Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003884

Physical Location & Seq

Genomic Coordinates Reverse (-)

36781406 .. 36811750

Gene Structure 30345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG297000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCAAGGTTTGGTTCCAAATCGATGCAGGGCCTGTGGAGCAAACCGCAGGGTCAGTAAAGCAAATAGGGCCGCAATAAACACAAAAAAAGCTCAGAATACCATGAGGATTCCCATCGTGCAAATCTCGAACACGATCAGTAAGAGACTCAACAAGCCAAGAACCAACAGACCCAACCAAAGGACTCCGCAGGTAAACCCTCTTGATGAAGATCCTGTACAGAACATGAATTGCATGGATTTCGCAAATATGGGTGTTGCTTACCTTTGCAACTTTGTTGGTGGGAAAAAAGTTGAAATGCCTGGAGCTCTGCAGAAGCAACTTAAAAACTCTGATAATGCACGGGGTGGCCGATTACTCTCATATTCAGAACCAAGCATAATGGAAGTGAAAAGACACCAATGCAGCCATAAGTATTACAACATGGAATCTCCATCTTATGGAAAAATCAAAAAGAGCAATCAAGTAGTCTTCAAAGAGAACACCTCAAAAAGACCCCCACCCTTCTTGGATGGATGGTTAATCCCTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

178

Amino Acids

20.12

Weight (kDa)

10.22

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27000 AT2G02730 AT2G02730 AT2G02730
fragaria_vesca	FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_4g31870
malus_domestica	MD05G1007200.v1.1 MD13G1078200.v1.1 MD16G1077900.v1.1
prunus_persica	Prupe.1G268900_v2.0.a1
pyrus_communis	pycom13g06780 pycom13g06790 pycom16g06730
rosa_chinensis	RchiOBHm_Chr4g0440531
rosa_laevigata	RLG00000006171
rosa_multiflora	Rmu_sc0016635.1_g000001 Rmu_sc0037701.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381360
rosa_rugosa	Rorug04G0326500 Rorug04G0326600
rosa_samantha	Rh1AG290600 Rh2AG297000 Rh4AG378200 Rh4BG390800 Rh4CG405500 Rh4DG384500
rosa_wichuraiana	Rw0G013060 Rw2G026030 Rw4G032370 Rw4G032470 Rw7G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AccB7I	CCANNNNNTGG	1 cut(s)	440
AciI	CCGC	3 cut(s)	46, 72, 188
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	349
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	180, 440
AgsI	TTSAA	2 cut(s)	296, 475
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	92, 308
AluI	AGCT	2 cut(s)	92, 308
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	33
AoxI	GGCC	3 cut(s)	30, 69, 349
ApeKI	GCWGC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	30, 69
BanII	GRGCYC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BbsI	GAAGAC	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	4 cut(s)	122, 442, 506, 510
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	2 cut(s)	72, 406
BlsI	GCNGC	2 cut(s)	73, 407
Bme1390I	CCNGG	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	30, 69
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	463
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpmI	CTGGAG	1 cut(s)	324
Bsa29I	ATCGAT	1 cut(s)	22
BsaBI	GATNNNNATC	2 cut(s)	113, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 440
Bse8I	GATNNNNATC	2 cut(s)	113, 210
BseBI	CCWGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	22
BseGI	GGATG	2 cut(s)	517, 521
BseJI	GATNNNNATC	2 cut(s)	113, 210
BseLI	CCNNNNNNNGG	2 cut(s)	180, 440
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	417
BshFI	GGCC	3 cut(s)	32, 71, 351
BshVI	ATCGAT	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	180, 440
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	32, 71, 351
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	135, 211
BspACI	CCGC	3 cut(s)	46, 72, 188
BspANI	GGCC	3 cut(s)	32, 71, 351
BspCNI	CTCAG	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	217
BssMI	GATC	2 cut(s)	135, 211
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	517, 521
BstKTI	GATC	2 cut(s)	138, 214
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	2 cut(s)	135, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 68
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	32, 71, 351
BsuTUI	ATCGAT	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	517, 521
BveI	ACCTGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	30, 69
ClaI	ATCGAT	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	218
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	4 cut(s)	103, 226, 235, 424
CviJI	RGCY	7 cut(s)	32, 71, 92, 157, 308, 351, 408
CviKI_1	RGCY	7 cut(s)	32, 71, 92, 157, 308, 351, 408
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	137, 213
DpnII	GATC	2 cut(s)	135, 211
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	310
FaeI	CATG	4 cut(s)	106, 229, 238, 427
FaiI	YATR	9 cut(s)	104, 227, 236, 251, 364, 380, 411, 425, 441
FatI	CATG	4 cut(s)	102, 225, 234, 423
Fnu4HI	GCNGC	2 cut(s)	72, 406
FokI	GGATG	2 cut(s)	524, 528
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	72, 406
GluI	GCNGC	2 cut(s)	72, 406
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	32, 71, 351
Hin1II	CATG	4 cut(s)	106, 229, 238, 427
HinfI	GANTC	4 cut(s)	109, 147, 184, 428
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	96, 334, 370
Hpy188III	TCNNGA	2 cut(s)	127, 203
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	514
HpyCH4V	TGCA	8 cut(s)	4, 27, 121, 234, 270, 313, 341, 405
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 68
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	106, 229, 238, 427
Kzo9I	GATC	2 cut(s)	135, 211
LmnI	GCTCC	2 cut(s)	38, 305
LpnPI	CCDG	7 cut(s)	13, 34, 46, 176, 228, 288, 315
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	14
MalI	GATC	2 cut(s)	137, 213
MboI	GATC	2 cut(s)	135, 211
MboII	GAAGA	3 cut(s)	221, 463, 521
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	141, 178
MnlI	CCTC	4 cut(s)	99, 210, 496, 537
MseI	TTAA	3 cut(s)	324, 521, 535
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	38, 68
NdeII	GATC	2 cut(s)	135, 211
NlaIII	CATG	4 cut(s)	106, 229, 238, 427
NlaIV	GGNNCC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	109, 428
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	73, 407
PleI	GAGTC	2 cut(s)	141, 178
PpsI	GAGTC	2 cut(s)	141, 178
Psp124BI	GAGCTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	30, 69
PstI	CTGCAG	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	3 cut(s)	324, 521, 535
SatI	GCNGC	2 cut(s)	72, 406
Sau3AI	GATC	2 cut(s)	135, 211
Sau96I	GGNCC	2 cut(s)	30, 69
SchI	GAGTC	2 cut(s)	141, 178
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	6 cut(s)	10, 94, 195, 267, 310, 488
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	46, 72, 188
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	301
TaqI	TCGA	2 cut(s)	22, 128
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	217
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	109, 428
Tru1I	TTAA	3 cut(s)	324, 521, 535
Tru9I	TTAA	3 cut(s)	324, 521, 535
TseI	GCWGC	1 cut(s)	405
TspDTI	ATGAA	2 cut(s)	222, 242
Van91I	CCANNNNNTGG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.