Rh4AG378200

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003884
Physical Location & Seq
Forward (+)
68521619 .. 68525475
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG378200.1

Sequence Viewer

Length: 723 bp
ATGGCTATGCAAATTGGTCTTAGCAGGGTCCTTCTCATAGCTGGAGCAGGTTACACTAGCTCCATCCTCGTTAGGAACGGCAAATTCTCCGACGTGATCGCTGAGCTTCAGGCTTTGTTGAATGGATCAGGAGAGCAATCAGAAGGTGATTCTGATAAGATTGCATCGCAGATGTATAACCGATTGCTGGATGAGATACGCTCTGCACGACAAACAGTTGTACTGAATGCTAATGGGGCTGGCCAAGGTAATTTGACATCACTTATAGTGCCAGCTGCAACCTTGGGGGCAGTGGGTTACGGTTACATGTGGTGGAAGGGTCTTAAATTCTCGGATCTCATGTATGTGACAAAGCGTAATATGACTGCTGCTGTTACAAACTTGACAAAAAGTCTGGATACTGTAAAAGAAGCTGTTGTCAACACGAAGAAGCACCTGACACAGAGAATCCAGAATTTGGATGATAAAGTGCTGGAACAAAATGATCTCTCAAAGTCAATTAAGACTGATGTTGCTGGAGTTCAACATTCTCTCACTGATCTGGACTTTAACTTGAGTCAACTGCAGAGCTTGGTCTCTGGTCTGGATTGGAAGATATGTTCTCTTGAAGAAAAGCAGGATTTCGCAAATATGGGTGTTGCTTACCTTTGCAACTTTGTTAGCGGGAAAAAAGTTGAAATGCCTGGAGCTCTTCAGGTCTGTACTTGCTTTTTGGATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

240

Amino Acids

26.12

Weight (kDa)

6.14

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 83 - 206 1.1e-45 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 721
Acc36I ACCTGC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 1 cut(s) 663
AclWI GGATC 2 cut(s) 133, 342
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 3 cut(s) 83, 326, 454
AcuI CTGAAG 2 cut(s) 92, 677
AfaI GTAC 2 cut(s) 222, 703
AfiI CCNNNNNNNGG 2 cut(s) 187, 457
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 4 cut(s) 121, 524, 608, 677
AhdI GACNNNNNGTC 1 cut(s) 390
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 682
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 7 cut(s) 41, 60, 106, 275, 413, 570, 689
AluI AGCT 7 cut(s) 41, 60, 106, 275, 413, 570, 689
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 2 cut(s) 133, 342
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 275, 368
ApoI RAATTY 3 cut(s) 83, 326, 454
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 243
BanII GRGCYC 1 cut(s) 691
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 2 cut(s) 262, 355
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 684
BciVI GTATCC 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 563
BfuAI ACCTGC 1 cut(s) 38
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 2 cut(s) 276, 369
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 2 cut(s) 277, 370
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 1 cut(s) 28
BmeRI GACNNNNNGTC 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 1 cut(s) 173
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 3 cut(s) 63, 537, 705
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 574
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 2 cut(s) 244, 282
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 457
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 244, 282
BseGI GGATG 3 cut(s) 63, 196, 466
BseLI CCNNNNNNNGG 2 cut(s) 187, 457
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 262, 355
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 691
BslI CCNNNNNNNGG 2 cut(s) 187, 457
BsmAI GTCTC 1 cut(s) 580
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 580
Bsp1286I GDGCHC 1 cut(s) 691
Bsp143I GATC 5 cut(s) 96, 125, 334, 484, 538
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 1 cut(s) 663
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 29
BspMAI CTGCAG 1 cut(s) 567
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 2 cut(s) 133, 342
BspQI GCTCTTC 1 cut(s) 696
BspTNI GGTCTC 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 244, 282
BssMI GATC 5 cut(s) 96, 125, 334, 484, 538
BssT1I CCWWGG 2 cut(s) 244, 282
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 217, 302, 403
Bst6I CTCTTC 1 cut(s) 696
BstC8I GCNNGC 2 cut(s) 241, 273
BstDEI CTNAG 2 cut(s) 20, 102
BstF5I GGATG 3 cut(s) 63, 196, 466
BstKTI GATC 5 cut(s) 99, 128, 337, 487, 541
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 5 cut(s) 96, 125, 334, 484, 538
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 682
BstSFI CTRYAG 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 262, 355
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 3 cut(s) 63, 196, 466
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 534
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 241, 273
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 221, 702
CviAII CATG 2 cut(s) 307, 340
CviQI GTAC 2 cut(s) 221, 702
DdeI CTNAG 2 cut(s) 20, 102
DpnI GATC 5 cut(s) 98, 127, 336, 486, 540
DpnII GATC 5 cut(s) 96, 125, 334, 484, 538
DriI GACNNNNNGTC 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 696
Eam1105I GACNNNNNGTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 696
Ecl136II GAGCTC 1 cut(s) 689
Eco130I CCWWGG 2 cut(s) 244, 282
Eco24I GRGCYC 1 cut(s) 691
Eco31I GGTCTC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 92, 677
EcoICRI GAGCTC 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 682
EcoT14I CCWWGG 2 cut(s) 244, 282
EcoT38I GRGCYC 1 cut(s) 691
ErhI CCWWGG 2 cut(s) 244, 282
FaeI CATG 2 cut(s) 310, 343
FatI CATG 2 cut(s) 306, 339
FauI CCCGC 1 cut(s) 656
Fnu4HI GCNGC 2 cut(s) 276, 369
FokI GGATG 3 cut(s) 50, 203, 473
FriOI GRGCYC 1 cut(s) 691
Fsp4HI GCNGC 2 cut(s) 276, 369
FspBI CTAG 1 cut(s) 57
GluI GCNGC 2 cut(s) 276, 369
GsuI CTGGAG 3 cut(s) 63, 537, 705
HaeIII GGCC 1 cut(s) 243
Hin1II CATG 2 cut(s) 310, 343
HincII GTYRAC 2 cut(s) 421, 560
HindII GTYRAC 2 cut(s) 421, 560
HinfI GANTC 3 cut(s) 149, 447, 556
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 421, 560
Hpy188I TCNGA 4 cut(s) 91, 142, 154, 334
Hpy188III TCNNGA 6 cut(s) 129, 395, 451, 542, 584, 605
Hpy8I GTNNAC 2 cut(s) 421, 560
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 41, 137, 310
HpyCH4III ACNGT 3 cut(s) 217, 302, 403
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 6 cut(s) 10, 164, 206, 278, 565, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 20, 102
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 2 cut(s) 310, 343
Kzo9I GATC 5 cut(s) 96, 125, 334, 484, 538
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 3 cut(s) 44, 65, 686
Lsp1109I GCAGC 2 cut(s) 262, 355
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 5 cut(s) 50, 296, 302, 346, 373
MalI GATC 5 cut(s) 98, 127, 336, 486, 540
MboI GATC 5 cut(s) 96, 125, 334, 484, 538
MboII GAAGA 4 cut(s) 439, 604, 620, 683
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 691
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 6 cut(s) 12, 83, 250, 326, 454, 498
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 1 cut(s) 77
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 3 cut(s) 324, 501, 549
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 5 cut(s) 96, 125, 334, 484, 538
NlaIII CATG 2 cut(s) 310, 343
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 696
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 149, 447
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 2 cut(s) 277, 370
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
PpuMI RGGWCCY 1 cut(s) 28
PscI ACATGT 1 cut(s) 306
PsiI TTATAA 1 cut(s) 721
Psp124BI GAGCTC 1 cut(s) 691
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 28
PspPPI RGGWCCY 1 cut(s) 28
PstI CTGCAG 1 cut(s) 567
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 222, 703
RsaNI GTAC 2 cut(s) 221, 702
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 691
SapI GCTCTTC 1 cut(s) 696
SaqAI TTAA 3 cut(s) 324, 501, 549
SatI GCNGC 2 cut(s) 276, 369
Sau3AI GATC 5 cut(s) 96, 125, 334, 484, 538
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 563
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
Sse9I AATT 6 cut(s) 12, 83, 250, 326, 454, 498
SsiI CCGC 1 cut(s) 663
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 2 cut(s) 244, 282
TaaI ACNGT 3 cut(s) 217, 302, 403
TaiI ACGT 1 cut(s) 96
TasI AATT 6 cut(s) 12, 83, 250, 326, 454, 498
TatI WGTACW 2 cut(s) 220, 701
TfiI GAWTC 2 cut(s) 149, 447
Tru1I TTAA 3 cut(s) 324, 501, 549
Tru9I TTAA 3 cut(s) 324, 501, 549
TscAI CASTG 2 cut(s) 297, 541
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 275, 368
Tsp45I GTSAC 1 cut(s) 346
TspRI CASTG 2 cut(s) 297, 541
Van91I CCANNNNNTGG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 3 cut(s) 83, 326, 454
XceI RCATGY 1 cut(s) 310
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.