Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003884

Physical Location & Seq

Genomic Coordinates Forward (+)

4495382 .. 4497545

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06780.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTATGCAGAGCGGAATAGGGGTTTCCAAGATCCTGATCTTAGCTGGGGCAGGGTATACTGGCACCATCCTTCTTAAGAACGGCAAATTATCCGAGCTGCTCGGTGAACTTCAGTCATTGTTAAATGGATCCGGGGAACACGCAGAAGGTGACTATGATTCCCTCACAGCACAGATTAGCCGAATGACAGCTGAGATCAGGCAAATTGGCTCTTCGCGTGGCGGGGGAACGGTTTTTGTGAATGGGAACGGTAGCCAAATTGGTAATATGACATCACTAATAATGCCAGCAGCTACCTTGGGAGCAGTGGGTTATGGATACATGTGGTGGAAGGGTCTAAAATTCTCAGATATGATGTATGTGACAAAGCGTGGTATGGCTACTGCTGTTGAGAACTTGACAAAAAATCTGGATAACGTGAAAGAGGCTGTTGCTAAAGCAAAGAAGCACCTGACGCAGAGGATTCAGCATGTGGATGACAAAATGGCGGAGCAAAATGAGCTTTCAAGGTCAATTAAGGAAGATGTTGCTGGAGTGCAACATTCTCTCACTGATATTGACTATGACTTGAGTAGATTGCAGAGCATGGTTTCTGGCTTGGATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

204

Amino Acids

21.86

Weight (kDa)

6.91

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27000 AT2G02730 AT2G02730 AT2G02730
fragaria_vesca	FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_4g31870
malus_domestica	MD05G1007200.v1.1 MD13G1078200.v1.1 MD16G1077900.v1.1
prunus_persica	Prupe.1G268900_v2.0.a1
pyrus_communis	pycom13g06780 pycom13g06790 pycom16g06730
rosa_chinensis	RchiOBHm_Chr4g0440531
rosa_laevigata	RLG00000006171
rosa_multiflora	Rmu_sc0016635.1_g000001 Rmu_sc0037701.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381360
rosa_rugosa	Rorug04G0326500 Rorug04G0326600
rosa_samantha	Rh1AG290600 Rh2AG297000 Rh4AG378200 Rh4BG390800 Rh4CG405500 Rh4DG384500
rosa_wichuraiana	Rw0G013060 Rw2G026030 Rw4G032370 Rw4G032470 Rw7G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	220
AciI	CCGC	3 cut(s)	15, 225, 491
AclWI	GGATC	3 cut(s)	28, 126, 139
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	98
AflII	CTTAAG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	510
AluBI	AGCT	5 cut(s)	47, 100, 194, 296, 505
AluI	AGCT	5 cut(s)	47, 100, 194, 296, 505
AlwI	GGATC	3 cut(s)	28, 126, 139
ApeKI	GCWGC	2 cut(s)	100, 293
ApoI	RAATTY	1 cut(s)	344
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	119, 164
BamHI	GGATCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	87, 305
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	100
BciVI	GTATCC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	136
BfrI	CTTAAG	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	2 cut(s)	101, 294
BlsI	GCNGC	2 cut(s)	102, 295
Bme1390I	CCNGG	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	67, 133
BmrFI	CCNGG	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	136
Bsa29I	ATCGAT	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	135, 300
Bse1I	ACTGG	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	607
BseDI	CCNNGG	2 cut(s)	135, 300
BseGI	GGATG	2 cut(s)	69, 484
BseJI	GATNNNNATC	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	186, 363
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	87, 305
BseYI	CCCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	33, 39, 131, 198, 604
BspACI	CCGC	3 cut(s)	15, 225, 491
BspCNI	CTCAG	2 cut(s)	187, 362
BspDI	ATCGAT	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	67, 133
BspPI	GGATC	3 cut(s)	28, 126, 139
BspQI	GCTCTTC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	135, 300
BssMI	GATC	5 cut(s)	33, 39, 131, 198, 604
BssNAI	GTATAC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	235, 254
Bst6I	CTCTTC	1 cut(s)	220
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	43, 195, 349
BstF5I	GGATG	2 cut(s)	69, 484
BstFNI	CGCG	1 cut(s)	220
BstKTI	GATC	5 cut(s)	36, 42, 134, 201, 607
BstMBI	GATC	5 cut(s)	33, 39, 131, 198, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 502
BstNSI	RCATGY	2 cut(s)	328, 476
BstSCI	CCNGG	1 cut(s)	134
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	87, 305
BstX2I	RGATCY	2 cut(s)	33, 131
BstYI	RGATCY	2 cut(s)	33, 131
BstZ17I	GTATAC	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	314
BsuTUI	ATCGAT	1 cut(s)	607
BtsCI	GGATG	2 cut(s)	69, 484
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 552
Cac8I	GCNNGC	1 cut(s)	291
ClaI	ATCGAT	1 cut(s)	607
CseI	GACGC	1 cut(s)	466
CviAII	CATG	3 cut(s)	325, 473, 589
DdeI	CTNAG	3 cut(s)	43, 195, 349
DpnI	GATC	5 cut(s)	35, 41, 133, 200, 606
DpnII	GATC	5 cut(s)	33, 39, 131, 198, 604
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	328, 476, 592
FatI	CATG	3 cut(s)	324, 472, 588
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	101, 294
FokI	GGATG	2 cut(s)	56, 491
Fsp4HI	GCNGC	2 cut(s)	101, 294
GluI	GCNGC	2 cut(s)	101, 294
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	555
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	328, 476, 592
HinfI	GANTC	2 cut(s)	161, 466
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	119, 164
Hpy166II	GTNNAC	2 cut(s)	60, 110
Hpy188I	TCNGA	2 cut(s)	97, 352
Hpy188III	TCNNGA	2 cut(s)	37, 413
Hpy8I	GTNNAC	2 cut(s)	60, 110
HpyAV	CCTTC	3 cut(s)	83, 143, 328
HpyCH4III	ACNGT	2 cut(s)	235, 254
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	10, 541, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 502
HpyF3I	CTNAG	3 cut(s)	43, 195, 349
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	328, 476, 592
Kzo9I	GATC	5 cut(s)	33, 39, 131, 198, 604
LguI	GCTCTTC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	305, 493
Lsp1109I	GCAGC	2 cut(s)	87, 305
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	152, 364
MalI	GATC	5 cut(s)	35, 41, 133, 200, 606
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	5 cut(s)	33, 39, 131, 198, 604
MboII	GAAGA	2 cut(s)	207, 536
MflI	RGATCY	2 cut(s)	33, 131
MluCI	AATT	5 cut(s)	89, 207, 261, 344, 516
MnlI	CCTC	3 cut(s)	176, 421, 456
MseI	TTAA	3 cut(s)	78, 125, 519
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	457, 502
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	5 cut(s)	33, 39, 131, 198, 604
NlaIII	CATG	3 cut(s)	328, 476, 592
NlaIV	GGNNCC	2 cut(s)	67, 133
NmuCI	GTSAC	2 cut(s)	152, 364
NspI	RCATGY	2 cut(s)	328, 476
PciI	ACATGT	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	161, 466
PkrI	GCNGC	2 cut(s)	102, 295
PscI	ACATGT	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	67, 133
PsuI	RGATCY	2 cut(s)	33, 131
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	477
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	78, 125, 519
SatI	GCNGC	2 cut(s)	101, 294
Sau3AI	GATC	5 cut(s)	33, 39, 131, 198, 604
ScrFI	CCNGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	2 cut(s)	77, 571
SmoI	CTYRAG	2 cut(s)	77, 571
Sse9I	AATT	5 cut(s)	89, 207, 261, 344, 516
SsiI	CCGC	3 cut(s)	15, 225, 491
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	235, 254
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	607
TasI	AATT	5 cut(s)	89, 207, 261, 344, 516
TfiI	GAWTC	2 cut(s)	161, 466
Tru1I	TTAA	3 cut(s)	78, 125, 519
Tru9I	TTAA	3 cut(s)	78, 125, 519
TscAI	CASTG	2 cut(s)	315, 559
TseFI	GTSAC	2 cut(s)	152, 364
TseI	GCWGC	2 cut(s)	100, 293
Tsp45I	GTSAC	2 cut(s)	152, 364
TspRI	CASTG	2 cut(s)	315, 559
Vha464I	CTTAAG	1 cut(s)	77
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	2 cut(s)	328, 476
XmiI	GTMKAC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.