Rw7G038840

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004760
Physical Location & Seq
Forward (+)
59434674 .. 59435446
773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038840.1

Sequence Viewer

Length: 573 bp
ATGACGCCGTATCGGTCCTTGTCCTTGTCAGCTTCGTTCAAAGGCTGCTGCTGCCTCTTCCTGCTCTTCTCCTTCTTGGCCCTCCTGGTCCTAGCCATCGTCCTCGTGATAATCTTGGCTGTGAAACCCAAGAAGCCGCAGTTCGATCTCCAACAATTAGGAGTCCACATTCGCCTGCTCTTTTGCGTCGAGAACCCCAACAAGGTTGAAATCAAGTACGGTGAGTCCAGGTTCACTATCATGTACCGCGGCATCCCTTTGGGTGAGGCCTCCGTCCCCGGCTTCTTCCAACAAGCCCACAACATCAGGCAGGTCGTCGCCACCATCACCGTTGATCGCGCCAATCTCATTCAGGCCGACGCCGCCGATTTAATCCCCGACACCTCCTTCAACAACCGGGTCGAGCTCCAGGTCTTGGGTGACGTCGGCGCCAAGATCCGCATCTTAAACATCGATTCTCCAGGGTGGAAGGCGACGAGGCCGATTCGATCAAGACGTTCGATCAAGGTGGTGGTCCAGGACCACCTAATAATTTCTCCATGCGGAGTATCATCTGTCCAAATTAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

190

Amino Acids

21.1

Weight (kDa)

9.71

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 63 - 146 1.7e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 415
AccII CGCG 2 cut(s) 249, 339
AciI CCGC 6 cut(s) 137, 247, 249, 363, 439, 543
AclWI GGATC 1 cut(s) 430
AcyI GRCGYC 4 cut(s) 5, 360, 423, 429
AfaI GTAC 2 cut(s) 218, 245
AfiI CCNNNNNNNGG 2 cut(s) 202, 415
AgsI TTSAA 3 cut(s) 40, 209, 391
AjnI CCWGG 5 cut(s) 84, 227, 408, 460, 516
AluBI AGCT 2 cut(s) 32, 406
AluI AGCT 2 cut(s) 32, 406
Alw21I GWGCWC 1 cut(s) 408
AlwI GGATC 1 cut(s) 430
AoxI GGCC 4 cut(s) 78, 267, 354, 479
ApeKI GCWGC 3 cut(s) 45, 48, 51
AspLEI GCGC 2 cut(s) 341, 431
AspS9I GGNCC 5 cut(s) 15, 79, 88, 514, 520
AsuC2I CCSGG 2 cut(s) 279, 398
AsuHPI GGTGA 4 cut(s) 233, 275, 319, 431
AvaII GGWCC 4 cut(s) 15, 88, 514, 520
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 32, 35, 38
BccI CCATC 2 cut(s) 104, 332
BciT130I CCWGG 5 cut(s) 86, 229, 410, 462, 518
BcnI CCSGG 2 cut(s) 279, 398
BfaI CTAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 6 cut(s) 46, 49, 52, 137, 250, 363
BlsI GCNGC 6 cut(s) 47, 50, 53, 138, 251, 364
Bme1390I CCNGG 7 cut(s) 86, 229, 279, 398, 410, 462, 518
Bme18I GGWCC 4 cut(s) 15, 88, 514, 520
BmgT120I GGNCC 5 cut(s) 15, 79, 88, 514, 520
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 7 cut(s) 86, 229, 279, 398, 410, 462, 518
BmsI GCATC 2 cut(s) 261, 450
BpmI CTGGAG 2 cut(s) 392, 444
BpuMI CCSGG 2 cut(s) 279, 398
Bsa29I ATCGAT 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 440
BsaHI GRCGYC 4 cut(s) 5, 360, 423, 429
BsaJI CCNNGG 3 cut(s) 247, 277, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 415
Bse8I GATNNNNATC 1 cut(s) 440
BseBI CCWGG 5 cut(s) 86, 229, 410, 462, 518
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 3 cut(s) 247, 277, 461
BseGI GGATG 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 440
BseLI CCNNNNNNNGG 2 cut(s) 202, 415
BseXI GCAGC 3 cut(s) 32, 35, 38
Bsh1236I CGCG 2 cut(s) 249, 339
BshFI GGCC 4 cut(s) 80, 269, 356, 481
BshNI GGYRCC 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 2 cut(s) 279, 397
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 2 cut(s) 202, 415
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 4 cut(s) 80, 269, 356, 481
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 5 cut(s) 145, 334, 435, 488, 501
BspACI CCGC 6 cut(s) 137, 247, 249, 363, 439, 543
BspANI GGCC 4 cut(s) 80, 269, 356, 481
BspDI ATCGAT 1 cut(s) 453
BspFNI CGCG 2 cut(s) 249, 339
BspLI GGNNCC 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 247, 277, 461
BssMI GATC 5 cut(s) 145, 334, 435, 488, 501
BssNI GRCGYC 4 cut(s) 5, 360, 423, 429
BssSI CACGAG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 5 cut(s) 86, 229, 410, 462, 518
Bst4CI ACNGT 2 cut(s) 221, 331
Bst6I CTCTTC 2 cut(s) 62, 71
BstACI GRCGYC 4 cut(s) 5, 360, 423, 429
BstC8I GCNNGC 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 2 cut(s) 249, 339
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 2 cut(s) 341, 431
BstKTI GATC 5 cut(s) 148, 337, 438, 491, 504
BstMBI GATC 5 cut(s) 145, 334, 435, 488, 501
BstMWI GCNNNNNNNGC 2 cut(s) 51, 362
BstNI CCWGG 5 cut(s) 86, 229, 410, 462, 518
BstSCI CCNGG 7 cut(s) 84, 227, 277, 396, 408, 460, 516
BstUI CGCG 2 cut(s) 249, 339
BstV1I GCAGC 3 cut(s) 32, 35, 38
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 453
BsuRI GGCC 4 cut(s) 80, 269, 356, 481
BsuTUI ATCGAT 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 252
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 176
CfoI GCGC 2 cut(s) 341, 431
Cfr13I GGNCC 5 cut(s) 15, 79, 88, 514, 520
Cfr42I CCGCGG 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 453
CseI GACGC 3 cut(s) 13, 175, 368
Csp6I GTAC 2 cut(s) 217, 244
CviAII CATG 2 cut(s) 241, 540
CviQI GTAC 2 cut(s) 217, 244
DinI GGCGCC 1 cut(s) 430
DpnI GATC 5 cut(s) 147, 336, 437, 490, 503
DpnII GATC 5 cut(s) 145, 334, 435, 488, 501
Eam1104I CTCTTC 2 cut(s) 62, 71
EarI CTCTTC 2 cut(s) 62, 71
Ecl136II GAGCTC 1 cut(s) 406
Eco147I AGGCCT 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 4 cut(s) 15, 88, 514, 520
Eco53kI GAGCTC 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 406
EcoRII CCWGG 5 cut(s) 84, 227, 408, 460, 516
EcoT38I GRGCYC 1 cut(s) 408
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
FaeI CATG 2 cut(s) 244, 543
FaiI YATR 2 cut(s) 242, 541
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 240, 539
Fnu4HI GCNGC 6 cut(s) 46, 49, 52, 137, 250, 363
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 6 cut(s) 46, 49, 52, 137, 250, 363
FspBI CTAG 1 cut(s) 92
GlaI GCGC 2 cut(s) 340, 430
GluI GCNGC 6 cut(s) 46, 49, 52, 137, 250, 363
GsuI CTGGAG 2 cut(s) 392, 444
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 4 cut(s) 80, 269, 356, 481
HapII CCGG 2 cut(s) 279, 397
HgaI GACGC 3 cut(s) 13, 175, 368
HhaI GCGC 2 cut(s) 341, 431
Hin1I GRCGYC 4 cut(s) 5, 360, 423, 429
Hin1II CATG 2 cut(s) 244, 543
Hin6I GCGC 2 cut(s) 339, 429
HinP1I GCGC 2 cut(s) 339, 429
HinfI GANTC 4 cut(s) 162, 224, 455, 484
HpaII CCGG 2 cut(s) 279, 397
HphI GGTGA 4 cut(s) 233, 275, 319, 431
Hpy166II GTNNAC 2 cut(s) 166, 234
Hpy188III TCNNGA 3 cut(s) 106, 190, 492
Hpy8I GTNNAC 2 cut(s) 166, 234
Hpy99I CGWCG 5 cut(s) 191, 320, 362, 428, 478
HpyAV CCTTC 3 cut(s) 82, 397, 463
HpyCH4III ACNGT 2 cut(s) 221, 331
HpyCH4IV ACGT 2 cut(s) 423, 496
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 362
HpySE526I ACGT 2 cut(s) 423, 496
Hsp92I GRCGYC 4 cut(s) 5, 360, 423, 429
Hsp92II CATG 2 cut(s) 244, 543
HspAI GCGC 2 cut(s) 339, 429
KasI GGCGCC 1 cut(s) 428
KspI CCGCGG 1 cut(s) 250
Kzo9I GATC 5 cut(s) 145, 334, 435, 488, 501
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 411
Lsp1109I GCAGC 3 cut(s) 32, 35, 38
LweI GCATC 2 cut(s) 261, 450
MaeI CTAG 1 cut(s) 92
MaeII ACGT 2 cut(s) 423, 496
MaeIII GTNAC 1 cut(s) 419
MalI GATC 5 cut(s) 147, 336, 437, 490, 503
MboI GATC 5 cut(s) 145, 334, 435, 488, 501
MboII GAAGA 3 cut(s) 49, 58, 277
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 3 cut(s) 155, 531, 561
Mly113I GGCGCC 1 cut(s) 429
MlyI GAGTC 2 cut(s) 171, 233
MmeI TCCRAC 2 cut(s) 175, 313
MnlI CCTC 7 cut(s) 65, 92, 113, 259, 280, 394, 471
MseI TTAA 3 cut(s) 371, 446, 564
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 2 cut(s) 279, 397
MspR9I CCNGG 7 cut(s) 86, 229, 279, 398, 410, 462, 518
MvaI CCWGG 5 cut(s) 86, 229, 410, 462, 518
MvnI CGCG 2 cut(s) 249, 339
MwoI GCNNNNNNNGC 2 cut(s) 51, 362
NarI GGCGCC 1 cut(s) 429
NciI CCSGG 2 cut(s) 279, 398
NdeII GATC 5 cut(s) 145, 334, 435, 488, 501
NlaIII CATG 2 cut(s) 244, 543
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 419
PceI AGGCCT 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PfeI GAWTC 2 cut(s) 455, 484
PflMI CCANNNNNTGG 1 cut(s) 415
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 6 cut(s) 47, 50, 53, 138, 251, 364
PleI GAGTC 2 cut(s) 170, 232
PluTI GGCGCC 1 cut(s) 432
PpsI GAGTC 2 cut(s) 170, 232
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 5 cut(s) 84, 227, 408, 460, 516
PspGI CCWGG 5 cut(s) 84, 227, 408, 460, 516
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 5 cut(s) 15, 79, 88, 514, 520
PsuI RGATCY 1 cut(s) 435
RsaI GTAC 2 cut(s) 218, 245
RsaNI GTAC 2 cut(s) 217, 244
RseI CAYNNNNRTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 408
SacII CCGCGG 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 371, 446, 564
SatI GCNGC 6 cut(s) 46, 49, 52, 137, 250, 363
Sau3AI GATC 5 cut(s) 145, 334, 435, 488, 501
Sau96I GGNCC 5 cut(s) 15, 79, 88, 514, 520
SchI GAGTC 2 cut(s) 171, 233
ScrFI CCNGG 7 cut(s) 86, 229, 279, 398, 410, 462, 518
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 2 cut(s) 261, 450
SfoI GGCGCC 1 cut(s) 430
Sfr303I CCGCGG 1 cut(s) 250
SgrBI CCGCGG 1 cut(s) 250
SinI GGWCC 4 cut(s) 15, 88, 514, 520
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 3 cut(s) 155, 531, 561
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 6 cut(s) 137, 247, 249, 363, 439, 543
SspDI GGCGCC 1 cut(s) 428
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 408
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 7 cut(s) 84, 227, 277, 396, 408, 460, 516
TaaI ACNGT 2 cut(s) 221, 331
TaiI ACGT 2 cut(s) 426, 499
TaqI TCGA 6 cut(s) 144, 189, 402, 453, 487, 500
TasI AATT 3 cut(s) 155, 531, 561
TauI GCSGC 3 cut(s) 139, 252, 365
TfiI GAWTC 2 cut(s) 455, 484
Tru1I TTAA 3 cut(s) 371, 446, 564
Tru9I TTAA 3 cut(s) 371, 446, 564
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 3 cut(s) 45, 48, 51
Tsp45I GTSAC 1 cut(s) 419
TspGWI ACGGA 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 4 cut(s) 15, 88, 514, 520
XspI CTAG 1 cut(s) 92
ZraI GACGTC 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.