Rh7BG349600

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004760
Physical Location & Seq
Reverse (-)
36453861 .. 36457411
3551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG349600.1

Sequence Viewer

Length: 849 bp
ATGGCATCATCATCAAGAGCCACCGCCAACTCCCACAGACTCGCCACCGCCCACGCCAACGGGCCCACCGCAAACGGCGACCACCACAGGCCCACAGCAAACGGCGACCACCCCAGGCCCACAGCAAACGGCGACCACCCCAGGCCCACAACAAACGGCGACCACAGGCCGTCAAACCACAGCAGCGGCAGTCGGCACCAGCACTACTACCCCCCAACGACGCCGTATCGGTCGTCGTCCTCGTCGGCTTCGTTCAGAGGCTGCTGCTGCTGCCTCTTCCTGCTCTTCTCCCTCCTGGCGCTCCTGGTCCTGGCCGTCGTGCTCGTGATAATCCTGGCCGTGAAACCCAAGAAGCCGCAGTTCGATCTCCAACAAGTAGGAGTCCAGTACATGGGCATCAACTCGCCCAATCCCACCACCGACCCGAACCCGGCCTCCTCCGCCTCTCTCTCCCTCAGCATTCGCCTGCTCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGCATCCCTTTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGCAGGTCGTCGCCACCATCGCCGTCGATCGCGCCAATCTCATTCAGGCCGACGCCGCCGATTTAATCCGCGACGCCTCGCTCAACGACCGGGTCGAGCTCCGGGTCTTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGATTCTCCTGGCGTTCAGGTTTCCGTGGATTGTGCAATCGTTATAAGTCCAAGGAAGCAGTCTCTTACTTACAAGCAGTGTGGATTTGATGGATTGAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

282

Amino Acids

30.23

Weight (kDa)

9.56

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 158 - 256 2e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 788
AatII GACGTC 1 cut(s) 717
Acc36I ACCTGC 1 cut(s) 592
AccB1I GGYRCC 2 cut(s) 195, 719
AccB7I CCANNNNNTGG 1 cut(s) 391
AccII CGCG 4 cut(s) 540, 630, 669, 732
AclWI GGATC 1 cut(s) 721
AcoI YGGCCR 2 cut(s) 312, 336
AcyI GRCGYC 5 cut(s) 221, 651, 672, 714, 720
AfaI GTAC 3 cut(s) 389, 509, 536
AfiI CCNNNNNNNGG 5 cut(s) 310, 391, 430, 493, 706
AgsI TTSAA 1 cut(s) 739
AjnI CCWGG 8 cut(s) 113, 140, 294, 303, 309, 333, 518, 751
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 1 cut(s) 697
AluI AGCT 1 cut(s) 697
Alw21I GWGCWC 2 cut(s) 324, 699
Alw26I GTCTC 1 cut(s) 810
AlwI GGATC 1 cut(s) 721
AlwNI CAGNNNCTG 1 cut(s) 261
ApaI GGGCCC 1 cut(s) 66
ApeKI GCWGC 5 cut(s) 183, 261, 264, 267, 270
AspLEI GCGC 3 cut(s) 301, 632, 722
AspS9I GGNCC 7 cut(s) 62, 63, 90, 117, 144, 307, 586
AsuC2I CCSGG 4 cut(s) 431, 570, 689, 701
AsuHPI GGTGA 1 cut(s) 722
AvaII GGWCC 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 66
BanI GGYRCC 2 cut(s) 195, 719
BanII GRGCYC 2 cut(s) 66, 699
BauI CACGAG 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 324, 699
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 5 cut(s) 195, 248, 251, 254, 257
BccI CCATC 2 cut(s) 623, 827
BciT130I CCWGG 8 cut(s) 115, 142, 296, 305, 311, 335, 520, 753
BcnI CCSGG 4 cut(s) 431, 570, 689, 701
BcoDI GTCTC 1 cut(s) 810
BfoI RGCGCY 2 cut(s) 302, 723
BfuAI ACCTGC 1 cut(s) 592
BisI GCNGC 9 cut(s) 184, 187, 262, 265, 268, 271, 356, 541, 654
BlsI GCNGC 9 cut(s) 185, 188, 263, 266, 269, 272, 357, 542, 655
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 7 cut(s) 62, 63, 90, 117, 144, 307, 586
BmiI GGNNCC 3 cut(s) 64, 197, 721
BmsI GCATC 3 cut(s) 14, 405, 552
Bpu10I CCTNAGC 1 cut(s) 455
BpuMI CCSGG 4 cut(s) 431, 570, 689, 701
Bsa29I ATCGAT 1 cut(s) 744
BsaHI GRCGYC 5 cut(s) 221, 651, 672, 714, 720
BsaJI CCNNGG 6 cut(s) 113, 140, 538, 568, 768, 794
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 5 cut(s) 310, 391, 430, 493, 706
Bse1I ACTGG 1 cut(s) 385
BseBI CCWGG 8 cut(s) 115, 142, 296, 305, 311, 335, 520, 753
BseCI ATCGAT 1 cut(s) 744
BseDI CCNNGG 6 cut(s) 113, 140, 538, 568, 768, 794
BseGI GGATG 1 cut(s) 543
BseLI CCNNNNNNNGG 5 cut(s) 310, 391, 430, 493, 706
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 5 cut(s) 195, 248, 251, 254, 257
Bsh1236I CGCG 4 cut(s) 540, 630, 669, 732
Bsh1285I CGRYCG 3 cut(s) 233, 628, 688
BshNI GGYRCC 2 cut(s) 195, 719
BshVI ATCGAT 1 cut(s) 744
BsiEI CGRYCG 3 cut(s) 233, 628, 688
BsiHKAI GWGCWC 2 cut(s) 324, 699
BsiSI CCGG 4 cut(s) 431, 570, 688, 700
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 5 cut(s) 310, 391, 430, 493, 706
BsmAI GTCTC 1 cut(s) 810
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 459
Bsp120I GGGCCC 1 cut(s) 62
Bsp1286I GDGCHC 3 cut(s) 66, 324, 699
Bsp143I GATC 3 cut(s) 364, 625, 726
BspCNI CTCAG 1 cut(s) 468
BspDI ATCGAT 1 cut(s) 744
BspFNI CGCG 4 cut(s) 540, 630, 669, 732
BspLI GGNNCC 3 cut(s) 64, 197, 721
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 1 cut(s) 721
BspQI GCTCTTC 2 cut(s) 290, 476
BspT107I GGYRCC 2 cut(s) 195, 719
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 6 cut(s) 113, 140, 538, 568, 768, 794
BssMI GATC 3 cut(s) 364, 625, 726
BssNI GRCGYC 5 cut(s) 221, 651, 672, 714, 720
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 794
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 8 cut(s) 115, 142, 296, 305, 311, 335, 520, 753
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 3 cut(s) 281, 290, 476
BstACI GRCGYC 5 cut(s) 221, 651, 672, 714, 720
BstC8I GCNNGC 2 cut(s) 467, 585
BstDEI CTNAG 1 cut(s) 455
BstDSI CCRYGG 2 cut(s) 538, 768
BstF5I GGATG 1 cut(s) 543
BstFNI CGCG 4 cut(s) 540, 630, 669, 732
BstH2I RGCGCY 2 cut(s) 302, 723
BstHHI GCGC 3 cut(s) 301, 632, 722
BstKTI GATC 3 cut(s) 367, 628, 729
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 3 cut(s) 364, 625, 726
BstMCI CGRYCG 3 cut(s) 233, 628, 688
BstMWI GCNNNNNNNGC 5 cut(s) 267, 270, 440, 617, 653
BstNI CCWGG 8 cut(s) 115, 142, 296, 305, 311, 335, 520, 753
BstSLI GKGCMC 1 cut(s) 66
BstUI CGCG 4 cut(s) 540, 630, 669, 732
BstV1I GCAGC 5 cut(s) 195, 248, 251, 254, 257
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 744
BsuTUI ATCGAT 1 cut(s) 744
BtgI CCRYGG 2 cut(s) 538, 768
BtgZI GCGATG 1 cut(s) 601
BtsCI GGATG 1 cut(s) 543
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 2 cut(s) 525, 827
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 2 cut(s) 467, 585
CaiI CAGNNNCTG 1 cut(s) 261
CfoI GCGC 3 cut(s) 301, 632, 722
Cfr13I GGNCC 7 cut(s) 62, 63, 90, 117, 144, 307, 586
Cfr42I CCGCGG 1 cut(s) 541
ClaI ATCGAT 1 cut(s) 744
CseI GACGC 5 cut(s) 229, 583, 659, 680, 721
Csp6I GTAC 3 cut(s) 388, 508, 535
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 2 cut(s) 391, 532
CviQI GTAC 3 cut(s) 388, 508, 535
DdeI CTNAG 1 cut(s) 455
DinI GGCGCC 1 cut(s) 721
DpnI GATC 3 cut(s) 366, 627, 728
DpnII GATC 3 cut(s) 364, 625, 726
EaeI YGGCCR 2 cut(s) 312, 336
Eam1104I CTCTTC 3 cut(s) 281, 290, 476
EarI CTCTTC 3 cut(s) 281, 290, 476
EciI GGCGGA 2 cut(s) 430, 466
Ecl136II GAGCTC 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 794
Eco147I AGGCCT 1 cut(s) 560
Eco24I GRGCYC 2 cut(s) 66, 699
Eco47I GGWCC 1 cut(s) 307
Eco53kI GAGCTC 1 cut(s) 697
EcoICRI GAGCTC 1 cut(s) 697
EcoRII CCWGG 8 cut(s) 113, 140, 294, 303, 309, 333, 518, 751
EcoT14I CCWWGG 1 cut(s) 794
EcoT38I GRGCYC 2 cut(s) 66, 699
EgeI GGCGCC 1 cut(s) 721
EheI GGCGCC 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 794
FaeI CATG 2 cut(s) 394, 535
FaiI YATR 3 cut(s) 392, 533, 788
FaqI GGGAC 1 cut(s) 551
FatI CATG 2 cut(s) 390, 531
Fnu4HI GCNGC 9 cut(s) 184, 187, 262, 265, 268, 271, 356, 541, 654
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 2 cut(s) 66, 699
Fsp4HI GCNGC 9 cut(s) 184, 187, 262, 265, 268, 271, 356, 541, 654
GlaI GCGC 3 cut(s) 300, 631, 721
GluI GCNGC 9 cut(s) 184, 187, 262, 265, 268, 271, 356, 541, 654
HaeII RGCGCY 2 cut(s) 302, 723
HapII CCGG 4 cut(s) 431, 570, 688, 700
HgaI GACGC 5 cut(s) 229, 583, 659, 680, 721
HhaI GCGC 3 cut(s) 301, 632, 722
Hin1I GRCGYC 5 cut(s) 221, 651, 672, 714, 720
Hin1II CATG 2 cut(s) 394, 535
Hin6I GCGC 3 cut(s) 299, 630, 720
HinP1I GCGC 3 cut(s) 299, 630, 720
HinfI GANTC 5 cut(s) 39, 381, 501, 515, 746
HpaII CCGG 4 cut(s) 431, 570, 688, 700
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 2 cut(s) 257, 500
Hpy188III TCNNGA 3 cut(s) 15, 325, 736
Hpy8I GTNNAC 1 cut(s) 525
Hpy99I CGWCG 9 cut(s) 223, 238, 247, 320, 611, 626, 653, 674, 719
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 1 cut(s) 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 267, 270, 440, 617, 653
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 714
Hsp92I GRCGYC 5 cut(s) 221, 651, 672, 714, 720
Hsp92II CATG 2 cut(s) 394, 535
HspAI GCGC 3 cut(s) 299, 630, 720
KasI GGCGCC 1 cut(s) 719
KspI CCGCGG 1 cut(s) 541
Kzo9I GATC 3 cut(s) 364, 625, 726
LguI GCTCTTC 2 cut(s) 290, 476
LmnI GCTCC 2 cut(s) 306, 702
Lsp1109I GCAGC 5 cut(s) 195, 248, 251, 254, 257
LweI GCATC 3 cut(s) 14, 405, 552
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 1 cut(s) 710
MalI GATC 3 cut(s) 366, 627, 728
MboI GATC 3 cut(s) 364, 625, 726
MboII GAAGA 4 cut(s) 268, 277, 463, 568
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 3 cut(s) 66, 324, 699
Mly113I GGCGCC 1 cut(s) 720
MlyI GAGTC 3 cut(s) 33, 390, 524
MmeI TCCRAC 2 cut(s) 394, 478
MseI TTAA 1 cut(s) 662
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 2 cut(s) 186, 540
MspI CCGG 4 cut(s) 431, 570, 688, 700
Mva1269I GAATGC 1 cut(s) 459
MvaI CCWGG 8 cut(s) 115, 142, 296, 305, 311, 335, 520, 753
MvnI CGCG 4 cut(s) 540, 630, 669, 732
MwoI GCNNNNNNNGC 5 cut(s) 267, 270, 440, 617, 653
NarI GGCGCC 1 cut(s) 720
NciI CCSGG 4 cut(s) 431, 570, 689, 701
NdeII GATC 3 cut(s) 364, 625, 726
NlaIII CATG 2 cut(s) 394, 535
NlaIV GGNNCC 3 cut(s) 64, 197, 721
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 710
PceI AGGCCT 1 cut(s) 560
PciSI GCTCTTC 2 cut(s) 290, 476
PcsI WCGNNNNNNNCGW 3 cut(s) 239, 248, 690
PctI GAATGC 1 cut(s) 459
PfeI GAWTC 2 cut(s) 501, 746
PflFI GACNNNGTC 1 cut(s) 689
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 9 cut(s) 185, 188, 263, 266, 269, 272, 357, 542, 655
Ple19I CGATCG 1 cut(s) 628
PleI GAGTC 3 cut(s) 33, 389, 523
PluTI GGCGCC 1 cut(s) 723
PpsI GAGTC 3 cut(s) 33, 389, 523
PsiI TTATAA 1 cut(s) 788
Psp124BI GAGCTC 1 cut(s) 699
Psp6I CCWGG 8 cut(s) 113, 140, 294, 303, 309, 333, 518, 751
PspGI CCWGG 8 cut(s) 113, 140, 294, 303, 309, 333, 518, 751
PspN4I GGNNCC 3 cut(s) 64, 197, 721
PspOMI GGGCCC 1 cut(s) 62
PspPI GGNCC 7 cut(s) 62, 63, 90, 117, 144, 307, 586
PstNI CAGNNNCTG 1 cut(s) 261
PsuI RGATCY 1 cut(s) 726
PsyI GACNNNGTC 1 cut(s) 689
PvuI CGATCG 1 cut(s) 628
RsaI GTAC 3 cut(s) 389, 509, 536
RsaNI GTAC 3 cut(s) 388, 508, 535
RseI CAYNNNNRTG 1 cut(s) 530
SacI GAGCTC 1 cut(s) 699
SacII CCGCGG 1 cut(s) 541
SapI GCTCTTC 2 cut(s) 290, 476
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 9 cut(s) 184, 187, 262, 265, 268, 271, 356, 541, 654
Sau3AI GATC 3 cut(s) 364, 625, 726
Sau96I GGNCC 7 cut(s) 62, 63, 90, 117, 144, 307, 586
SchI GAGTC 3 cut(s) 33, 390, 524
SduI GDGCHC 3 cut(s) 66, 324, 699
SetI ASST 6 cut(s) 498, 524, 606, 699, 717, 765
SfaNI GCATC 3 cut(s) 14, 405, 552
SfoI GGCGCC 1 cut(s) 721
Sfr303I CCGCGG 1 cut(s) 541
SgrBI CCGCGG 1 cut(s) 541
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 530
SseBI AGGCCT 1 cut(s) 560
SspDI GGCGCC 1 cut(s) 719
SstI GAGCTC 1 cut(s) 699
StuI AGGCCT 1 cut(s) 560
StyI CCWWGG 1 cut(s) 794
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 717
TaqI TCGA 4 cut(s) 363, 624, 693, 744
TaqII GACCGA 1 cut(s) 219
TatI WGTACW 1 cut(s) 387
TauI GCSGC 4 cut(s) 189, 358, 543, 656
TfiI GAWTC 2 cut(s) 501, 746
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TscAI CASTG 2 cut(s) 532, 827
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 5 cut(s) 183, 261, 264, 267, 270
Tsp45I GTSAC 1 cut(s) 710
TspGWI ACGGA 2 cut(s) 553, 757
TspRI CASTG 2 cut(s) 532, 827
Tth111I GACNNNGTC 1 cut(s) 689
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 307
ZraI GACGTC 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.