Rh4BG377800

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002960
Physical Location & Seq
Forward (+)
53290330 .. 53290968
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG377800.1

Sequence Viewer

Length: 639 bp
ATGCTAATTTACAGAGAAGGGAAGAATTCCTGCAATTGGAATAGGCCGGTTGTCTTCAAAGAACTGGCAGCGGTAAGCTTGGCCAAAGCTCAGGAAACTGCTGTGACGGATCACTTCGTGGCCTGGCTGGTTAAAGAGCTTCAAGGGACTGATTTTTGGAAGCTACGACGAGAATACTCGCCTGGGATACAAGAGTATGTTGAAGTTGCAACCTTCTGTAAATTTTGCAGGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACTTTGCTACCACTCAGTGATCCTTCTCTTGAGCCTTTGCAGATCAATGTCCTTAACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGGACATGTGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCGCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCATTGTTCATGTTAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

212

Amino Acids

24.1

Weight (kDa)

4.76

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 25 - 188 5.2e-41 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 71, 364, 463
AclWI GGATC 5 cut(s) 117, 281, 571, 590, 603
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 5 cut(s) 25, 221, 381, 401, 435
AdeI CACNNNGTG 2 cut(s) 118, 284
AfiI CCNNNNNNNGG 3 cut(s) 36, 469, 584
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 6 cut(s) 58, 143, 203, 247, 401, 515
AjnI CCWGG 2 cut(s) 122, 181
AluBI AGCT 5 cut(s) 78, 89, 139, 163, 358
AluI AGCT 5 cut(s) 78, 89, 139, 163, 358
AlwI GGATC 5 cut(s) 117, 281, 571, 590, 603
AoxI GGCC 3 cut(s) 44, 81, 120
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 5 cut(s) 25, 221, 381, 401, 435
AspA2I CCTAGG 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 231
AvrII CCTAGG 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 624
BaeI ACNNNNGTAYC 2 cut(s) 179, 212
BalI TGGCCA 1 cut(s) 83
BamHI GGATCC 1 cut(s) 595
BbsI GAAGAC 2 cut(s) 46, 497
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 124, 183
BciVI GTATCC 2 cut(s) 180, 496
BcnI CCSGG 1 cut(s) 235
BfaI CTAG 2 cut(s) 332, 455
BfuI GTATCC 2 cut(s) 180, 496
BisI GCNGC 1 cut(s) 69
BlnI CCTAGG 1 cut(s) 331
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 3 cut(s) 124, 183, 235
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 589, 597
BmrFI CCNGG 3 cut(s) 124, 183, 235
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 2 cut(s) 46, 497
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 2 cut(s) 90, 408
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 182, 331, 591
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 469, 584
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 69, 355, 624
BseBI CCWGG 2 cut(s) 124, 183
BseDI CCNNGG 3 cut(s) 182, 331, 591
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 36, 469, 584
BseMII CTCAG 3 cut(s) 104, 295, 399
BseNI ACTGG 3 cut(s) 69, 355, 624
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 3 cut(s) 46, 83, 122
BsiSI CCGG 2 cut(s) 47, 234
BslFI GGGAC 2 cut(s) 160, 250
BslI CCNNNNNNNGG 3 cut(s) 36, 469, 584
BsmFI GGGAC 2 cut(s) 160, 250
BsmI GAATGC 2 cut(s) 268, 541
BsnI GGCC 3 cut(s) 46, 83, 122
Bsp1286I GDGCHC 1 cut(s) 624
Bsp143I GATC 5 cut(s) 109, 286, 309, 563, 595
BspACI CCGC 3 cut(s) 71, 364, 463
BspANI GGCC 3 cut(s) 46, 83, 122
BspCNI CTCAG 3 cut(s) 103, 294, 400
BspLI GGNNCC 2 cut(s) 589, 597
BspPI GGATC 5 cut(s) 117, 281, 571, 590, 603
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 3 cut(s) 69, 355, 624
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 3 cut(s) 182, 331, 591
BssMI GATC 5 cut(s) 109, 286, 309, 563, 595
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 124, 183
BstC8I GCNNGC 2 cut(s) 339, 541
BstDEI CTNAG 3 cut(s) 90, 281, 408
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 5 cut(s) 112, 289, 312, 566, 598
BstMBI GATC 5 cut(s) 109, 286, 309, 563, 595
BstNI CCWGG 2 cut(s) 124, 183
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 3 cut(s) 122, 181, 233
BstSLI GKGCMC 1 cut(s) 624
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 2 cut(s) 46, 497
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 2 cut(s) 180, 496
BsuRI GGCC 3 cut(s) 46, 83, 122
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 289, 631
Cac8I GCNNGC 2 cut(s) 339, 541
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 231
CviAII CATG 3 cut(s) 415, 487, 554
DdeI CTNAG 3 cut(s) 90, 281, 408
DpnI GATC 5 cut(s) 111, 288, 311, 565, 597
DpnII GATC 5 cut(s) 109, 286, 309, 563, 595
DraIII CACNNNGTG 2 cut(s) 118, 284
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 122, 181
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 3 cut(s) 418, 490, 557
FaiI YATR 9 cut(s) 198, 416, 470, 488, 555, 573, 575, 635, 637
FaqI GGGAC 2 cut(s) 160, 250
FatI CATG 3 cut(s) 414, 486, 553
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 332, 455
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 3 cut(s) 46, 83, 122
HapII CCGG 2 cut(s) 47, 234
Hin1II CATG 3 cut(s) 418, 490, 557
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 2 cut(s) 238, 247
HpaII CCGG 2 cut(s) 47, 234
HphI GGTGA 1 cut(s) 404
Hpy188I TCNGA 3 cut(s) 388, 568, 592
Hpy188III TCNNGA 3 cut(s) 92, 251, 296
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 11, 223, 300
HpyCH4V TGCA 6 cut(s) 33, 209, 228, 307, 341, 420
HpyF3I CTNAG 3 cut(s) 90, 281, 408
Hsp92II CATG 3 cut(s) 418, 490, 557
Kzo9I GATC 5 cut(s) 109, 286, 309, 563, 595
LmnI GCTCC 1 cut(s) 593
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 351
MaeI CTAG 2 cut(s) 332, 455
MaeIII GTNAC 1 cut(s) 103
MalI GATC 5 cut(s) 111, 288, 311, 565, 597
MboI GATC 5 cut(s) 109, 286, 309, 563, 595
MboII GAAGA 4 cut(s) 34, 46, 502, 538
MfeI CAATTG 2 cut(s) 34, 372
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 624
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 8 cut(s) 6, 25, 34, 221, 372, 381, 401, 435
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 4 cut(s) 403, 554, 586, 588
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 2 cut(s) 132, 321
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 47, 234
MspR9I CCNGG 3 cut(s) 124, 183, 235
MunI CAATTG 2 cut(s) 34, 372
Mva1269I GAATGC 2 cut(s) 268, 541
MvaI CCWGG 2 cut(s) 124, 183
NciI CCSGG 1 cut(s) 235
NdeII GATC 5 cut(s) 109, 286, 309, 563, 595
NlaIII CATG 3 cut(s) 418, 490, 557
NlaIV GGNNCC 2 cut(s) 589, 597
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 418
PciI ACATGT 1 cut(s) 414
PctI GAATGC 2 cut(s) 268, 541
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PscI ACATGT 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 122, 181
PspGI CCWGG 2 cut(s) 122, 181
PspN4I GGNNCC 2 cut(s) 589, 597
PspPI GGNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 595
SaqAI TTAA 2 cut(s) 132, 321
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 5 cut(s) 109, 286, 309, 563, 595
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 3 cut(s) 124, 183, 235
SduI GDGCHC 1 cut(s) 624
SetI ASST 6 cut(s) 80, 91, 141, 165, 215, 360
SfaNI GCATC 1 cut(s) 351
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 8 cut(s) 6, 25, 34, 221, 372, 381, 401, 435
SsiI CCGC 3 cut(s) 71, 364, 463
SspMI CTAG 2 cut(s) 332, 455
StyD4I CCNGG 3 cut(s) 122, 181, 233
StyI CCWWGG 1 cut(s) 331
TaqI TCGA 1 cut(s) 379
TasI AATT 8 cut(s) 6, 25, 34, 221, 372, 381, 401, 435
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 132, 321
Tru9I TTAA 2 cut(s) 132, 321
TscAI CASTG 2 cut(s) 289, 631
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 5 cut(s) 275, 503, 535, 539, 542
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 2 cut(s) 289, 631
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 5 cut(s) 25, 221, 381, 401, 435
XceI RCATGY 1 cut(s) 418
XmaJI CCTAGG 1 cut(s) 331
XspI CTAG 2 cut(s) 332, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.