Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003884

Physical Location & Seq

Genomic Coordinates Reverse (-)

27616068 .. 27620442

Gene Structure 4375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G268900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTATGCAAAGCGGAATAGGGTTTTCCAAGATCCTGATCTTAGCTGGAGCAGGGTATACTAGCACCATCCTGCTTAAGAATGGTAAATTATCTGACTTGATCGGTGAACTTCAGTCTTTGTTGAATGGAACCGGAGAACAATCAGAAGGTGACTTTGATGCGATCGCATCACAGGTGCGCCGACTGGCAGCTGAGGTCCGGCAACTTGGCTCGTCACGACAGATAACCGTCCTGAATGGGAATGGCAGCCAAATTGGTTTGACATCACTAATAATGCCAGCAGCTACCTTGGGGGCATTGGGTTATGGTTACATGTGGTGGAAGGGTCTAAAATTCTCAGATCTTATGTATGTGACGAAGCGTAGTATGACTGCTGCTGTTTCAAACTTGCATAAACATCTGGAGAGCGTGACAGAGGCTATTGCTAACACAAAGAAGCACCTGACACAGAGAGTCCAGAATTTGGACGATAAATTGCTGGAGCAGAAAGAGATCTCAAAGTCGATTCTGGAGAATGTTGGTGATACGAAAGGAAGTATTGAGGAACTTTACGTTACCGTGACTGAGTTGCAAAGCGCGCTTACTGGTTTGGATTACAAGCTAGGTTCCATTTCAGAAAAGCAGGATGTTTCAAATCTTGGTCTTTTCTACCTCGTCAACTTTGTTGAGGGAAAACAAGTTGAAATGCCTCAGCAGACGAAACTTAAACTTACTGGGAATCCACGTGGTCGTTTAGTGACATATTCAGAAACTCAGAGTCTGATGGGTCTAAAAGAAATTGCGGAGTCTTTGTCGGGAACTTTGAATAAGTCAACTGATGCTATTGTGCAAGACGATATTGAAGGTCCAGGAATGAAACCGAGAAACCTGCTGAGGTCGGTCTCAACCAAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

300

Amino Acids

32.46

Weight (kDa)

7.74

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27000 AT2G02730 AT2G02730 AT2G02730
fragaria_vesca	FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_4g31870
malus_domestica	MD05G1007200.v1.1 MD13G1078200.v1.1 MD16G1077900.v1.1
prunus_persica	Prupe.1G268900_v2.0.a1
pyrus_communis	pycom13g06780 pycom13g06790 pycom16g06730
rosa_chinensis	RchiOBHm_Chr4g0440531
rosa_laevigata	RLG00000006171
rosa_multiflora	Rmu_sc0016635.1_g000001 Rmu_sc0037701.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381360
rosa_rugosa	Rorug04G0326500 Rorug04G0326600
rosa_samantha	Rh1AG290600 Rh2AG297000 Rh4AG378200 Rh4BG390800 Rh4CG405500 Rh4DG384500
rosa_wichuraiana	Rw0G013060 Rw2G026030 Rw4G032370 Rw4G032470 Rw7G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	879
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	581
AciI	CCGC	2 cut(s)	15, 785
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	335, 463
AcuI	CTGAAG	1 cut(s)	98
AcvI	CACGTG	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflII	CTTAAG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	6 cut(s)	127, 387, 636, 686, 808, 845
AjnI	CCWGG	1 cut(s)	850
AluBI	AGCT	4 cut(s)	47, 194, 287, 604
AluI	AGCT	4 cut(s)	47, 194, 287, 604
Alw26I	GTCTC	1 cut(s)	889
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	763
ApeKI	GCWGC	4 cut(s)	191, 249, 284, 377
ApoI	RAATTY	2 cut(s)	335, 463
AsiSI	GCGATCGC	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	183, 581, 583
AspS9I	GGNCC	2 cut(s)	199, 848
AsuHPI	GGTGA	3 cut(s)	119, 164, 536
AvaII	GGWCC	2 cut(s)	199, 848
BbrPI	CACGTG	1 cut(s)	728
BbvCI	CCTCAGC	3 cut(s)	195, 693, 875
BbvI	GCAGC	4 cut(s)	203, 261, 296, 364
BccI	CCATC	2 cut(s)	77, 760
BcgI	CGANNNNNNTGC	2 cut(s)	853, 887
BciT130I	CCWGG	1 cut(s)	852
BcoDI	GTCTC	1 cut(s)	889
BfaI	CTAG	2 cut(s)	63, 605
BfrI	CTTAAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	879
BglII	AGATCT	2 cut(s)	343, 495
BisI	GCNGC	4 cut(s)	192, 250, 285, 378
BlsI	GCNGC	4 cut(s)	193, 251, 286, 379
Bme1390I	CCNGG	1 cut(s)	852
Bme18I	GGWCC	2 cut(s)	199, 848
BmgT120I	GGNCC	2 cut(s)	199, 848
BmiI	GGNNCC	2 cut(s)	133, 610
BmrFI	CCNGG	1 cut(s)	852
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	3 cut(s)	151, 179, 811
BmuI	ACTGGG	1 cut(s)	726
BpmI	CTGGAG	4 cut(s)	69, 425, 503, 533
Bpu10I	CCTNAGC	3 cut(s)	195, 693, 875
BsaAI	YACGTR	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	889
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	3 cut(s)	192, 592, 721
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	69, 634
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	6 cut(s)	186, 354, 558, 707, 770, 866
BseNI	ACTGG	3 cut(s)	192, 592, 721
BsePI	GCGCGC	1 cut(s)	579
BseXI	GCAGC	4 cut(s)	203, 261, 296, 364
Bsh1236I	CGCG	1 cut(s)	581
Bsh1285I	CGRYCG	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	135, 202
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	889
Bso31I	GGTCTC	1 cut(s)	889
Bsp143I	GATC	6 cut(s)	33, 39, 102, 165, 343, 495
BspACI	CCGC	2 cut(s)	15, 785
BspCNI	CTCAG	6 cut(s)	187, 353, 559, 706, 769, 867
BspFNI	CGCG	1 cut(s)	581
BspLI	GGNNCC	2 cut(s)	133, 610
BspMI	ACCTGC	1 cut(s)	879
BspPI	GGATC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	889
BsrI	ACTGG	3 cut(s)	192, 592, 721
BssECI	CCNNGG	1 cut(s)	291
BssHII	GCGCGC	1 cut(s)	579
BssMI	GATC	6 cut(s)	33, 39, 102, 165, 343, 495
BssNAI	GTATAC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	291
Bst1107I	GTATAC	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	2 cut(s)	232, 562
BstAFI	CTTAAG	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	282, 581
BstDEI	CTNAG	7 cut(s)	43, 195, 340, 567, 693, 756, 875
BstF5I	GGATG	2 cut(s)	69, 634
BstFNI	CGCG	1 cut(s)	581
BstHHI	GCGC	3 cut(s)	183, 581, 583
BstKTI	GATC	6 cut(s)	36, 42, 105, 168, 346, 498
BstMAI	GTCTC	1 cut(s)	889
BstMBI	GATC	6 cut(s)	33, 39, 102, 165, 343, 495
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNI	CCWGG	1 cut(s)	852
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	850
BstUI	CGCG	1 cut(s)	581
BstV1I	GCAGC	4 cut(s)	203, 261, 296, 364
BstX2I	RGATCY	3 cut(s)	33, 343, 495
BstYI	RGATCY	3 cut(s)	33, 343, 495
BstZ17I	GTATAC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	69, 634
BveI	ACCTGC	1 cut(s)	879
Cac8I	GCNNGC	2 cut(s)	282, 581
CaiI	CAGNNNCTG	1 cut(s)	763
CfoI	GCGC	3 cut(s)	183, 581, 583
Cfr13I	GGNCC	2 cut(s)	199, 848
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	8 cut(s)	5, 47, 194, 213, 252, 287, 422, 604
CviKI_1	RGCY	8 cut(s)	5, 47, 194, 213, 252, 287, 422, 604
DdeI	CTNAG	7 cut(s)	43, 195, 340, 567, 693, 756, 875
DpnI	GATC	6 cut(s)	35, 41, 104, 167, 345, 497
DpnII	GATC	6 cut(s)	33, 39, 102, 165, 343, 495
Eco130I	CCWWGG	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	889
Eco47I	GGWCC	2 cut(s)	199, 848
Eco57I	CTGAAG	1 cut(s)	98
Eco72I	CACGTG	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	1 cut(s)	319
FaiI	YATR	9 cut(s)	8, 60, 309, 317, 350, 354, 371, 396, 745
FatI	CATG	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	4 cut(s)	192, 250, 285, 378
FokI	GGATG	2 cut(s)	56, 641
Fsp4HI	GCNGC	4 cut(s)	192, 250, 285, 378
FspBI	CTAG	2 cut(s)	63, 605
GlaI	GCGC	3 cut(s)	182, 580, 582
GluI	GCNGC	4 cut(s)	192, 250, 285, 378
GsuI	CTGGAG	4 cut(s)	69, 425, 503, 533
HapII	CCGG	2 cut(s)	135, 202
HhaI	GCGC	3 cut(s)	183, 581, 583
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	3 cut(s)	181, 579, 581
HinP1I	GCGC	3 cut(s)	181, 579, 581
HincII	GTYRAC	2 cut(s)	661, 816
HindII	GTYRAC	2 cut(s)	661, 816
HinfI	GANTC	5 cut(s)	456, 508, 721, 760, 788
HpaII	CCGG	2 cut(s)	135, 202
HphI	GGTGA	3 cut(s)	119, 164, 536
Hpy166II	GTNNAC	4 cut(s)	60, 110, 661, 816
Hpy188I	TCNGA	7 cut(s)	97, 148, 343, 619, 751, 759, 765
Hpy188III	TCNNGA	7 cut(s)	37, 219, 235, 404, 460, 512, 798
Hpy8I	GTNNAC	4 cut(s)	60, 110, 661, 816
HpyAV	CCTTC	3 cut(s)	143, 319, 839
HpyCH4III	ACNGT	2 cut(s)	232, 562
HpyCH4IV	ACGT	2 cut(s)	555, 727
HpyCH4V	TGCA	4 cut(s)	10, 394, 574, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	7 cut(s)	43, 195, 340, 567, 693, 756, 875
HpySE526I	ACGT	2 cut(s)	555, 727
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	3 cut(s)	181, 579, 581
Kzo9I	GATC	6 cut(s)	33, 39, 102, 165, 343, 495
LmnI	GCTCC	2 cut(s)	50, 484
Lsp1109I	GCAGC	4 cut(s)	203, 261, 296, 364
LweI	GCATC	3 cut(s)	151, 179, 811
MaeI	CTAG	2 cut(s)	63, 605
MaeII	ACGT	2 cut(s)	555, 727
MaeIII	GTNAC	8 cut(s)	152, 216, 311, 355, 412, 556, 562, 739
MalI	GATC	6 cut(s)	35, 41, 104, 167, 345, 497
MboI	GATC	6 cut(s)	33, 39, 102, 165, 343, 495
MflI	RGATCY	3 cut(s)	33, 343, 495
MluCI	AATT	6 cut(s)	89, 255, 335, 463, 476, 780
MlyI	GAGTC	3 cut(s)	465, 769, 797
MnlI	CCTC	7 cut(s)	190, 412, 538, 664, 665, 702, 870
MseI	TTAA	2 cut(s)	78, 708
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	2 cut(s)	135, 202
MspR9I	CCNGG	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	852
MvnI	CGCG	1 cut(s)	581
MwoI	GCNNNNNNNGC	1 cut(s)	580
NdeII	GATC	6 cut(s)	33, 39, 102, 165, 343, 495
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	2 cut(s)	133, 610
NmuCI	GTSAC	6 cut(s)	152, 216, 355, 412, 562, 739
NspI	RCATGY	1 cut(s)	319
PauI	GCGCGC	1 cut(s)	579
PciI	ACATGT	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	508, 721
PflMI	CCANNNNNTGG	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	850
PkrI	GCNGC	4 cut(s)	193, 251, 286, 379
Ple19I	CGATCG	1 cut(s)	168
PleI	GAGTC	3 cut(s)	464, 768, 796
PmaCI	CACGTG	1 cut(s)	728
PmlI	CACGTG	1 cut(s)	728
PpsI	GAGTC	3 cut(s)	464, 768, 796
Ppu21I	YACGTR	1 cut(s)	728
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	850
PspCI	CACGTG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	2 cut(s)	133, 610
PspPI	GGNCC	2 cut(s)	199, 848
PstNI	CAGNNNCTG	1 cut(s)	763
PsuI	RGATCY	3 cut(s)	33, 343, 495
PteI	GCGCGC	1 cut(s)	579
PvuI	CGATCG	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	194
RgaI	GCGATCGC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	78, 708
SatI	GCNGC	4 cut(s)	192, 250, 285, 378
Sau3AI	GATC	6 cut(s)	33, 39, 102, 165, 343, 495
Sau96I	GGNCC	2 cut(s)	199, 848
SchI	GAGTC	3 cut(s)	465, 769, 797
ScrFI	CCNGG	1 cut(s)	852
SfaAI	GCGATCGC	1 cut(s)	168
SfaNI	GCATC	3 cut(s)	151, 179, 811
SgfI	GCGATCGC	1 cut(s)	168
SinI	GGWCC	2 cut(s)	199, 848
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	6 cut(s)	89, 255, 335, 463, 476, 780
SsiI	CCGC	2 cut(s)	15, 785
SspMI	CTAG	2 cut(s)	63, 605
StyD4I	CCNGG	1 cut(s)	850
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	232, 562
TaiI	ACGT	2 cut(s)	558, 730
TaqI	TCGA	1 cut(s)	506
TaqII	GACCGA	1 cut(s)	871
TasI	AATT	6 cut(s)	89, 255, 335, 463, 476, 780
TfiI	GAWTC	2 cut(s)	508, 721
Tru1I	TTAA	2 cut(s)	78, 708
Tru9I	TTAA	2 cut(s)	78, 708
TseFI	GTSAC	6 cut(s)	152, 216, 355, 412, 562, 739
TseI	GCWGC	4 cut(s)	191, 249, 284, 377
Tsp45I	GTSAC	6 cut(s)	152, 216, 355, 412, 562, 739
TspDTI	ATGAA	1 cut(s)	872
Van91I	CCANNNNNTGG	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	199, 848
XapI	RAATTY	2 cut(s)	335, 463
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	2 cut(s)	63, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.