MD05G1007200.v1.1

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003884
Physical Location & Seq
Forward (+)
1708740 .. 1709387
648 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1007200.v1.1.491

Sequence Viewer

Length: 648 bp
ATGGCTATGCAGAGCGGAATAGGGGTTTCCAAGATCCTGATCTTAGCTGGGGCAGGGTATACTGGCACCATCCTTCTTAAGAACGGTAAATTATCCGAGCTGCTCGGAGATCTTCAGTCATTGTTAAATGGATCCGGGGAACACGCAGACGGTGACTATGATTCCCTCACAGCACAGATTAGCCGAATGACAGCTGAGATAAGGCAAATTGGCTCGTCGCGTGGCGGGGGAATGGTTTTTGTGAATGGGAACGGTAGCCAAATTGGTAATATGACATCACTAATAATGCCAGCAACTACCTTGGGAGCAGTGGGTTATGGATACATGTGGTGGAAGGGTCTAAAATTCTCAGATATGATGTATGTGACAAAGCGTGGTATGGCTACTGCTGTTGAGAACTTGACAAAAAATTTGGATAACGTGAAAAAGGCTGTTACTAAAGCAAAGAAACACCTGACGCAGAGAATTCGGCATGTGGATGACAAAATGGCAGAGCAAAATGAGCTTTCAAGGTCAATTAAGGAAGATGTTGCTGGAGTGCAACATTCTCTCACTGATATTGACTATGACTTGAGTAGATTGCAGAGCATGGTTTCTGGTTTGCAGCAGCTCAGGCTTTTTCAGAAGTTCAAAAGATGGAGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

216

Amino Acids

23.54

Weight (kDa)

9.57

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 89 - 202 3.2e-43 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 59
AccII CGCG 1 cut(s) 220
AciI CCGC 2 cut(s) 15, 225
AclWI GGATC 3 cut(s) 28, 126, 139
AcsI RAATTY 3 cut(s) 344, 409, 465
AcuI CTGAAG 1 cut(s) 98
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 510, 631
AluBI AGCT 5 cut(s) 47, 100, 194, 505, 610
AluI AGCT 5 cut(s) 47, 100, 194, 505, 610
AlwI GGATC 3 cut(s) 28, 126, 139
ApeKI GCWGC 3 cut(s) 100, 604, 607
ApoI RAATTY 3 cut(s) 344, 409, 465
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 164
BamHI GGATCC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 87, 616, 619
BccI CCATC 2 cut(s) 77, 630
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciVI GTATCC 1 cut(s) 314
BcnI CCSGG 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 77
BfuI GTATCC 1 cut(s) 314
BglII AGATCT 1 cut(s) 109
BisI GCNGC 3 cut(s) 101, 605, 608
BlsI GCNGC 3 cut(s) 102, 606, 609
Bme1390I CCNGG 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 67, 133
BmrFI CCNGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 611
BpuEI CTTGAG 1 cut(s) 592
BpuMI CCSGG 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 135, 300
Bse1I ACTGG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 135, 300
BseGI GGATG 2 cut(s) 69, 484
BseJI GATNNNNATC 1 cut(s) 38
BseMII CTCAG 3 cut(s) 186, 363, 625
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 3 cut(s) 87, 616, 619
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 135
Bsp143I GATC 4 cut(s) 33, 39, 109, 131
BspACI CCGC 2 cut(s) 15, 225
BspCNI CTCAG 3 cut(s) 187, 362, 624
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 67, 133
BspPI GGATC 3 cut(s) 28, 126, 139
BspT107I GGYRCC 1 cut(s) 65
BspTI CTTAAG 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 135, 300
BssMI GATC 4 cut(s) 33, 39, 109, 131
BssNAI GTATAC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 86, 152, 254
BstAFI CTTAAG 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 4 cut(s) 43, 195, 349, 611
BstF5I GGATG 2 cut(s) 69, 484
BstFNI CGCG 1 cut(s) 220
BstKTI GATC 4 cut(s) 36, 42, 112, 134
BstMBI GATC 4 cut(s) 33, 39, 109, 131
BstMWI GCNNNNNNNGC 2 cut(s) 502, 613
BstNSI RCATGY 2 cut(s) 328, 476
BstSCI CCNGG 1 cut(s) 134
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 3 cut(s) 87, 616, 619
BstX2I RGATCY 3 cut(s) 33, 109, 131
BstYI RGATCY 3 cut(s) 33, 109, 131
BstZ17I GTATAC 1 cut(s) 60
BsuI GTATCC 1 cut(s) 314
BtsCI GGATG 2 cut(s) 69, 484
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 315, 552
Cac8I GCNNGC 1 cut(s) 291
CseI GACGC 1 cut(s) 466
CviAII CATG 3 cut(s) 325, 473, 589
DdeI CTNAG 4 cut(s) 43, 195, 349, 611
DpnI GATC 4 cut(s) 35, 41, 111, 133
DpnII GATC 4 cut(s) 33, 39, 109, 131
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 328, 476, 592
FatI CATG 3 cut(s) 324, 472, 588
FauI CCCGC 1 cut(s) 218
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 101, 605, 608
FokI GGATG 2 cut(s) 56, 491
Fsp4HI GCNGC 3 cut(s) 101, 605, 608
GluI GCNGC 3 cut(s) 101, 605, 608
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 555
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 466
Hin1II CATG 3 cut(s) 328, 476, 592
HinfI GANTC 2 cut(s) 161, 640
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 4 cut(s) 97, 107, 352, 624
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 83, 328
HpyCH4III ACNGT 3 cut(s) 86, 152, 254
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 4 cut(s) 10, 541, 583, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 613
HpyF3I CTNAG 4 cut(s) 43, 195, 349, 611
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 3 cut(s) 328, 476, 592
Kzo9I GATC 4 cut(s) 33, 39, 109, 131
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 3 cut(s) 87, 616, 619
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 3 cut(s) 152, 364, 433
MalI GATC 4 cut(s) 35, 41, 111, 133
MbiI CCGCTC 1 cut(s) 15
MboI GATC 4 cut(s) 33, 39, 109, 131
MboII GAAGA 2 cut(s) 104, 536
MflI RGATCY 3 cut(s) 33, 109, 131
MluCI AATT 7 cut(s) 89, 207, 261, 344, 409, 465, 516
MnlI CCTC 1 cut(s) 176
MseI TTAA 4 cut(s) 78, 125, 519, 646
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 502, 613
NciI CCSGG 1 cut(s) 136
NdeII GATC 4 cut(s) 33, 39, 109, 131
NlaIII CATG 3 cut(s) 328, 476, 592
NlaIV GGNNCC 2 cut(s) 67, 133
NmuCI GTSAC 2 cut(s) 152, 364
NspI RCATGY 2 cut(s) 328, 476
PciI ACATGT 1 cut(s) 324
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 3 cut(s) 102, 606, 609
PscI ACATGT 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 67, 133
PsuI RGATCY 3 cut(s) 33, 109, 131
PvuII CAGCTG 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 4 cut(s) 78, 125, 519, 646
SatI GCNGC 3 cut(s) 101, 605, 608
Sau3AI GATC 4 cut(s) 33, 39, 109, 131
ScrFI CCNGG 1 cut(s) 136
SetI ASST 9 cut(s) 49, 102, 196, 302, 423, 456, 507, 515, 612
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 2 cut(s) 77, 571
SmoI CTYRAG 2 cut(s) 77, 571
Sse9I AATT 7 cut(s) 89, 207, 261, 344, 409, 465, 516
SsiI CCGC 2 cut(s) 15, 225
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 86, 152, 254
TaiI ACGT 1 cut(s) 423
TasI AATT 7 cut(s) 89, 207, 261, 344, 409, 465, 516
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 4 cut(s) 78, 125, 519, 646
Tru9I TTAA 4 cut(s) 78, 125, 519, 646
TscAI CASTG 2 cut(s) 315, 559
TseFI GTSAC 2 cut(s) 152, 364
TseI GCWGC 3 cut(s) 100, 604, 607
Tsp45I GTSAC 2 cut(s) 152, 364
TspRI CASTG 2 cut(s) 315, 559
Vha464I CTTAAG 1 cut(s) 77
XapI RAATTY 3 cut(s) 344, 409, 465
XceI RCATGY 2 cut(s) 328, 476
XmiI GTMKAC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.