RchiOBHm_Chr3g0459611

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002960
Physical Location & Seq
Forward (+)
8006360 .. 8006530
171 bp
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UTR
Exon/CDS
Intron
PRQ42620

Sequence Viewer

Length: 171 bp
ATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCAATGTTCATGTTAGGGAATCAGAGTATATGCCTCTACTTGACTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

56

Amino Acids

6.37

Weight (kDa)

4.14

Isoelectric Point (pI)

81.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 4 - 32 5.8e-06 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 122, 135
AgsI TTSAA 2 cut(s) 47, 79
AlwI GGATC 2 cut(s) 122, 135
BaeGI GKGCMC 1 cut(s) 156
BamHI GGATCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 29
BciVI GTATCC 1 cut(s) 28
BfuI GTATCC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 156
BsmI GAATGC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 2 cut(s) 122, 135
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 73
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuI GTATCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 73
CviAII CATG 2 cut(s) 19, 86
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
FaeI CATG 2 cut(s) 22, 89
FaiI YATR 6 cut(s) 20, 87, 105, 107, 167, 169
FatI CATG 2 cut(s) 18, 85
FokI GGATG 1 cut(s) 17
Hin1II CATG 2 cut(s) 22, 89
HinfI GANTC 2 cut(s) 95, 119
Hpy188I TCNGA 2 cut(s) 100, 124
Hsp92II CATG 2 cut(s) 22, 89
Kzo9I GATC 1 cut(s) 127
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 34, 70
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 2 cut(s) 118, 120
Mva1269I GAATGC 1 cut(s) 73
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 22, 89
NlaIV GGNNCC 1 cut(s) 129
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 95
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 129
PsuI RGATCY 1 cut(s) 127
Sau3AI GATC 1 cut(s) 127
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 156
SgeI CNNG 5 cut(s) 31, 84, 98, 128, 136
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 35, 71, 74
TspRI CASTG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.