AT2G03780

Translin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002960
Physical Location & Seq
Reverse (-)
1152446 .. 1154322
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03780.1

Sequence Viewer

Length: 864 bp
ATGTTGAGTTGTTCTTCATCGGCGTTCCAAAGAGTAGCCTTTATGCTTATGGCTCCCAAATTAAAACCTCAGAGACTCCATCAAATTGCAGAGAGTGGTGTTGAACATTTGGTTAAGAAAGCTAGGACGATGAGTACTGAATCCTCAATGAAAGATGCTTTCTCTACTTACGCTGATTATCTCAATAACTTCAATGAGAAGCGAGAAAGAGTGGTGAAGGTAAGTCGTGATATCACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAGGCTCAGTAAAGACAACAAAGAGGAGGTATTGGAGAAAGCAGGGAAGGATTTAGAAGCAGTGAGGGATCAACATTTTGCCCGGCTAATGAAAGAGCTTCAAGGGACTGATTTTTGGAAGCTGAGACGTGCTTATTCCCCAGGGGTGCAGGAATATGTTGAAGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGGACGCTATGTACTCTCGATGAGATTAACACAACGCTTGTACCACTTAGTGACCCTTCTTTAGAGCCGTTGCAGATCAATATCCTCGACTATATTCTTGGGCTTGCAGATTTGACGGGAGAGCTAATGCGGATGGCAATTGGTCGCATATCAGACGGTGAAATCGAATTCGCGCAGAGGATTTGTCAGTTTGTTCGACAGATTCATAGGGAACTAATGCTAGTTGTGCCAAAGATGGATGACAGTTATGACATGAAATCCAAGATGGAAGTGATGCTTCAAAGTGTGATCAAAATAGAGAACGCTTGCTTTAGCGTTCACGTGAGAGGATTAGAGTATATTCCACTGCTTGGAGATAATGCACCAACATCATACCTATTGGGAGCTGCTGATGTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

287

Amino Acids

32.7

Weight (kDa)

6.34

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 66 - 264 2.9e-57 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccB7I CCANNNNNTGG 1 cut(s) 812
AccII CGCG 1 cut(s) 635
AciI CCGC 1 cut(s) 592
AclI AACGTT 1 cut(s) 440
AclWI GGATC 1 cut(s) 345
AcsI RAATTY 1 cut(s) 629
AcvI CACGTG 1 cut(s) 784
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 3 cut(s) 136, 475, 504
AfiI CCNNNNNNNGG 1 cut(s) 812
AgsI TTSAA 5 cut(s) 104, 193, 371, 431, 743
AjiI CACGTC 1 cut(s) 398
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 6 cut(s) 122, 367, 391, 434, 586, 848
AluI AGCT 6 cut(s) 122, 367, 391, 434, 586, 848
Alw26I GTCTC 2 cut(s) 67, 388
AlwI GGATC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 434, 848
ApoI RAATTY 1 cut(s) 629
AspLEI GCGC 1 cut(s) 637
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 226, 632
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BbrPI CACGTG 1 cut(s) 784
BbvI GCAGC 2 cut(s) 421, 835
BccI CCATC 4 cut(s) 87, 589, 691, 721
BceAI ACGGC 1 cut(s) 514
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 750
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 67, 388
BfaI CTAG 2 cut(s) 123, 683
BisI GCNGC 2 cut(s) 435, 849
BlsI GCNGC 2 cut(s) 436, 850
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 352, 411
BmgBI CACGTC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 352, 411
BmsI GCATC 2 cut(s) 145, 726
BpuMI CCSGG 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 784
BsaBI GATNNNNATC 1 cut(s) 542
BsaJI CCNNGG 2 cut(s) 409, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 812
Bse8I GATNNNNATC 1 cut(s) 542
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 409, 410
BseGI GGATG 2 cut(s) 600, 706
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 1 cut(s) 812
BseMII CTCAG 3 cut(s) 83, 289, 383
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 421, 835
BsgI GTGCAG 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 635
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 2 cut(s) 388, 478
BslI CCNNNNNNNGG 1 cut(s) 812
BsmAI GTCTC 2 cut(s) 67, 388
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 388, 478
Bsp143I GATC 3 cut(s) 337, 537, 750
BspACI CCGC 1 cut(s) 592
BspCNI CTCAG 3 cut(s) 82, 288, 384
BspFNI CGCG 1 cut(s) 635
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 409, 410
BssMI GATC 3 cut(s) 337, 537, 750
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 620, 707
BstBAI YACGTR 1 cut(s) 784
BstC8I GCNNGC 2 cut(s) 567, 769
BstDEI CTNAG 4 cut(s) 69, 275, 392, 509
BstF5I GGATG 2 cut(s) 600, 706
BstFNI CGCG 1 cut(s) 635
BstHHI GCGC 1 cut(s) 637
BstKTI GATC 3 cut(s) 340, 540, 753
BstMAI GTCTC 2 cut(s) 67, 388
BstMBI GATC 3 cut(s) 337, 537, 750
BstMWI GCNNNNNNNGC 1 cut(s) 688
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 2 cut(s) 350, 409
BstUI CGCG 1 cut(s) 635
BstV1I GCAGC 2 cut(s) 421, 835
BtrI CACGTC 1 cut(s) 398
BtsCI GGATG 2 cut(s) 600, 706
BtsI GCAGTG 2 cut(s) 336, 806
BtsIMutI CAGTG 2 cut(s) 336, 806
Cac8I GCNNGC 2 cut(s) 567, 769
CfoI GCGC 1 cut(s) 637
CseI GACGC 1 cut(s) 475
Csp6I GTAC 3 cut(s) 135, 474, 503
CviAII CATG 1 cut(s) 715
CviQI GTAC 3 cut(s) 135, 474, 503
DdeI CTNAG 4 cut(s) 69, 275, 392, 509
DpnI GATC 3 cut(s) 339, 539, 752
DpnII GATC 3 cut(s) 337, 537, 750
DraIII CACNNNGTG 1 cut(s) 512
Eco32I GATATC 1 cut(s) 232
Eco72I CACGTG 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 409
EcoRV GATATC 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 1 cut(s) 718
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 2 cut(s) 388, 478
FatI CATG 1 cut(s) 714
FbaI TGATCA 1 cut(s) 750
Fnu4HI GCNGC 2 cut(s) 435, 849
FokI GGATG 2 cut(s) 607, 713
Fsp4HI GCNGC 2 cut(s) 435, 849
FspBI CTAG 2 cut(s) 123, 683
GlaI GCGC 1 cut(s) 636
GluI GCNGC 2 cut(s) 435, 849
HapII CCGG 1 cut(s) 352
HgaI GACGC 1 cut(s) 475
HhaI GCGC 1 cut(s) 637
Hin1II CATG 1 cut(s) 718
Hin6I GCGC 1 cut(s) 635
HinP1I GCGC 1 cut(s) 635
HinfI GANTC 3 cut(s) 75, 140, 664
HpaII CCGG 1 cut(s) 352
HphI GGTGA 2 cut(s) 226, 632
Hpy166II GTNNAC 2 cut(s) 268, 781
Hpy188I TCNGA 2 cut(s) 72, 616
Hpy188III TCNNGA 2 cut(s) 227, 479
Hpy8I GTNNAC 2 cut(s) 268, 781
HpyAV CCTTC 3 cut(s) 211, 310, 528
HpyCH4III ACNGT 2 cut(s) 620, 707
HpyCH4IV ACGT 3 cut(s) 397, 440, 783
HpyCH4V TGCA 6 cut(s) 89, 418, 437, 535, 569, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 688
HpyF3I CTNAG 4 cut(s) 69, 275, 392, 509
HpySE526I ACGT 3 cut(s) 397, 440, 783
Hsp92II CATG 1 cut(s) 718
HspAI GCGC 1 cut(s) 635
Ksp22I TGATCA 1 cut(s) 750
Kzo9I GATC 3 cut(s) 337, 537, 750
LmnI GCTCC 2 cut(s) 58, 845
LpnPI CCDG 8 cut(s) 248, 256, 297, 365, 396, 404, 423, 447
Lsp1109I GCAGC 2 cut(s) 421, 835
LweI GCATC 2 cut(s) 145, 726
MaeI CTAG 2 cut(s) 123, 683
MaeII ACGT 3 cut(s) 397, 440, 783
MaeIII GTNAC 1 cut(s) 512
MalI GATC 3 cut(s) 339, 539, 752
MboI GATC 3 cut(s) 337, 537, 750
MboII GAAGA 1 cut(s) 6
MfeI CAATTG 1 cut(s) 600
MluCI AATT 4 cut(s) 59, 84, 600, 629
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 8 cut(s) 78, 154, 286, 289, 327, 557, 633, 782
MseI TTAA 3 cut(s) 62, 114, 489
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 2 cut(s) 352, 411
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 635
MwoI GCNNNNNNNGC 1 cut(s) 688
NciI CCSGG 1 cut(s) 352
NdeII GATC 3 cut(s) 337, 537, 750
NlaIII CATG 1 cut(s) 718
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 512
PasI CCCWGGG 1 cut(s) 410
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PfeI GAWTC 2 cut(s) 140, 664
PflMI CCANNNNNTGG 1 cut(s) 812
PkrI GCNGC 2 cut(s) 436, 850
PleI GAGTC 1 cut(s) 69
PmaCI CACGTG 1 cut(s) 784
PmlI CACGTG 1 cut(s) 784
PpsI GAGTC 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 784
PsiI TTATAA 1 cut(s) 447
Psp1406I AACGTT 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 409
PspCI CACGTG 1 cut(s) 784
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 54
RsaI GTAC 3 cut(s) 136, 475, 504
RsaNI GTAC 3 cut(s) 135, 474, 503
SaqAI TTAA 3 cut(s) 62, 114, 489
SatI GCNGC 2 cut(s) 435, 849
Sau3AI GATC 3 cut(s) 337, 537, 750
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 352, 411
SfaNI GCATC 2 cut(s) 145, 726
Sse9I AATT 4 cut(s) 59, 84, 600, 629
SsiI CCGC 1 cut(s) 592
SspMI CTAG 2 cut(s) 123, 683
StyD4I CCNGG 2 cut(s) 350, 409
TaaI ACNGT 2 cut(s) 620, 707
TaiI ACGT 3 cut(s) 400, 443, 786
TaqI TCGA 5 cut(s) 480, 549, 627, 658, 858
TasI AATT 4 cut(s) 59, 84, 600, 629
TatI WGTACW 2 cut(s) 134, 473
TfiI GAWTC 2 cut(s) 140, 664
Tru1I TTAA 3 cut(s) 62, 114, 489
Tru9I TTAA 3 cut(s) 62, 114, 489
TscAI CASTG 2 cut(s) 336, 813
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 2 cut(s) 434, 848
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 6 cut(s) 6, 164, 254, 374, 656, 731
TspRI CASTG 2 cut(s) 336, 813
Van91I CCANNNNNTGG 1 cut(s) 812
XapI RAATTY 1 cut(s) 629
XspI CTAG 2 cut(s) 123, 683
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.