FvH4_5g29780

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004760
Physical Location & Seq
Reverse (-)
20682777 .. 20685772
2996 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29780.t1

Sequence Viewer

Length: 738 bp
ATGGCGTCATCATCGTCGGCCAGACCCACCGCCAACGGAGACCACAGGCCGCGTCCGCCGCCGTCAAACCCCAGCAACAGCAACAGCAACCGCCACCAGCACTACTACCCAACGACGTCGTATCATTCTTCCTCCTCCTCCTCCGCTTCCTTCAAAGGCTGCTGCTGCTGCCTCTTCCTCCTCTTCTCCTTCCTCGCCCTTCTCGTCCTCGCCGTCGTCCTCGTCATCATCCTCGCCGTCAAACCCAAGAAGCCCCAGTTCGATCTCCAACAAGTCGGCGTCCAGTACATGGGCATCAACTCCCCCGACCCGAACCCGAACCCGACTTCGGCCTCCCTCTCCCTCAACATCCGCATGCTCTTCTCCGCCGAGAACCCCAACAAGGTCGGAATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGCATCCCATTGGGCAAGGCCTCCGTCCCCGGCTTCTTCCAGCAGGCCCACAGCGTCAGGGAGGTCGTCGCAACCATCGCCGTCGATCGCGCCAATCTCATTCAGGCCGACGCCGCCGATTTAATCCGCGACGCTTCTCTCAACGACCGGGTCGAGCTCCGGGTCCTGGGTGACGTCGGCGCCAAGATCCGCGTCTTGAACATCGACTCTCCTGGCGTTCAGGTTTCCGTGGATTGTGCGATCGTTATAAGTCCAAGGAAGCAGTCTCTCACTTACAAGCAGTGTGGATTTGATGGATTGAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

246

Amino Acids

26.45

Weight (kDa)

9.32

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 121 - 219 8.9e-12 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 677
AatII GACGTC 2 cut(s) 119, 606
AccB1I GGYRCC 1 cut(s) 608
AccB7I CCANNNNNTGG 1 cut(s) 289
AccII CGCG 5 cut(s) 52, 429, 519, 558, 621
AclWI GGATC 1 cut(s) 610
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 6 cut(s) 5, 116, 279, 540, 603, 609
AfaI GTAC 3 cut(s) 287, 398, 425
AfiI CCNNNNNNNGG 4 cut(s) 289, 328, 382, 595
AgsI TTSAA 2 cut(s) 154, 628
AjnI CCWGG 3 cut(s) 407, 594, 640
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 33, 699
AlwI GGATC 1 cut(s) 610
AoxI GGCC 6 cut(s) 18, 47, 330, 447, 474, 534
ApeKI GCWGC 4 cut(s) 159, 162, 165, 168
AspLEI GCGC 2 cut(s) 521, 611
AspS9I GGNCC 2 cut(s) 475, 592
AsuC2I CCSGG 3 cut(s) 459, 578, 590
AsuHPI GGTGA 1 cut(s) 611
AvaII GGWCC 1 cut(s) 592
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 4 cut(s) 146, 149, 152, 155
BccI CCATC 2 cut(s) 512, 716
BceAI ACGGC 5 cut(s) 46, 197, 221, 415, 494
BciT130I CCWGG 3 cut(s) 409, 596, 642
BcnI CCSGG 3 cut(s) 459, 578, 590
BcoDI GTCTC 2 cut(s) 33, 699
BfoI RGCGCY 1 cut(s) 612
BisI GCNGC 8 cut(s) 50, 59, 160, 163, 166, 169, 430, 543
BlsI GCNGC 8 cut(s) 51, 60, 161, 164, 167, 170, 431, 544
Bme1390I CCNGG 6 cut(s) 409, 459, 578, 590, 596, 642
Bme18I GGWCC 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 475, 592
BmiI GGNNCC 2 cut(s) 593, 610
BmrFI CCNGG 6 cut(s) 409, 459, 578, 590, 596, 642
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 2 cut(s) 303, 441
BmuI ACTGGG 1 cut(s) 250
BpuMI CCSGG 3 cut(s) 459, 578, 590
BsaHI GRCGYC 6 cut(s) 5, 116, 279, 540, 603, 609
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 427, 457, 595, 657, 683
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 328, 382, 595
Bse1I ACTGG 2 cut(s) 256, 283
BseBI CCWGG 3 cut(s) 409, 596, 642
BseDI CCNNGG 5 cut(s) 427, 457, 595, 657, 683
BseGI GGATG 3 cut(s) 228, 348, 432
BseLI CCNNNNNNNGG 4 cut(s) 289, 328, 382, 595
BseNI ACTGG 2 cut(s) 256, 283
BseRI GAGGAG 4 cut(s) 124, 127, 130, 170
BseXI GCAGC 4 cut(s) 146, 149, 152, 155
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 5 cut(s) 52, 429, 519, 558, 621
Bsh1285I CGRYCG 3 cut(s) 517, 577, 672
BshFI GGCC 6 cut(s) 20, 49, 332, 449, 476, 536
BshNI GGYRCC 1 cut(s) 608
BsiEI CGRYCG 3 cut(s) 517, 577, 672
BsiHKAI GWGCWC 1 cut(s) 588
BsiSI CCGG 3 cut(s) 459, 577, 589
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 4 cut(s) 289, 328, 382, 595
BsmAI GTCTC 2 cut(s) 33, 699
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 6 cut(s) 20, 49, 332, 449, 476, 536
Bso31I GGTCTC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 4 cut(s) 262, 514, 615, 669
BspANI GGCC 6 cut(s) 20, 49, 332, 449, 476, 536
BspFNI CGCG 5 cut(s) 52, 429, 519, 558, 621
BspLI GGNNCC 2 cut(s) 593, 610
BspPI GGATC 1 cut(s) 610
BspQI GCTCTTC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 33
BsrI ACTGG 2 cut(s) 256, 283
BssECI CCNNGG 5 cut(s) 427, 457, 595, 657, 683
BssMI GATC 4 cut(s) 262, 514, 615, 669
BssNI GRCGYC 6 cut(s) 5, 116, 279, 540, 603, 609
BssT1I CCWWGG 1 cut(s) 683
Bst2UI CCWGG 3 cut(s) 409, 596, 642
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 3 cut(s) 179, 188, 365
BstACI GRCGYC 6 cut(s) 5, 116, 279, 540, 603, 609
BstC8I GCNNGC 2 cut(s) 356, 474
BstDSI CCRYGG 2 cut(s) 427, 657
BstF5I GGATG 3 cut(s) 228, 348, 432
BstFNI CGCG 5 cut(s) 52, 429, 519, 558, 621
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 2 cut(s) 521, 611
BstKTI GATC 4 cut(s) 265, 517, 618, 672
BstMAI GTCTC 2 cut(s) 33, 699
BstMBI GATC 4 cut(s) 262, 514, 615, 669
BstMCI CGRYCG 3 cut(s) 517, 577, 672
BstMWI GCNNNNNNNGC 6 cut(s) 55, 58, 165, 168, 506, 542
BstNI CCWGG 3 cut(s) 409, 596, 642
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 6 cut(s) 407, 457, 576, 588, 594, 640
BstUI CGCG 5 cut(s) 52, 429, 519, 558, 621
BstV1I GCAGC 4 cut(s) 146, 149, 152, 155
BstX2I RGATCY 1 cut(s) 615
BstYI RGATCY 1 cut(s) 615
BsuRI GGCC 6 cut(s) 20, 49, 332, 449, 476, 536
BtgI CCRYGG 2 cut(s) 427, 657
BtgZI GCGATG 1 cut(s) 490
BtsCI GGATG 3 cut(s) 228, 348, 432
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 2 cut(s) 414, 716
Cac8I GCNNGC 2 cut(s) 356, 474
CfoI GCGC 2 cut(s) 521, 611
Cfr13I GGNCC 2 cut(s) 475, 592
Cfr42I CCGCGG 1 cut(s) 430
CseI GACGC 6 cut(s) 41, 268, 472, 548, 569, 610
Csp6I GTAC 3 cut(s) 286, 397, 424
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CviAII CATG 3 cut(s) 289, 355, 421
CviQI GTAC 3 cut(s) 286, 397, 424
DinI GGCGCC 1 cut(s) 610
DpnI GATC 4 cut(s) 264, 516, 617, 671
DpnII GATC 4 cut(s) 262, 514, 615, 669
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 3 cut(s) 179, 188, 365
EarI CTCTTC 3 cut(s) 179, 188, 365
EciI GGCGGA 2 cut(s) 45, 355
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 683
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 588
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 592
Eco53kI GAGCTC 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 3 cut(s) 407, 594, 640
EcoT14I CCWWGG 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 588
EgeI GGCGCC 1 cut(s) 610
EheI GGCGCC 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 683
FaeI CATG 3 cut(s) 292, 358, 424
FaiI YATR 4 cut(s) 290, 356, 422, 677
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 288, 354, 420
Fnu4HI GCNGC 8 cut(s) 50, 59, 160, 163, 166, 169, 430, 543
FokI GGATG 3 cut(s) 215, 335, 419
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 8 cut(s) 50, 59, 160, 163, 166, 169, 430, 543
GlaI GCGC 2 cut(s) 520, 610
GluI GCNGC 8 cut(s) 50, 59, 160, 163, 166, 169, 430, 543
GsaI CCCAGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 6 cut(s) 20, 49, 332, 449, 476, 536
HapII CCGG 3 cut(s) 459, 577, 589
HgaI GACGC 6 cut(s) 41, 268, 472, 548, 569, 610
HhaI GCGC 2 cut(s) 521, 611
Hin1I GRCGYC 6 cut(s) 5, 116, 279, 540, 603, 609
Hin1II CATG 3 cut(s) 292, 358, 424
Hin6I GCGC 2 cut(s) 519, 609
HinP1I GCGC 2 cut(s) 519, 609
HinfI GANTC 3 cut(s) 390, 404, 635
HpaII CCGG 3 cut(s) 459, 577, 589
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 1 cut(s) 389
Hpy188III TCNNGA 1 cut(s) 625
Hpy8I GTNNAC 1 cut(s) 414
Hpy99I CGWCG 9 cut(s) 19, 118, 121, 218, 500, 515, 542, 563, 608
HpyAV CCTTC 3 cut(s) 160, 199, 209
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 2 cut(s) 116, 603
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 58, 165, 168, 506, 542
HpySE526I ACGT 2 cut(s) 116, 603
Hsp92I GRCGYC 6 cut(s) 5, 116, 279, 540, 603, 609
Hsp92II CATG 3 cut(s) 292, 358, 424
HspAI GCGC 2 cut(s) 519, 609
KasI GGCGCC 1 cut(s) 608
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 4 cut(s) 262, 514, 615, 669
LguI GCTCTTC 1 cut(s) 365
LmnI GCTCC 1 cut(s) 591
Lsp1109I GCAGC 4 cut(s) 146, 149, 152, 155
LweI GCATC 2 cut(s) 303, 441
MaeII ACGT 2 cut(s) 116, 603
MaeIII GTNAC 1 cut(s) 599
MalI GATC 4 cut(s) 264, 516, 617, 671
MboI GATC 4 cut(s) 262, 514, 615, 669
MboII GAAGA 5 cut(s) 120, 166, 175, 352, 457
MflI RGATCY 1 cut(s) 615
MhlI GDGCHC 1 cut(s) 588
Mly113I GGCGCC 1 cut(s) 609
MlyI GAGTC 2 cut(s) 413, 629
MmeI TCCRAC 2 cut(s) 292, 367
MseI TTAA 1 cut(s) 551
MslI CAYNNNNRTG 2 cut(s) 353, 419
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 3 cut(s) 459, 577, 589
MspR9I CCNGG 6 cut(s) 409, 459, 578, 590, 596, 642
MvaI CCWGG 3 cut(s) 409, 596, 642
MvnI CGCG 5 cut(s) 52, 429, 519, 558, 621
MwoI GCNNNNNNNGC 6 cut(s) 55, 58, 165, 168, 506, 542
NarI GGCGCC 1 cut(s) 609
NciI CCSGG 3 cut(s) 459, 578, 590
NdeII GATC 4 cut(s) 262, 514, 615, 669
NlaIII CATG 3 cut(s) 292, 358, 424
NlaIV GGNNCC 2 cut(s) 593, 610
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 599
NspI RCATGY 1 cut(s) 358
PaeI GCATGC 1 cut(s) 358
PceI AGGCCT 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 365
PcsI WCGNNNNNNNCGW 3 cut(s) 201, 210, 579
PfeI GAWTC 1 cut(s) 390
PflFI GACNNNGTC 1 cut(s) 578
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 8 cut(s) 51, 60, 161, 164, 167, 170, 431, 544
Ple19I CGATCG 2 cut(s) 517, 672
PleI GAGTC 2 cut(s) 412, 629
PluTI GGCGCC 1 cut(s) 612
PpsI GAGTC 2 cut(s) 412, 629
PpuMI RGGWCCY 1 cut(s) 592
PsiI TTATAA 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 3 cut(s) 407, 594, 640
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 3 cut(s) 407, 594, 640
PspN4I GGNNCC 2 cut(s) 593, 610
PspPI GGNCC 2 cut(s) 475, 592
PspPPI RGGWCCY 1 cut(s) 592
PsuI RGATCY 1 cut(s) 615
PsyI GACNNNGTC 1 cut(s) 578
PvuI CGATCG 2 cut(s) 517, 672
RsaI GTAC 3 cut(s) 287, 398, 425
RsaNI GTAC 3 cut(s) 286, 397, 424
RseI CAYNNNNRTG 2 cut(s) 353, 419
SacI GAGCTC 1 cut(s) 588
SacII CCGCGG 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 8 cut(s) 50, 59, 160, 163, 166, 169, 430, 543
Sau3AI GATC 4 cut(s) 262, 514, 615, 669
Sau96I GGNCC 2 cut(s) 475, 592
SchI GAGTC 2 cut(s) 413, 629
ScrFI CCNGG 6 cut(s) 409, 459, 578, 590, 596, 642
SduI GDGCHC 1 cut(s) 588
SetI ASST 7 cut(s) 119, 387, 413, 495, 588, 606, 654
SfaNI GCATC 2 cut(s) 303, 441
SfoI GGCGCC 1 cut(s) 610
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 1 cut(s) 592
SmiMI CAYNNNNRTG 2 cut(s) 353, 419
SphI GCATGC 1 cut(s) 358
SseBI AGGCCT 1 cut(s) 449
SspDI GGCGCC 1 cut(s) 608
SstI GAGCTC 1 cut(s) 588
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 6 cut(s) 407, 457, 576, 588, 594, 640
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 2 cut(s) 119, 606
TaqI TCGA 4 cut(s) 261, 513, 582, 633
TatI WGTACW 1 cut(s) 285
TauI GCSGC 4 cut(s) 52, 61, 432, 545
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 2 cut(s) 421, 716
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 4 cut(s) 159, 162, 165, 168
Tsp45I GTSAC 1 cut(s) 599
TspGWI ACGGA 3 cut(s) 51, 442, 646
TspRI CASTG 2 cut(s) 421, 716
Tth111I GACNNNGTC 1 cut(s) 578
Van91I CCANNNNNTGG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 592
XceI RCATGY 1 cut(s) 358
ZraI GACGTC 2 cut(s) 117, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.