Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003884

Physical Location & Seq

Genomic Coordinates Forward (+)

4358378 .. 4361839

Gene Structure 3462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTATGCAGAGCGGAATAGGGTTTTCCAAGATCCTGATCTTAGCAGGGGCAGGGTATACAAGCACCATCCTGCTTAAGAACGGTAAATTATCCGACTTGCTCGGTGAACTTCAGTCTTTGTTGAATGGATCCGGGGAACACACAGAAGGTGACTATGATTCCCTGACAGCACAGATTAGCCGACTAACAGCTGAGATCAGGCAAATTGGCTCGTCGCGGGGCGGCAGCACGGTTTTCGTGAATGGGAACGGTGGCCAAATTGGTAATATGACATCTCTAATAATGCCAGCAGCTACCTTGGGAGCAGTGGGTTATGGTTACATGTGGTGGAAGGGTCTAAAACTCTCAGATATTATGTATGTGACAAAGCGTGGTATGGCTACTGCTGTTGAGAACTTGACTAAAAATCTGGATAACGTGAAAGAGGCCGTTGCTAAAGCAAAGAAGCACCTGACGCAGAGAATCCAGCATGTTGATGACAAAATGGCGGAGCAAAATGAGCTCTCAAGGTCAATTAAGGAAGATGTTGCTGGAGTGCAACATTCTCTCACTGATATTGACTATGACTTGAGTAGATTGCAGAGCATGGTTTCTGGTTTGGATCATAAGATAGGTTCTCTTGAACACAAGCAGGATCTCGCAAACCTTGGTGTTATCTACCTGGTCAATTTTGTGGATGGAAAAAAAGTTGAAATGCCTAAAACTCTGCAGAAGCAACTTGAAAACTCTGGGAAGTCACGTGGTCGTTTACTCTCATATTCAGATACTTCAGGCTTGATGGGTCTCAAAGAAATTGCGGACTCTCTGTCTGAAACTTTAAATCCATCAACTGATGCTATTGTGAAATATGATATTGAAATGACGGGAGAGTATCGGAAGAACAACCTGATAAGGTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

302

Amino Acids

32.84

Weight (kDa)

6.62

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27000 AT2G02730 AT2G02730 AT2G02730
fragaria_vesca	FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_4g31870
malus_domestica	MD05G1007200.v1.1 MD13G1078200.v1.1 MD16G1077900.v1.1
prunus_persica	Prupe.1G268900_v2.0.a1
pyrus_communis	pycom13g06780 pycom13g06790 pycom16g06730
rosa_chinensis	RchiOBHm_Chr4g0440531
rosa_laevigata	RLG00000006171
rosa_multiflora	Rmu_sc0016635.1_g000001 Rmu_sc0037701.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381360
rosa_rugosa	Rorug04G0326500 Rorug04G0326600
rosa_samantha	Rh1AG290600 Rh2AG297000 Rh4AG378200 Rh4BG390800 Rh4CG405500 Rh4DG384500
rosa_wichuraiana	Rw0G013060 Rw2G026030 Rw4G032370 Rw4G032470 Rw7G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	220
AciI	CCGC	5 cut(s)	15, 220, 225, 491, 800
AclWI	GGATC	5 cut(s)	28, 126, 139, 612, 645
AcoI	YGGCCR	1 cut(s)	256
AcuI	CTGAAG	2 cut(s)	98, 756
AcvI	CACGTG	1 cut(s)	743
AflII	CTTAAG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	6 cut(s)	127, 626, 695, 725, 860, 902
AhdI	GACNNNNNGTC	1 cut(s)	808
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	3 cut(s)	194, 296, 505
AluI	AGCT	3 cut(s)	194, 296, 505
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	791
AlwI	GGATC	5 cut(s)	28, 126, 139, 612, 645
AoxI	GGCC	2 cut(s)	256, 429
ApeKI	GCWGC	2 cut(s)	228, 293
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	119, 164
BalI	TGGCCA	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	507
BbrPI	CACGTG	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	240, 305
BccI	CCATC	4 cut(s)	77, 674, 775, 835
BceAI	ACGGC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	665
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	710
BfrI	CTTAAG	1 cut(s)	77
BisI	GCNGC	3 cut(s)	226, 229, 294
BlsI	GCNGC	3 cut(s)	227, 230, 295
Bme1390I	CCNGG	2 cut(s)	136, 665
BmeRI	GACNNNNNGTC	1 cut(s)	808
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	136, 665
BmsI	GCATC	1 cut(s)	826
BpmI	CTGGAG	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	493, 592
BpuMI	CCSGG	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	743
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	3 cut(s)	135, 300, 649
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	3 cut(s)	135, 300, 649
BseGI	GGATG	2 cut(s)	69, 685
BseJI	GATNNNNATC	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	186, 363
BseXI	GCAGC	2 cut(s)	240, 305
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	258, 431
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	791
BsnI	GGCC	2 cut(s)	258, 431
Bso31I	GGTCTC	1 cut(s)	791
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	6 cut(s)	33, 39, 131, 198, 604, 637
BspACI	CCGC	5 cut(s)	15, 220, 225, 491, 800
BspANI	GGCC	2 cut(s)	258, 431
BspCNI	CTCAG	2 cut(s)	187, 362
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	714
BspPI	GGATC	5 cut(s)	28, 126, 139, 612, 645
BspTI	CTTAAG	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	791
BsrBI	CCGCTC	1 cut(s)	15
BssECI	CCNNGG	3 cut(s)	135, 300, 649
BssMI	GATC	6 cut(s)	33, 39, 131, 198, 604, 637
BssNAI	GTATAC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	300, 649
Bst1107I	GTATAC	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	86, 235, 254
BstAFI	CTTAAG	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	43, 195, 349
BstF5I	GGATG	2 cut(s)	69, 685
BstFNI	CGCG	1 cut(s)	220
BstKTI	GATC	6 cut(s)	36, 42, 134, 201, 607, 640
BstMAI	GTCTC	1 cut(s)	791
BstMBI	GATC	6 cut(s)	33, 39, 131, 198, 604, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 502
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	2 cut(s)	328, 476
BstSCI	CCNGG	2 cut(s)	134, 663
BstSFI	CTRYAG	1 cut(s)	710
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	240, 305
BstX2I	RGATCY	3 cut(s)	33, 131, 637
BstYI	RGATCY	3 cut(s)	33, 131, 637
BstZ17I	GTATAC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	258, 431
BtsCI	GGATG	2 cut(s)	69, 685
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 552
Cac8I	GCNNGC	1 cut(s)	291
CseI	GACGC	1 cut(s)	466
CsiI	ACCWGGT	1 cut(s)	663
CviAII	CATG	3 cut(s)	325, 473, 589
DdeI	CTNAG	3 cut(s)	43, 195, 349
DpnI	GATC	6 cut(s)	35, 41, 133, 200, 606, 639
DpnII	GATC	6 cut(s)	33, 39, 131, 198, 604, 637
DraI	TTTAAA	1 cut(s)	822
DriI	GACNNNNNGTC	1 cut(s)	808
EaeI	YGGCCR	1 cut(s)	256
Eam1105I	GACNNNNNGTC	1 cut(s)	808
EciI	GGCGGA	1 cut(s)	506
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	2 cut(s)	300, 649
Eco24I	GRGCYC	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	791
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	98, 756
Eco72I	CACGTG	1 cut(s)	743
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	2 cut(s)	300, 649
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	300, 649
FaeI	CATG	3 cut(s)	328, 476, 592
FatI	CATG	3 cut(s)	324, 472, 588
FauI	CCCGC	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	226, 229, 294
FokI	GGATG	2 cut(s)	56, 692
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	3 cut(s)	226, 229, 294
GluI	GCNGC	3 cut(s)	226, 229, 294
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	258, 431
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	328, 476, 592
HinfI	GANTC	3 cut(s)	161, 465, 803
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	119, 164
Hpy166II	GTNNAC	3 cut(s)	60, 110, 752
Hpy188I	TCNGA	5 cut(s)	97, 352, 766, 814, 879
Hpy188III	TCNNGA	4 cut(s)	37, 241, 413, 623
Hpy8I	GTNNAC	3 cut(s)	60, 110, 752
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	143, 328
HpyCH4III	ACNGT	3 cut(s)	86, 235, 254
HpyCH4IV	ACGT	2 cut(s)	420, 742
HpyCH4V	TGCA	4 cut(s)	10, 541, 583, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 502
HpyF3I	CTNAG	3 cut(s)	43, 195, 349
HpySE526I	ACGT	2 cut(s)	420, 742
Hsp92II	CATG	3 cut(s)	328, 476, 592
Kzo9I	GATC	6 cut(s)	33, 39, 131, 198, 604, 637
LmnI	GCTCC	2 cut(s)	305, 493
Lsp1109I	GCAGC	2 cut(s)	240, 305
LweI	GCATC	1 cut(s)	826
MabI	ACCWGGT	1 cut(s)	663
MaeII	ACGT	2 cut(s)	420, 742
MaeIII	GTNAC	4 cut(s)	152, 320, 364, 738
MalI	GATC	6 cut(s)	35, 41, 133, 200, 606, 639
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	6 cut(s)	33, 39, 131, 198, 604, 637
MboII	GAAGA	2 cut(s)	536, 892
MflI	RGATCY	3 cut(s)	33, 131, 637
MhlI	GDGCHC	1 cut(s)	507
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	6 cut(s)	89, 207, 261, 516, 670, 795
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	1 cut(s)	421
Mox20I	TGGCCA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	3 cut(s)	78, 519, 821
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	136, 665
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	457, 502
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	6 cut(s)	33, 39, 131, 198, 604, 637
NlaIII	CATG	3 cut(s)	328, 476, 592
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	3 cut(s)	152, 364, 738
NspI	RCATGY	2 cut(s)	328, 476
PciI	ACATGT	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	161, 465
PkrI	GCNGC	3 cut(s)	227, 230, 295
PleI	GAGTC	1 cut(s)	797
PmaCI	CACGTG	1 cut(s)	743
PmlI	CACGTG	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	797
Ppu21I	YACGTR	1 cut(s)	743
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	663
PspCI	CACGTG	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	714
PsuI	RGATCY	3 cut(s)	33, 131, 637
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	78, 519, 821
SatI	GCNGC	3 cut(s)	226, 229, 294
Sau3AI	GATC	6 cut(s)	33, 39, 131, 198, 604, 637
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	2 cut(s)	136, 665
SduI	GDGCHC	1 cut(s)	507
SexAI	ACCWGGT	1 cut(s)	663
SfaNI	GCATC	1 cut(s)	826
SfcI	CTRYAG	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	3 cut(s)	77, 508, 571
SmoI	CTYRAG	3 cut(s)	77, 508, 571
Sse9I	AATT	6 cut(s)	89, 207, 261, 516, 670, 795
SsiI	CCGC	5 cut(s)	15, 220, 225, 491, 800
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	134, 663
StyI	CCWWGG	2 cut(s)	300, 649
TaaI	ACNGT	3 cut(s)	86, 235, 254
TaiI	ACGT	2 cut(s)	423, 745
TasI	AATT	6 cut(s)	89, 207, 261, 516, 670, 795
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	161, 465
Tru1I	TTAA	3 cut(s)	78, 519, 821
Tru9I	TTAA	3 cut(s)	78, 519, 821
TscAI	CASTG	2 cut(s)	315, 559
TseFI	GTSAC	3 cut(s)	152, 364, 738
TseI	GCWGC	2 cut(s)	228, 293
Tsp45I	GTSAC	3 cut(s)	152, 364, 738
TspRI	CASTG	2 cut(s)	315, 559
Vha464I	CTTAAG	1 cut(s)	77
XceI	RCATGY	2 cut(s)	328, 476
XmiI	GTMKAC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.