Rh4BG390800

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003884
Physical Location & Seq
Forward (+)
54376485 .. 54380463
3979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG390800.1

Sequence Viewer

Length: 777 bp
ATGTATAACCGATTGCTGGATGAGATACGCTCTGCACGACAAACAGTTGTACTGAATGCTAATGGGGGTGGCCAAGGTAACTTGACATCACTTATAGTGCCAGCTGCTACCTTGGGGGCAGTGGGTTACGGTTACATGTGGTGGAAGGGTCTTAAATTCTCGGATCTCATGTATGTGACAAAGCGTAATATGACTGCTGCTGTTACAAACTTGACAAAAAGTCTGGATACTGTAAAAGAAGCTGTTGTCAACACGAAGAAGCACCTGACACAGAGAATCCAGAATTTGGATGATAAAGTGCTGGAACAAAATGATCTCTCAAAGTCAATTAAGAATGATGTTGCTGGAGTTCAACATTCTCTCACTGATCTGGACTTTAACTTGAGTCAACTGCAGAGCTTGGTCTCTGGTCTGGATTGGAAGATATGTTCTCTTGAAGAAAAGCAGGATTTCGCAAATATGGGTGTTGCTTACCTTTGCAACTTTGTTAGCGGGAAAAAAGTTGAAATGCCTGGAGCTCTTCAGAAGCAGCTTAAAAATTCTGATAATGCACGGGGTGGCCGATTACTCTCATATTCAGAACCAAGCATAATGGGGCTTAAAGAAATTGCGGATACTGTGTCCGCCCGTTTGAATAGTGATGGTATCGTGCAAGATGATATTCCCAAGTTGGAAGAGCCTCCAAGGAACCTGCTAAGGTCAGAATTGAAACTCTGTCTTGGGTTTGTTGAACCAATCATGTGTGATGTTTGCATCTGTGTTTTACCAACCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

258

Amino Acids

28.47

Weight (kDa)

6.73

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 26 - 149 6.2e-46 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 699
AccB7I CCANNNNNTGG 1 cut(s) 286
AciI CCGC 3 cut(s) 492, 611, 624
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 70, 559
AcsI RAATTY 3 cut(s) 155, 283, 538
AcuI CTGAAG 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 16, 286
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 6 cut(s) 353, 437, 506, 634, 709, 731
AhdI GACNNNNNGTC 1 cut(s) 219
AjnI CCWGG 1 cut(s) 511
AloI GAACNNNNNNTCC 2 cut(s) 412, 444
AluBI AGCT 5 cut(s) 104, 242, 399, 518, 532
AluI AGCT 5 cut(s) 104, 242, 399, 518, 532
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 1 cut(s) 171
AoxI GGCC 2 cut(s) 70, 559
ApeKI GCWGC 3 cut(s) 104, 197, 529
ApoI RAATTY 3 cut(s) 155, 283, 538
BalI TGGCCA 1 cut(s) 72
BanII GRGCYC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 3 cut(s) 91, 184, 541
BccI CCATC 1 cut(s) 635
BciT130I CCWGG 1 cut(s) 513
BciVI GTATCC 2 cut(s) 220, 607
BcoDI GTCTC 1 cut(s) 409
BfmI CTRYAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 699
BfuI GTATCC 2 cut(s) 220, 607
BisI GCNGC 3 cut(s) 105, 198, 530
BlsI GCNGC 3 cut(s) 106, 199, 531
Bme1390I CCNGG 1 cut(s) 513
BmeRI GACNNNNNGTC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 689
BmrFI CCNGG 1 cut(s) 513
BmsI GCATC 1 cut(s) 762
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 2 cut(s) 366, 534
Bpu10I CCTNAGC 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 403
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 73, 111, 683
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 286
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 3 cut(s) 73, 111, 683
BseGI GGATG 2 cut(s) 25, 295
BseLI CCNNNNNNNGG 2 cut(s) 16, 286
BseXI GCAGC 3 cut(s) 91, 184, 541
BsgI GTGCAG 1 cut(s) 18
BshFI GGCC 2 cut(s) 72, 561
BsiHKAI GWGCWC 1 cut(s) 520
BslI CCNNNNNNNGG 2 cut(s) 16, 286
BsmAI GTCTC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 2 cut(s) 72, 561
Bso31I GGTCTC 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 3 cut(s) 163, 313, 367
BspACI CCGC 3 cut(s) 492, 611, 624
BspANI GGCC 2 cut(s) 72, 561
BspLI GGNNCC 1 cut(s) 689
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 699
BspPI GGATC 1 cut(s) 171
BspQI GCTCTTC 2 cut(s) 525, 669
BspTNI GGTCTC 1 cut(s) 409
BssECI CCNNGG 3 cut(s) 73, 111, 683
BssMI GATC 3 cut(s) 163, 313, 367
BssT1I CCWWGG 3 cut(s) 73, 111, 683
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 4 cut(s) 46, 131, 232, 619
Bst6I CTCTTC 2 cut(s) 525, 669
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 695
BstF5I GGATG 2 cut(s) 25, 295
BstKTI GATC 3 cut(s) 166, 316, 370
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 3 cut(s) 163, 313, 367
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 511
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 91, 184, 541
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuI GTATCC 2 cut(s) 220, 607
BsuRI GGCC 2 cut(s) 72, 561
BtsCI GGATG 2 cut(s) 25, 295
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 363
BveI ACCTGC 1 cut(s) 699
Cac8I GCNNGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 50
CviAII CATG 4 cut(s) 136, 169, 739, 772
CviJI RGCY 9 cut(s) 72, 104, 242, 399, 518, 532, 561, 598, 679
CviKI_1 RGCY 9 cut(s) 72, 104, 242, 399, 518, 532, 561, 598, 679
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 695
DpnI GATC 3 cut(s) 165, 315, 369
DpnII GATC 3 cut(s) 163, 313, 367
DraIII CACNNNGTG 1 cut(s) 557
DriI GACNNNNNGTC 1 cut(s) 219
EaeI YGGCCR 2 cut(s) 70, 559
Eam1104I CTCTTC 2 cut(s) 525, 669
Eam1105I GACNNNNNGTC 1 cut(s) 219
EarI CTCTTC 2 cut(s) 525, 669
EciI GGCGGA 1 cut(s) 613
Ecl136II GAGCTC 1 cut(s) 518
Eco130I CCWWGG 3 cut(s) 73, 111, 683
Eco24I GRGCYC 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 506
EcoICRI GAGCTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 511
EcoT14I CCWWGG 3 cut(s) 73, 111, 683
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 3 cut(s) 73, 111, 683
FaeI CATG 4 cut(s) 139, 172, 742, 775
FatI CATG 4 cut(s) 135, 168, 738, 771
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 3 cut(s) 105, 198, 530
FokI GGATG 2 cut(s) 32, 302
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 3 cut(s) 105, 198, 530
GluI GCNGC 3 cut(s) 105, 198, 530
GsuI CTGGAG 2 cut(s) 366, 534
HaeIII GGCC 2 cut(s) 72, 561
Hin1II CATG 4 cut(s) 139, 172, 742, 775
HincII GTYRAC 2 cut(s) 250, 389
HindII GTYRAC 2 cut(s) 250, 389
HinfI GANTC 2 cut(s) 276, 385
Hpy166II GTNNAC 2 cut(s) 250, 389
Hpy188I TCNGA 5 cut(s) 163, 525, 544, 580, 703
Hpy188III TCNNGA 5 cut(s) 224, 280, 371, 413, 434
Hpy8I GTNNAC 2 cut(s) 250, 389
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 4 cut(s) 46, 131, 232, 619
HpyCH4V TGCA 6 cut(s) 35, 394, 480, 551, 652, 753
HpyF3I CTNAG 1 cut(s) 695
Hsp92II CATG 4 cut(s) 139, 172, 742, 775
Kzo9I GATC 3 cut(s) 163, 313, 367
LguI GCTCTTC 2 cut(s) 525, 669
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 3 cut(s) 91, 184, 541
LweI GCATC 1 cut(s) 762
MaeIII GTNAC 5 cut(s) 77, 125, 131, 175, 202
MalI GATC 3 cut(s) 165, 315, 369
MboI GATC 3 cut(s) 163, 313, 367
MboII GAAGA 5 cut(s) 268, 433, 449, 512, 686
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 520
MlsI TGGCCA 1 cut(s) 72
MluCI AATT 6 cut(s) 155, 283, 327, 538, 606, 704
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 651
MnlI CCTC 1 cut(s) 690
Mox20I TGGCCA 1 cut(s) 72
MscI TGGCCA 1 cut(s) 72
MseI TTAA 5 cut(s) 153, 330, 378, 534, 600
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 513
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 1 cut(s) 513
NdeII GATC 3 cut(s) 163, 313, 367
NlaIII CATG 4 cut(s) 139, 172, 742, 775
NlaIV GGNNCC 1 cut(s) 689
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 1 cut(s) 139
PciI ACATGT 1 cut(s) 135
PciSI GCTCTTC 2 cut(s) 525, 669
PcsI WCGNNNNNNNCGW 2 cut(s) 34, 559
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 276
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 3 cut(s) 106, 199, 531
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PscI ACATGT 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 689
PstI CTGCAG 1 cut(s) 396
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 520
SapI GCTCTTC 2 cut(s) 525, 669
SaqAI TTAA 5 cut(s) 153, 330, 378, 534, 600
SatI GCNGC 3 cut(s) 105, 198, 530
Sau3AI GATC 3 cut(s) 163, 313, 367
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 1 cut(s) 762
SfcI CTRYAG 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 6 cut(s) 155, 283, 327, 538, 606, 704
SsiI CCGC 3 cut(s) 492, 611, 624
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 511
StyI CCWWGG 3 cut(s) 73, 111, 683
TaaI ACNGT 4 cut(s) 46, 131, 232, 619
TasI AATT 6 cut(s) 155, 283, 327, 538, 606, 704
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 5 cut(s) 153, 330, 378, 534, 600
Tru9I TTAA 5 cut(s) 153, 330, 378, 534, 600
TscAI CASTG 2 cut(s) 126, 370
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 3 cut(s) 104, 197, 529
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 2 cut(s) 126, 370
Van91I CCANNNNNTGG 1 cut(s) 286
XapI RAATTY 3 cut(s) 155, 283, 538
XceI RCATGY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.