AT2G02730

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003884
Physical Location & Seq
Reverse (-)
764547 .. 767500
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02730.1

Sequence Viewer

Length: 831 bp
ATGGCTATGCAATCTGGTATTGGGTTATCGAAGATTTTGATTCTAGCTGGAGCAGGTTATACTAGTACGATTCTGGTTAAGAATGGGAAGATGGCAGATATTTTGGGTGAGCTTCAGGCTTTGGTTAAGCGATTTGAGAAATCTGGAGATCATGTAGATGATGATTCTGATGCCATGACTACTCAGATGCAACGATTAGCAATGGAGGTTCGGCAATTGGCTTCGTCGCGGCAGATAACTGTTATGAATGGAGCTCAGGGAGCTGATTTTACACCGTTTATTGTCCCGGCAGCGACATTGGGAGCATTAGGCTATGGCTATATGTGGTTCAAGGGAATTTCATTCTCTGATATCATGTGTGTAACGAAGCGGAACATGGAAAATGCAGTGTCGAACTTGACCAAGCATTTGGATACCGTTTCAGAAGCTATTTTGAATGCTAAGAAGCACCTGAGCCAGCGGCTTCAGAAGGTGGACGATAAGCTAGACTTGCAGAAAGATCTCTTAAAGGGAGTCCAGGATAATGTGGGTTTGGCTCTTGAGGATCTTGCTAACATTGGAGATGATTTTGACGCAATGCATAGCATCTTTGGTGGTATGGGTGGGAAATTAGATAGCATTGAGTACAAGCAGAATATTGCGAACATGGGTTTGATATATCTGTGCGACTCTTTGGGTGGAGAAAATCACAAGATGCCGGATATATTGATGCAGGAGAAGCTTCGGCTTTCAGGGAAGTCAAACACATGTATAGTACTTACAACCGAAGAAACTTCAAGCTCAGAGGGTTTAAAAGAAAGCGATAAGATACAGCTACTAGATGACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

276

Amino Acids

30.06

Weight (kDa)

5.08

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 91 - 211 4.1e-44 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 44
AccII CGCG 1 cut(s) 229
AciI CCGC 3 cut(s) 229, 370, 460
AclWI GGATC 1 cut(s) 552
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 2 cut(s) 98, 449
AfaI GTAC 3 cut(s) 67, 626, 756
AflIII ACRYGT 1 cut(s) 746
AgsI TTSAA 3 cut(s) 331, 436, 777
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 516
AluBI AGCT 9 cut(s) 47, 112, 254, 263, 428, 484, 721, 780, 814
AluI AGCT 9 cut(s) 47, 112, 254, 263, 428, 484, 721, 780, 814
Alw21I GWGCWC 1 cut(s) 256
AlwI GGATC 1 cut(s) 552
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 336
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 119
BanII GRGCYC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 302
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 518
BciVI GTATCC 1 cut(s) 406
BcnI CCSGG 1 cut(s) 287
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 4 cut(s) 44, 63, 485, 818
BfuAI ACCTGC 1 cut(s) 44
BfuI GTATCC 1 cut(s) 406
BglII AGATCT 1 cut(s) 499
BisI GCNGC 3 cut(s) 230, 291, 461
BlsI GCNGC 3 cut(s) 231, 292, 462
BmcAI AGTACT 1 cut(s) 756
Bme1390I CCNGG 2 cut(s) 287, 518
BmrFI CCNGG 2 cut(s) 287, 518
BmsI GCATC 5 cut(s) 160, 177, 594, 684, 699
BpmI CTGGAG 2 cut(s) 69, 165
Bpu10I CCTNAGC 2 cut(s) 255, 452
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bse3DI GCAATG 2 cut(s) 207, 582
BseBI CCWGG 1 cut(s) 518
BseMI GCAATG 2 cut(s) 207, 582
BseMII CTCAG 4 cut(s) 197, 269, 443, 795
BseXI GCAGC 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 287, 698
BslFI GGGAC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 148, 499, 544
BspACI CCGC 3 cut(s) 229, 370, 460
BspCNI CTCAG 4 cut(s) 196, 268, 444, 794
BspFNI CGCG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 44
BspPI GGATC 1 cut(s) 552
BsrDI GCAATG 2 cut(s) 207, 582
BssMI GATC 3 cut(s) 148, 499, 544
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 3 cut(s) 241, 276, 418
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 5 cut(s) 183, 255, 441, 452, 781
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 3 cut(s) 151, 502, 547
BstMBI GATC 3 cut(s) 148, 499, 544
BstMWI GCNNNNNNNGC 3 cut(s) 260, 490, 718
BstNI CCWGG 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 750
BstSCI CCNGG 2 cut(s) 285, 516
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 302
BstX2I RGATCY 2 cut(s) 499, 544
BstXI CCANNNNNNTGG 1 cut(s) 409
BstYI RGATCY 2 cut(s) 499, 544
BsuI GTATCC 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 458
CseI GACGC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 66, 625, 755
CviAII CATG 6 cut(s) 152, 175, 355, 376, 646, 747
CviQI GTAC 3 cut(s) 66, 625, 755
DdeI CTNAG 5 cut(s) 183, 255, 441, 452, 781
DpnI GATC 3 cut(s) 150, 501, 546
DpnII GATC 3 cut(s) 148, 499, 544
DraI TTTAAA 1 cut(s) 792
Ecl136II GAGCTC 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 254
Eco57I CTGAAG 2 cut(s) 98, 449
EcoICRI GAGCTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 516
EcoRV GATATC 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 6 cut(s) 155, 178, 358, 379, 649, 750
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 1 cut(s) 269
FatI CATG 6 cut(s) 151, 174, 354, 375, 645, 746
Fnu4HI GCNGC 3 cut(s) 230, 291, 461
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 3 cut(s) 230, 291, 461
FspBI CTAG 4 cut(s) 44, 63, 485, 818
GluI GCNGC 3 cut(s) 230, 291, 461
GsuI CTGGAG 2 cut(s) 69, 165
HapII CCGG 2 cut(s) 287, 698
HgaI GACGC 1 cut(s) 581
Hin1II CATG 6 cut(s) 155, 178, 358, 379, 649, 750
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 5 cut(s) 40, 70, 164, 513, 668
HpaII CCGG 2 cut(s) 287, 698
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 6 cut(s) 169, 186, 349, 424, 468, 784
Hpy188III TCNNGA 2 cut(s) 144, 539
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 3 cut(s) 241, 276, 418
HpyCH4V TGCA 6 cut(s) 10, 190, 386, 493, 580, 712
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 490, 718
HpyF3I CTNAG 5 cut(s) 183, 255, 441, 452, 781
Hsp92II CATG 6 cut(s) 155, 178, 358, 379, 649, 750
Kzo9I GATC 3 cut(s) 148, 499, 544
LmnI GCTCC 4 cut(s) 50, 251, 260, 302
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 5 cut(s) 160, 177, 594, 684, 699
MaeI CTAG 4 cut(s) 44, 63, 485, 818
MaeIII GTNAC 1 cut(s) 361
MalI GATC 3 cut(s) 150, 501, 546
MboI GATC 3 cut(s) 148, 499, 544
MboII GAAGA 3 cut(s) 43, 100, 779
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 2 cut(s) 499, 544
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 3 cut(s) 215, 336, 608
MlyI GAGTC 2 cut(s) 522, 662
MnlI CCTC 3 cut(s) 199, 535, 778
Mph1103I ATGCAT 1 cut(s) 582
MseI TTAA 4 cut(s) 78, 126, 506, 791
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 460
MspI CCGG 2 cut(s) 287, 698
MspR9I CCNGG 2 cut(s) 287, 518
MunI CAATTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 3 cut(s) 260, 490, 718
NciI CCSGG 1 cut(s) 287
NdeII GATC 3 cut(s) 148, 499, 544
NlaIII CATG 6 cut(s) 155, 178, 358, 379, 649, 750
NsiI ATGCAT 1 cut(s) 582
NspI RCATGY 1 cut(s) 750
PciI ACATGT 1 cut(s) 746
PctI GAATGC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 40, 70, 164
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 3 cut(s) 231, 292, 462
PleI GAGTC 2 cut(s) 521, 662
PpsI GAGTC 2 cut(s) 521, 662
PscI ACATGT 1 cut(s) 746
Psp124BI GAGCTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PsuI RGATCY 2 cut(s) 499, 544
RsaI GTAC 3 cut(s) 67, 626, 756
RsaNI GTAC 3 cut(s) 66, 625, 755
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 256
SaqAI TTAA 4 cut(s) 78, 126, 506, 791
SatI GCNGC 3 cut(s) 230, 291, 461
Sau3AI GATC 3 cut(s) 148, 499, 544
ScaI AGTACT 1 cut(s) 756
SchI GAGTC 2 cut(s) 522, 662
ScrFI CCNGG 2 cut(s) 287, 518
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 5 cut(s) 160, 177, 594, 684, 699
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 3 cut(s) 215, 336, 608
SsiI CCGC 3 cut(s) 229, 370, 460
SspI AATATT 1 cut(s) 637
SspMI CTAG 4 cut(s) 44, 63, 485, 818
SstI GAGCTC 1 cut(s) 256
StyD4I CCNGG 2 cut(s) 285, 516
TaaI ACNGT 3 cut(s) 241, 276, 418
TaqI TCGA 2 cut(s) 29, 392
TasI AATT 3 cut(s) 215, 336, 608
TatI WGTACW 2 cut(s) 624, 754
TauI GCSGC 2 cut(s) 232, 463
TfiI GAWTC 3 cut(s) 40, 70, 164
Tru1I TTAA 4 cut(s) 78, 126, 506, 791
Tru9I TTAA 4 cut(s) 78, 126, 506, 791
TscAI CASTG 1 cut(s) 393
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 260, 330
TspRI CASTG 1 cut(s) 393
XapI RAATTY 1 cut(s) 336
XceI RCATGY 1 cut(s) 750
XspI CTAG 4 cut(s) 44, 63, 485, 818
ZrmI AGTACT 1 cut(s) 756
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.