Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037701.1

Orthogroup ID

OG0003884

Physical Location & Seq

Genomic Coordinates Reverse (-)

2077 .. 5628

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037701.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggctatgcaaattggtcttagcagggtccttctcatagctggagcaggttacactagctccatcctcgttaggaacggcaaactctccgacgtgatcgctgagcttcaggctttgttgaatggatcaggagagcaatcagaaggtgattctgataagattgcatcgcaggctttgttgaatggatcaggagagcaatcagaaggtgattctgataagattgcatcgcagatgtataaccgattgctggatgagatacgctctgcacgacaaacagttgtgctgaatgctaatgggggtggccaaggtaacttgacatcacttatagtgccagctgctaccttgggggcagtgggttacggttacatgtggtggaagggtcttaaattctcggatctcatgtatgtgacaaagcgtaatatgactgctgctgttacaaacttgacaaaaagtctggatactgtaaaagaagctgttgtcaacacgaagaagcacctgacacagagaatccagaatttggatgataaagtgctggaacaaaatgatctctcaaagtcaattaagaatgatgttgctggagttcaacattctctcactgatctggactttaacttgagtcaactgcagagcttggtctctggtctggattggaagatatgttctcttgaagaaaagcaggatttcgcaaatatgggtgttgcttacctttgcaactttgttagcgggaaaaaagttgaaatgcctggagctcttcagaagcaacttaaaaattctgataatgcacggggtggccgattactctcatattcagaaccaagcataatggggcttaaagaaattgcggatactgtgtccgcccgtttgaatagtgatggtatcgtgcaagatgatattcccaagttggaagagcctccaaggaacctgctgaggtcagtgtcaaccaagtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

316

Amino Acids

34.19

Weight (kDa)

5.85

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27000 AT2G02730 AT2G02730 AT2G02730
fragaria_vesca	FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_4g31870
malus_domestica	MD05G1007200.v1.1 MD13G1078200.v1.1 MD16G1077900.v1.1
prunus_persica	Prupe.1G268900_v2.0.a1
pyrus_communis	pycom13g06780 pycom13g06790 pycom16g06730
rosa_chinensis	RchiOBHm_Chr4g0440531
rosa_laevigata	RLG00000006171
rosa_multiflora	Rmu_sc0016635.1_g000001 Rmu_sc0037701.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381360
rosa_rugosa	Rorug04G0326500 Rorug04G0326600
rosa_samantha	Rh1AG290600 Rh2AG297000 Rh4AG378200 Rh4BG390800 Rh4CG405500 Rh4DG384500
rosa_wichuraiana	Rw0G013060 Rw2G026030 Rw4G032370 Rw4G032470 Rw7G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	38, 930
AccB7I	CCANNNNNTGG	1 cut(s)	517
AciI	CCGC	3 cut(s)	723, 842, 855
AclWI	GGATC	3 cut(s)	133, 193, 402
AcoI	YGGCCR	2 cut(s)	301, 790
AcsI	RAATTY	3 cut(s)	386, 514, 769
AcuI	CTGAAG	2 cut(s)	92, 737
AdeI	CACNNNGTG	1 cut(s)	788
AfiI	CCNNNNNNNGG	2 cut(s)	247, 517
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	6 cut(s)	121, 181, 584, 668, 737, 865
AhdI	GACNNNNNGTC	1 cut(s)	450
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	742
AloI	GAACNNNNNNTCC	2 cut(s)	643, 675
AluBI	AGCT	7 cut(s)	41, 60, 106, 335, 473, 630, 749
AluI	AGCT	7 cut(s)	41, 60, 106, 335, 473, 630, 749
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	3 cut(s)	133, 193, 402
AoxI	GGCC	2 cut(s)	301, 790
ApeKI	GCWGC	2 cut(s)	335, 428
ApoI	RAATTY	3 cut(s)	386, 514, 769
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	158, 218
AvaII	GGWCC	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	751
Bbv12I	GWGCWC	1 cut(s)	751
BbvCI	CCTCAGC	1 cut(s)	926
BbvI	GCAGC	2 cut(s)	322, 415
BccI	CCATC	2 cut(s)	71, 866
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	744
BciVI	GTATCC	2 cut(s)	451, 838
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	623
BfuAI	ACCTGC	2 cut(s)	38, 930
BfuI	GTATCC	2 cut(s)	451, 838
BisI	GCNGC	2 cut(s)	336, 429
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	2 cut(s)	337, 430
Bme1390I	CCNGG	1 cut(s)	744
Bme18I	GGWCC	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	29, 920
BmrFI	CCNGG	1 cut(s)	744
BmsI	GCATC	2 cut(s)	173, 233
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	3 cut(s)	63, 597, 765
Bpu10I	CCTNAGC	1 cut(s)	926
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	634
BsaI	GGTCTC	1 cut(s)	640
BsaJI	CCNNGG	3 cut(s)	304, 342, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 517
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	3 cut(s)	304, 342, 914
BseGI	GGATG	3 cut(s)	63, 256, 526
BseLI	CCNNNNNNNGG	2 cut(s)	247, 517
BseMII	CTCAG	2 cut(s)	93, 917
BseXI	GCAGC	2 cut(s)	322, 415
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	303, 792
BsiHKAI	GWGCWC	1 cut(s)	751
BslI	CCNNNNNNNGG	2 cut(s)	247, 517
BsmAI	GTCTC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	303, 792
Bso31I	GGTCTC	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	6 cut(s)	96, 125, 185, 394, 544, 598
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	3 cut(s)	723, 842, 855
BspANI	GGCC	2 cut(s)	303, 792
BspCNI	CTCAG	2 cut(s)	94, 918
BspLI	GGNNCC	2 cut(s)	29, 920
BspMAI	CTGCAG	1 cut(s)	627
BspMI	ACCTGC	2 cut(s)	38, 930
BspPI	GGATC	3 cut(s)	133, 193, 402
BspQI	GCTCTTC	2 cut(s)	756, 900
BspTNI	GGTCTC	1 cut(s)	640
BssECI	CCNNGG	3 cut(s)	304, 342, 914
BssMI	GATC	6 cut(s)	96, 125, 185, 394, 544, 598
BssT1I	CCWWGG	3 cut(s)	304, 342, 914
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	4 cut(s)	277, 362, 463, 850
Bst6I	CTCTTC	2 cut(s)	756, 900
BstC8I	GCNNGC	2 cut(s)	171, 333
BstDEI	CTNAG	3 cut(s)	20, 102, 926
BstF5I	GGATG	3 cut(s)	63, 256, 526
BstKTI	GATC	6 cut(s)	99, 128, 188, 397, 547, 601
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	6 cut(s)	96, 125, 185, 394, 544, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	742
BstSFI	CTRYAG	1 cut(s)	623
BstV1I	GCAGC	2 cut(s)	322, 415
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuI	GTATCC	2 cut(s)	451, 838
BsuRI	GGCC	2 cut(s)	303, 792
BtgZI	GCGATG	2 cut(s)	150, 210
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	63, 256, 526
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	357, 594, 939
BveI	ACCTGC	2 cut(s)	38, 930
Cac8I	GCNNGC	2 cut(s)	171, 333
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	2 cut(s)	367, 400
DdeI	CTNAG	3 cut(s)	20, 102, 926
DpnI	GATC	6 cut(s)	98, 127, 187, 396, 546, 600
DpnII	GATC	6 cut(s)	96, 125, 185, 394, 544, 598
DraIII	CACNNNGTG	1 cut(s)	788
DriI	GACNNNNNGTC	1 cut(s)	450
EaeI	YGGCCR	2 cut(s)	301, 790
Eam1104I	CTCTTC	2 cut(s)	756, 900
Eam1105I	GACNNNNNGTC	1 cut(s)	450
EarI	CTCTTC	2 cut(s)	756, 900
EciI	GGCGGA	1 cut(s)	844
Ecl136II	GAGCTC	1 cut(s)	749
Eco130I	CCWWGG	3 cut(s)	304, 342, 914
Eco24I	GRGCYC	1 cut(s)	751
Eco31I	GGTCTC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	749
Eco57I	CTGAAG	2 cut(s)	92, 737
EcoICRI	GAGCTC	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	3 cut(s)	304, 342, 914
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	3 cut(s)	304, 342, 914
FaeI	CATG	2 cut(s)	370, 403
FatI	CATG	2 cut(s)	366, 399
FauI	CCCGC	1 cut(s)	716
Fnu4HI	GCNGC	2 cut(s)	336, 429
FokI	GGATG	3 cut(s)	50, 263, 533
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	2 cut(s)	336, 429
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	2 cut(s)	336, 429
GsuI	CTGGAG	3 cut(s)	63, 597, 765
HaeIII	GGCC	2 cut(s)	303, 792
Hin1II	CATG	2 cut(s)	370, 403
HincII	GTYRAC	3 cut(s)	481, 620, 939
HindII	GTYRAC	3 cut(s)	481, 620, 939
HinfI	GANTC	4 cut(s)	149, 209, 507, 616
HphI	GGTGA	2 cut(s)	158, 218
Hpy166II	GTNNAC	3 cut(s)	481, 620, 939
Hpy188I	TCNGA	9 cut(s)	91, 142, 154, 202, 214, 394, 756, 775, 811
Hpy188III	TCNNGA	7 cut(s)	129, 189, 455, 511, 602, 644, 665
Hpy8I	GTNNAC	3 cut(s)	481, 620, 939
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	41, 137, 197, 370
HpyCH4III	ACNGT	4 cut(s)	277, 362, 463, 850
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	8 cut(s)	10, 164, 224, 266, 625, 711, 782, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	3 cut(s)	20, 102, 926
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	370, 403
Kzo9I	GATC	6 cut(s)	96, 125, 185, 394, 544, 598
LguI	GCTCTTC	2 cut(s)	756, 900
LmnI	GCTCC	3 cut(s)	44, 65, 746
Lsp1109I	GCAGC	2 cut(s)	322, 415
LweI	GCATC	2 cut(s)	173, 233
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	6 cut(s)	50, 308, 356, 362, 406, 433
MalI	GATC	6 cut(s)	98, 127, 187, 396, 546, 600
MboI	GATC	6 cut(s)	96, 125, 185, 394, 544, 598
MboII	GAAGA	5 cut(s)	499, 664, 680, 743, 917
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	751
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	6 cut(s)	12, 386, 514, 558, 769, 837
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	2 cut(s)	114, 882
MnlI	CCTC	3 cut(s)	77, 921, 921
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	5 cut(s)	384, 561, 609, 765, 831
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	6 cut(s)	96, 125, 185, 394, 544, 598
NlaIII	CATG	2 cut(s)	370, 403
NlaIV	GGNNCC	2 cut(s)	29, 920
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	1 cut(s)	370
PciI	ACATGT	1 cut(s)	366
PciSI	GCTCTTC	2 cut(s)	756, 900
PcsI	WCGNNNNNNNCGW	2 cut(s)	265, 790
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	149, 209, 507
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	337, 430
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
PpuMI	RGGWCCY	1 cut(s)	28
PscI	ACATGT	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	2 cut(s)	29, 920
PspPI	GGNCC	1 cut(s)	28
PspPPI	RGGWCCY	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	751
SapI	GCTCTTC	2 cut(s)	756, 900
SaqAI	TTAA	5 cut(s)	384, 561, 609, 765, 831
SatI	GCNGC	2 cut(s)	336, 429
Sau3AI	GATC	6 cut(s)	96, 125, 185, 394, 544, 598
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	1 cut(s)	744
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	2 cut(s)	173, 233
SfcI	CTRYAG	1 cut(s)	623
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	6 cut(s)	12, 386, 514, 558, 769, 837
SsiI	CCGC	3 cut(s)	723, 842, 855
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	751
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	3 cut(s)	304, 342, 914
TaaI	ACNGT	4 cut(s)	277, 362, 463, 850
TaiI	ACGT	1 cut(s)	96
TasI	AATT	6 cut(s)	12, 386, 514, 558, 769, 837
TfiI	GAWTC	3 cut(s)	149, 209, 507
Tru1I	TTAA	5 cut(s)	384, 561, 609, 765, 831
Tru9I	TTAA	5 cut(s)	384, 561, 609, 765, 831
TscAI	CASTG	3 cut(s)	357, 601, 939
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	335, 428
Tsp45I	GTSAC	1 cut(s)	406
TspRI	CASTG	3 cut(s)	357, 601, 939
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	3 cut(s)	386, 514, 769
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.