RLG00000006171

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003884
Physical Location & Seq
Reverse (-)
4901659 .. 4904884
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006171

Sequence Viewer

Length: 891 bp
ATGGCTATGCAAATTGGTCTTAGCAGGGTCCTTCTCATAGCTGGAGCAGGTTACACTAGCTCCATCCTCGTTAGGAACGGCAAACTCTCTGACGTGATCGCTGAGCTTCAGGCTTTGTTGAATGGATCAGGAGAGCAATCAGAAGGTGATTCTGATAAGATTGCATCGCAGATGTATAACCGATTGCTGGATGAGATACGCTCTGCACGACAAACAGTTGTACTGAATGCTAATGGGGGTGGCCAAGGTAACTTGACATCACTTATAGTGCCAGCTGCTACCTTGGGGGCAGTGGGTTACGGTTACATGTGGTGGAAGGGTCTTAAATTCTCGGATCTCATGTATGTGACAAAGCGTAATATGACTGCTGCTGTTACAAACTTGACAAAAAGTCTGGATACTGTAAAAGAAGCTGTTGTCAACACAAAGAAGCACCTGACACAGAGAATCCAGAATTTGGATGATAAAGTGCTGGAACAAAATGATCTCTCAAAGTCAATTAAGAATGATGTTGCTGGAGTTCAACATTCTCTCACTGATCTGGACTTTAACTTGAGTCAACTGCAGAGCTTGGTCTCTGGTCTGGATTGGAAGATATGTTCTCTTGAAGAAAAGCAGGATTTCGCAAATATGGGTGTTGCTTACCTTTGCAACTTTGTTAGCGGGAAAAAAGTTGAAATGCCTGGAGCTCTTCAGAAGCAACTCAAAAATTCTGATAATGCACGGGGTGGCCGATTACTCTCATATTCAGAACCAAGCATAATGGGGCTTAAAGAAATTGCGGATACTGTGTCCGCCCGTTTGAAGAGTGATGGTATCGTGCAAGATGATGTTCCCAAGTTGGAAGAGCCTCCAAGGAACCTGCTGAGGTCGGTGTCAACCAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

297

Amino Acids

32.2

Weight (kDa)

8.3

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 83 - 206 8.7e-46 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 38, 870
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 3 cut(s) 663, 782, 795
AclWI GGATC 2 cut(s) 133, 342
AcoI YGGCCR 2 cut(s) 241, 730
AcsI RAATTY 3 cut(s) 326, 454, 709
AcuI CTGAAG 2 cut(s) 92, 677
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 187, 457
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 5 cut(s) 121, 524, 608, 677, 805
AhdI GACNNNNNGTC 1 cut(s) 390
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 682
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 7 cut(s) 41, 60, 106, 275, 413, 570, 689
AluI AGCT 7 cut(s) 41, 60, 106, 275, 413, 570, 689
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 2 cut(s) 133, 342
AoxI GGCC 2 cut(s) 241, 730
ApeKI GCWGC 2 cut(s) 275, 368
ApoI RAATTY 3 cut(s) 326, 454, 709
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 243
BanII GRGCYC 1 cut(s) 691
Bbv12I GWGCWC 1 cut(s) 691
BbvCI CCTCAGC 1 cut(s) 866
BbvI GCAGC 2 cut(s) 262, 355
BccI CCATC 2 cut(s) 71, 806
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 684
BciVI GTATCC 2 cut(s) 391, 778
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 563
BfuAI ACCTGC 2 cut(s) 38, 870
BfuI GTATCC 2 cut(s) 391, 778
BisI GCNGC 2 cut(s) 276, 369
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 2 cut(s) 277, 370
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 1 cut(s) 28
BmeRI GACNNNNNGTC 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 29, 860
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 1 cut(s) 173
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 3 cut(s) 63, 537, 705
Bpu10I CCTNAGC 1 cut(s) 866
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 574
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 3 cut(s) 244, 282, 854
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 457
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 3 cut(s) 244, 282, 854
BseGI GGATG 3 cut(s) 63, 196, 466
BseLI CCNNNNNNNGG 2 cut(s) 187, 457
BseMII CTCAG 2 cut(s) 93, 857
BseXI GCAGC 2 cut(s) 262, 355
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 2 cut(s) 243, 732
BsiHKAI GWGCWC 1 cut(s) 691
BslI CCNNNNNNNGG 2 cut(s) 187, 457
BsmAI GTCTC 1 cut(s) 580
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 2 cut(s) 243, 732
Bso31I GGTCTC 1 cut(s) 580
Bsp1286I GDGCHC 1 cut(s) 691
Bsp143I GATC 5 cut(s) 96, 125, 334, 484, 538
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 3 cut(s) 663, 782, 795
BspANI GGCC 2 cut(s) 243, 732
BspCNI CTCAG 2 cut(s) 94, 858
BspLI GGNNCC 2 cut(s) 29, 860
BspMAI CTGCAG 1 cut(s) 567
BspMI ACCTGC 2 cut(s) 38, 870
BspPI GGATC 2 cut(s) 133, 342
BspQI GCTCTTC 2 cut(s) 696, 840
BspTNI GGTCTC 1 cut(s) 580
BssECI CCNNGG 3 cut(s) 244, 282, 854
BssMI GATC 5 cut(s) 96, 125, 334, 484, 538
BssT1I CCWWGG 3 cut(s) 244, 282, 854
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 4 cut(s) 217, 302, 403, 790
Bst6I CTCTTC 3 cut(s) 696, 800, 840
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 3 cut(s) 20, 102, 866
BstF5I GGATG 3 cut(s) 63, 196, 466
BstKTI GATC 5 cut(s) 99, 128, 337, 487, 541
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 5 cut(s) 96, 125, 334, 484, 538
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 682
BstSFI CTRYAG 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 262, 355
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 2 cut(s) 391, 778
BsuRI GGCC 2 cut(s) 243, 732
BtgZI GCGATG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 3 cut(s) 63, 196, 466
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 534
BveI ACCTGC 2 cut(s) 38, 870
Cac8I GCNNGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 221
CviAII CATG 2 cut(s) 307, 340
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 3 cut(s) 20, 102, 866
DpnI GATC 5 cut(s) 98, 127, 336, 486, 540
DpnII GATC 5 cut(s) 96, 125, 334, 484, 538
DraIII CACNNNGTG 1 cut(s) 728
DriI GACNNNNNGTC 1 cut(s) 390
EaeI YGGCCR 2 cut(s) 241, 730
Eam1104I CTCTTC 3 cut(s) 696, 800, 840
Eam1105I GACNNNNNGTC 1 cut(s) 390
EarI CTCTTC 3 cut(s) 696, 800, 840
EciI GGCGGA 1 cut(s) 784
Ecl136II GAGCTC 1 cut(s) 689
Eco130I CCWWGG 3 cut(s) 244, 282, 854
Eco24I GRGCYC 1 cut(s) 691
Eco31I GGTCTC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 92, 677
EcoICRI GAGCTC 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 682
EcoT14I CCWWGG 3 cut(s) 244, 282, 854
EcoT38I GRGCYC 1 cut(s) 691
ErhI CCWWGG 3 cut(s) 244, 282, 854
FaeI CATG 2 cut(s) 310, 343
FatI CATG 2 cut(s) 306, 339
FauI CCCGC 1 cut(s) 656
Fnu4HI GCNGC 2 cut(s) 276, 369
FokI GGATG 3 cut(s) 50, 203, 473
FriOI GRGCYC 1 cut(s) 691
Fsp4HI GCNGC 2 cut(s) 276, 369
FspBI CTAG 1 cut(s) 57
GluI GCNGC 2 cut(s) 276, 369
GsuI CTGGAG 3 cut(s) 63, 537, 705
HaeIII GGCC 2 cut(s) 243, 732
Hin1II CATG 2 cut(s) 310, 343
HincII GTYRAC 3 cut(s) 421, 560, 879
HindII GTYRAC 3 cut(s) 421, 560, 879
HinfI GANTC 3 cut(s) 149, 447, 556
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 421, 560, 879
Hpy188I TCNGA 7 cut(s) 91, 142, 154, 334, 696, 715, 751
Hpy188III TCNNGA 6 cut(s) 129, 395, 451, 542, 584, 605
Hpy8I GTNNAC 3 cut(s) 421, 560, 879
HpyAV CCTTC 3 cut(s) 41, 137, 310
HpyCH4III ACNGT 4 cut(s) 217, 302, 403, 790
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 7 cut(s) 10, 164, 206, 565, 651, 722, 823
HpyF3I CTNAG 3 cut(s) 20, 102, 866
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 2 cut(s) 310, 343
Kzo9I GATC 5 cut(s) 96, 125, 334, 484, 538
LguI GCTCTTC 2 cut(s) 696, 840
LmnI GCTCC 3 cut(s) 44, 65, 686
Lsp1109I GCAGC 2 cut(s) 262, 355
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 6 cut(s) 50, 248, 296, 302, 346, 373
MalI GATC 5 cut(s) 98, 127, 336, 486, 540
MboI GATC 5 cut(s) 96, 125, 334, 484, 538
MboII GAAGA 5 cut(s) 604, 620, 683, 817, 857
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 691
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 6 cut(s) 12, 326, 454, 498, 709, 777
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 822
MnlI CCTC 3 cut(s) 77, 861, 861
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 4 cut(s) 324, 501, 549, 771
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 684
NdeII GATC 5 cut(s) 96, 125, 334, 484, 538
NlaIII CATG 2 cut(s) 310, 343
NlaIV GGNNCC 2 cut(s) 29, 860
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PciSI GCTCTTC 2 cut(s) 696, 840
PcsI WCGNNNNNNNCGW 2 cut(s) 205, 730
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 149, 447
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 2 cut(s) 277, 370
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
PpuMI RGGWCCY 1 cut(s) 28
PscI ACATGT 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 691
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 2 cut(s) 29, 860
PspPI GGNCC 1 cut(s) 28
PspPPI RGGWCCY 1 cut(s) 28
PstI CTGCAG 1 cut(s) 567
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 691
SapI GCTCTTC 2 cut(s) 696, 840
SaqAI TTAA 4 cut(s) 324, 501, 549, 771
SatI GCNGC 2 cut(s) 276, 369
Sau3AI GATC 5 cut(s) 96, 125, 334, 484, 538
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 563
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
Sse9I AATT 6 cut(s) 12, 326, 454, 498, 709, 777
SsiI CCGC 3 cut(s) 663, 782, 795
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 3 cut(s) 244, 282, 854
TaaI ACNGT 4 cut(s) 217, 302, 403, 790
TaiI ACGT 1 cut(s) 96
TasI AATT 6 cut(s) 12, 326, 454, 498, 709, 777
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 2 cut(s) 149, 447
Tru1I TTAA 4 cut(s) 324, 501, 549, 771
Tru9I TTAA 4 cut(s) 324, 501, 549, 771
TscAI CASTG 2 cut(s) 297, 541
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 275, 368
Tsp45I GTSAC 1 cut(s) 346
TspRI CASTG 2 cut(s) 297, 541
Van91I CCANNNNNTGG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 3 cut(s) 326, 454, 709
XceI RCATGY 1 cut(s) 310
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.