Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003884

Physical Location & Seq

Genomic Coordinates Reverse (-)

52063938 .. 52080900

Gene Structure 16963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAATCACATTACCAAGGTTTTAGAGCTGGTAGAGAGCAACCCGGCCATTTCTTTGATAGAATTTGGTATATACCATCTAGATTTCGCAAATATGGGTGTTGCTTACCTTTGCAACTTTGTTGGTGGGAAAAAAGTTGAAATGCCTGGAGCTCTGCAGAAGCAACTTAAAAACTCTGATAATGCACGGGGTGGCCGATTACTCTCATATTCAGAACCAAGCATAATGATTGGGAGAGTATTATTTTCCCCTCTCTTGGGAAGTTCGTTTAAGCTTGTGAGCGGGGCTTTCACAGCATTATTTGCAGATGCAGTTGTATTCACGGTTGTATTGGCCATCATGTCTGCGCGTTATGTTGGAGATGCCAACATGATTGAGAAGGCATGGCATGGTGATCTGTCCCATTTGCTCGCTAAAGTCTTAGGACAAGGGCAGGCCAAGGGAAGGCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

151

Amino Acids

16.32

Weight (kDa)

9.33

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27000 AT2G02730 AT2G02730 AT2G02730
fragaria_vesca	FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_1g20311 FvH4_4g31870
malus_domestica	MD05G1007200.v1.1 MD13G1078200.v1.1 MD16G1077900.v1.1
prunus_persica	Prupe.1G268900_v2.0.a1
pyrus_communis	pycom13g06780 pycom13g06790 pycom16g06730
rosa_chinensis	RchiOBHm_Chr4g0440531
rosa_laevigata	RLG00000006171
rosa_multiflora	Rmu_sc0016635.1_g000001 Rmu_sc0037701.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381360
rosa_rugosa	Rorug04G0326500 Rorug04G0326600
rosa_samantha	Rh1AG290600 Rh2AG297000 Rh4AG378200 Rh4BG390800 Rh4CG405500 Rh4DG384500
rosa_wichuraiana	Rw0G013060 Rw2G026030 Rw4G032370 Rw4G032470 Rw7G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	282
AccII	CGCG	1 cut(s)	349
AciI	CCGC	1 cut(s)	282
AcoI	YGGCCR	3 cut(s)	45, 193, 333
AcsI	RAATTY	1 cut(s)	62
AdeI	CACNNNGTG	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	256, 257, 444
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	3 cut(s)	28, 152, 274
AluI	AGCT	3 cut(s)	28, 152, 274
Alw21I	GWGCWC	1 cut(s)	154
AoxI	GGCC	4 cut(s)	45, 193, 333, 435
ApoI	RAATTY	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	2 cut(s)	84, 344
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	44
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	44, 147
BmrFI	CCNGG	2 cut(s)	44, 147
BmsI	GCATC	2 cut(s)	298, 352
BpmI	CTGGAG	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	15, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 257, 444
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	15, 438
BseLI	CCNNNNNNNGG	3 cut(s)	256, 257, 444
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	4 cut(s)	47, 195, 335, 437
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	256, 257, 444
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	4 cut(s)	47, 195, 335, 437
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	4 cut(s)	47, 195, 335, 437
BspFNI	CGCG	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	159
BsrBI	CCGCTC	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	15, 438
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	2 cut(s)	15, 438
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	411, 435
BstDEI	CTNAG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 302
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	42, 145
BstSFI	CTRYAG	1 cut(s)	155
BstUI	CGCG	1 cut(s)	349
BsuRI	GGCC	4 cut(s)	47, 195, 335, 437
Cac8I	GCNNGC	2 cut(s)	411, 435
CfoI	GCGC	1 cut(s)	349
CviAII	CATG	4 cut(s)	340, 370, 384, 389
CviJI	RGCY	8 cut(s)	28, 47, 152, 195, 274, 287, 335, 437
CviKI_1	RGCY	8 cut(s)	28, 47, 152, 195, 274, 287, 335, 437
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
DraIII	CACNNNGTG	1 cut(s)	191
EaeI	YGGCCR	3 cut(s)	45, 193, 333
Ecl136II	GAGCTC	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	15, 438
Eco24I	GRGCYC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	15, 438
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	15, 438
FaeI	CATG	4 cut(s)	343, 373, 387, 392
FalI	AAGNNNNNCTT	1 cut(s)	436
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	4 cut(s)	339, 369, 383, 388
FauI	CCCGC	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	47, 195, 335, 437
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	343, 373, 387, 392
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	178, 214
Hpy188III	TCNNGA	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	373, 438
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	5 cut(s)	114, 157, 185, 305, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 302
HpyF3I	CTNAG	1 cut(s)	421
Hsp92II	CATG	4 cut(s)	343, 373, 387, 392
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	5 cut(s)	14, 57, 132, 159, 419
LweI	GCATC	2 cut(s)	298, 352
MaeI	CTAG	1 cut(s)	80
MalI	GATC	1 cut(s)	396
MbiI	CCGCTC	1 cut(s)	282
MboI	GATC	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	1 cut(s)	261
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	168, 270
Msp20I	TGGCCA	1 cut(s)	335
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	44, 147
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	293, 302
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	4 cut(s)	343, 373, 387, 392
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	4
Psp124BI	GAGCTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	168, 270
Sau3AI	GATC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	44, 147
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	6 cut(s)	21, 30, 111, 154, 276, 454
SfaNI	GCATC	2 cut(s)	298, 352
SfcI	CTRYAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	42, 145
StyI	CCWWGG	2 cut(s)	15, 438
TaaI	ACNGT	1 cut(s)	325
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	168, 270
Tru9I	TTAA	2 cut(s)	168, 270
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	62
XbaI	TCTAGA	1 cut(s)	79
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.