 4 cut(s) 267, 288, 330, 336
Hin1II CATG 3 cut(s) 151, 464, 482
Hin6I GCGC 2 cut(s) 246, 336
HinP1I GCGC 2 cut(s) 246, 336
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 3 cut(s) 117, 131, 362
HpaII CCGG 5 cut(s) 47, 186, 304, 316, 497
HphI GGTGA 2 cut(s) 6, 338
Hpy166II GTNNAC 2 cut(s) 141, 484
Hpy188I TCNGA 2 cut(s) 116, 378
Hpy188III TCNNGA 2 cut(s) 352, 572
Hpy8I GTNNAC 2 cut(s) 141, 484
Hpy99I CGWCG 5 cut(s) 227, 242, 269, 290, 335
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 3 cut(s) 145, 409, 415
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 515
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 233, 269, 452, 465
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 4 cut(s) 267, 288, 330, 336
Hsp92II CATG 3 cut(s) 151, 464, 482
HspAI GCGC 2 cut(s) 246, 336
KasI GGCGCC 1 cut(s) 335
KspI CCGCGG 1 cut(s) 157
Kzo9I GATC 3 cut(s) 241, 342, 574
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 318
LweI GCATC 2 cut(s) 15, 168
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 3 cut(s) 326, 409, 415
MalI GATC 3 cut(s) 243, 344, 576
MboI GATC 3 cut(s) 241, 342, 574
MboII GAAGA 2 cut(s) 79, 184
MflI RGATCY 1 cut(s) 342
MhlI GDGCHC 1 cut(s) 315
Mly113I GGCGCC 1 cut(s) 336
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 8 cut(s) 61, 64, 70, 80, 187, 301, 430, 486
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 2 cut(s) 156, 468
MspI CCGG 5 cut(s) 47, 186, 304, 316, 497
MspR9I CCNGG 6 cut(s) 47, 136, 186, 305, 317, 369
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 2 cut(s) 136, 369
MvnI CGCG 4 cut(s) 156, 246, 285, 348
MwoI GCNNNNNNNGC 5 cut(s) 56, 233, 269, 452, 465
NarI GGCGCC 1 cut(s) 336
NciI CCSGG 4 cut(s) 47, 186, 305, 317
NcoI CCATGG 1 cut(s) 460
NdeII GATC 3 cut(s) 241, 342, 574
NlaIII CATG 3 cut(s) 151, 464, 482
NlaIV GGNNCC 1 cut(s) 337
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 326, 409, 415
PceI AGGCCT 2 cut(s) 176, 475
PciSI GCTCTTC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 117, 362
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 3 cut(s) 158, 271, 467
Ple19I CGATCG 1 cut(s) 244
PleI GAGTC 1 cut(s) 139
PluTI GGCGCC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 139
PsiI TTATAA 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 134, 367
PspGI CCWGG 2 cut(s) 134, 367
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 2 cut(s) 202, 454
PsuI RGATCY 1 cut(s) 342
PsyI GACNNNGTC 1 cut(s) 305
PvuI CGATCG 1 cut(s) 244
RsaI GTAC 2 cut(s) 125, 152
RsaNI GTAC 2 cut(s) 124, 151
RseI CAYNNNNRTG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 315
SacII CCGCGG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 157, 270, 466
Sau3AI GATC 3 cut(s) 241, 342, 574
Sau96I GGNCC 2 cut(s) 202, 454
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 6 cut(s) 47, 136, 186, 305, 317, 369
SduI GDGCHC 1 cut(s) 315
SetI ASST 7 cut(s) 114, 140, 222, 315, 333, 441, 448
SfaNI GCATC 2 cut(s) 15, 168
SfcI CTRYAG 1 cut(s) 469
SfoI GGCGCC 1 cut(s) 337
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
SseBI AGGCCT 2 cut(s) 176, 475
SsiI CCGC 9 cut(s) 57, 93, 154, 156, 270, 283, 346, 457, 466
SspDI GGCGCC 1 cut(s) 335
SstI GAGCTC 1 cut(s) 315
StuI AGGCCT 2 cut(s) 176, 475
StyD4I CCNGG 6 cut(s) 45, 134, 184, 303, 315, 367
StyI CCWWGG 2 cut(s) 460, 530
TaaI ACNGT 3 cut(s) 145, 409, 415
TaiI ACGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 240, 309, 360
TauI GCSGC 3 cut(s) 159, 272, 468
TfiI GAWTC 2 cut(s) 117, 362
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 3 cut(s) 326, 409, 415
Tsp45I GTSAC 3 cut(s) 326, 409, 415
TspGWI ACGGA 2 cut(s) 169, 493
TspRI CASTG 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 483
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.