MD13G1056700.v1.1

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0002960
Physical Location & Seq
Forward (+)
3953873 .. 3956544
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1056700.v1.1.491

Sequence Viewer

Length: 753 bp
ATGGCGACGACGATGAGCACCGAATCCTCCTCCATGAAAGACGCCTTCTCCAAACACGCCGATTACCTCAACAATCTCAACGACAAGCGGGAAAGGGTCGTAAAAGCAAGTCGCGATATCACCATTAACAGCAAAAAGGTCATCTTTCAGGTCCACAGAATCAGTAAACACAACAAAGAGGAAGTTCTGCAGAAAGCCGAAAAGGATTTAGTAGCTGTGACGGATCGGTACATTTCCCGACTGGTTAGAGAGCTGCAGGGGACTGATTTTTGGAAGCTGAGACGAGCATACTCACCTGGGGTACAAGAATATGTTGAAGCTGCAACCTTTTGTAAATTTTGCAGGACTGGGACTCTTTTAAGTCTTGATGAGATAAATGCCACCTTGCTGCCACTCAGTGATCCGTCTCTTGAGCCGTTGCAGATCAATGTACTTGACTATCTTCTCGGGCTTGCAGACTTGACCGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGAGAACGTGAATTTGCTGATAAGATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCATGTTGTCCCACTTATGGATGATAGCAGTGACATGAAGCTGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAAAATGCTTGCTTTGGTGATCATGTGAGAAGATCAGAGTATATGCCACTACCTGGCTCTGACGATCAAACTTCGTTCTTATTGGCAGTGCCCGATGTTGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

251

Amino Acids

28.52

Weight (kDa)

5.64

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 28 - 225 3.1e-56 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 1 cut(s) 114
AciI CCGC 2 cut(s) 88, 478
AclWI GGATC 2 cut(s) 231, 395
AcsI RAATTY 4 cut(s) 335, 495, 515, 549
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 3 cut(s) 230, 303, 432
AfiI CCNNNNNNNGG 2 cut(s) 583, 698
AgsI TTSAA 3 cut(s) 317, 629, 746
AjnI CCWGG 2 cut(s) 295, 697
AluBI AGCT 6 cut(s) 215, 253, 277, 320, 472, 607
AluI AGCT 6 cut(s) 215, 253, 277, 320, 472, 607
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 274, 411
AlwI GGATC 2 cut(s) 231, 395
Ama87I CYCGRG 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 253, 320, 388
ApoI RAATTY 4 cut(s) 335, 495, 515, 549
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 112, 285, 674
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 240, 307, 375
BccI CCATC 1 cut(s) 497
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 2 cut(s) 297, 699
BciVI GTATCC 1 cut(s) 610
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 274, 411
BfmI CTRYAG 2 cut(s) 188, 254
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 3 cut(s) 254, 321, 389
BlsI GCNGC 3 cut(s) 255, 322, 390
Bme1390I CCNGG 2 cut(s) 297, 699
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 151
BmrFI CCNGG 2 cut(s) 297, 699
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 465
BmuI ACTGGG 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 583, 698
Bse1I ACTGG 2 cut(s) 246, 352
BseBI CCWGG 2 cut(s) 297, 699
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 2 cut(s) 583, 698
BseMII CTCAG 2 cut(s) 269, 409
BseNI ACTGG 2 cut(s) 246, 352
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 738
BseXI GCAGC 3 cut(s) 240, 307, 375
Bsh1236I CGCG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 3 cut(s) 274, 364, 560
BslI CCNNNNNNNGG 2 cut(s) 583, 698
BsmAI GTCTC 2 cut(s) 274, 411
BsmBI CGTCTC 2 cut(s) 274, 411
BsmFI GGGAC 3 cut(s) 274, 364, 560
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 20, 738
Bsp143I GATC 6 cut(s) 223, 400, 423, 664, 677, 709
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 2 cut(s) 88, 478
BspCNI CTCAG 2 cut(s) 270, 408
BspFNI CGCG 1 cut(s) 114
BspMAI CTGCAG 2 cut(s) 192, 258
BspPI GGATC 2 cut(s) 231, 395
BsrI ACTGG 2 cut(s) 246, 352
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 6 cut(s) 223, 400, 423, 664, 677, 709
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 2 cut(s) 297, 699
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 453, 655
BstDEI CTNAG 2 cut(s) 278, 395
BstF5I GGATG 1 cut(s) 592
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 6 cut(s) 226, 403, 426, 667, 680, 712
BstMAI GTCTC 2 cut(s) 274, 411
BstMBI GATC 6 cut(s) 223, 400, 423, 664, 677, 709
BstNI CCWGG 2 cut(s) 297, 699
BstSCI CCNGG 2 cut(s) 295, 697
BstSFI CTRYAG 2 cut(s) 188, 254
BstSLI GKGCMC 1 cut(s) 738
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 240, 307, 375
BsuI GTATCC 1 cut(s) 610
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 2 cut(s) 601, 738
BtsIMutI CAGTG 3 cut(s) 403, 601, 738
BtuMI TCGCGA 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 453, 655
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 50
Csp6I GTAC 3 cut(s) 229, 302, 431
CviAII CATG 4 cut(s) 34, 569, 601, 668
CviQI GTAC 3 cut(s) 229, 302, 431
DdeI CTNAG 2 cut(s) 278, 395
DpnI GATC 6 cut(s) 225, 402, 425, 666, 679, 711
DpnII GATC 6 cut(s) 223, 400, 423, 664, 677, 709
DraIII CACNNNGTG 1 cut(s) 398
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 295, 697
EcoRV GATATC 1 cut(s) 118
Esp3I CGTCTC 2 cut(s) 274, 411
FaeI CATG 4 cut(s) 37, 572, 604, 671
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 3 cut(s) 274, 364, 560
FatI CATG 4 cut(s) 33, 568, 600, 667
FauI CCCGC 1 cut(s) 81
FbaI TGATCA 1 cut(s) 664
Fnu4HI GCNGC 3 cut(s) 254, 321, 389
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 3 cut(s) 254, 321, 389
GluI GCNGC 3 cut(s) 254, 321, 389
HapII CCGG 1 cut(s) 465
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 37, 572, 604, 671
HinfI GANTC 3 cut(s) 23, 159, 352
HpaII CCGG 1 cut(s) 465
HphI GGTGA 3 cut(s) 112, 285, 674
Hpy166II GTNNAC 2 cut(s) 154, 167
Hpy188I TCNGA 3 cut(s) 502, 682, 706
Hpy188III TCNNGA 4 cut(s) 113, 237, 365, 410
Hpy8I GTNNAC 2 cut(s) 154, 167
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 7 cut(s) 190, 256, 323, 342, 421, 455, 534
HpyF3I CTNAG 2 cut(s) 278, 395
HpySE526I ACGT 1 cut(s) 511
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 37, 572, 604, 671
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 6 cut(s) 223, 400, 423, 664, 677, 709
Lsp1109I GCAGC 3 cut(s) 240, 307, 375
LweI GCATC 1 cut(s) 465
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 2 cut(s) 217, 596
MalI GATC 6 cut(s) 225, 402, 425, 666, 679, 711
MboI GATC 6 cut(s) 223, 400, 423, 664, 677, 709
MboII GAAGA 3 cut(s) 434, 652, 687
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 20, 738
MluCI AATT 5 cut(s) 335, 486, 495, 515, 549
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 4 cut(s) 37, 40, 77, 172
MseI TTAA 2 cut(s) 126, 359
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 297, 699
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 2 cut(s) 297, 699
MvnI CGCG 1 cut(s) 114
NdeII GATC 6 cut(s) 223, 400, 423, 664, 677, 709
NlaIII CATG 4 cut(s) 37, 572, 604, 671
NmuCI GTSAC 2 cut(s) 217, 596
NruI TCGCGA 1 cut(s) 114
PfeI GAWTC 2 cut(s) 23, 159
PflMI CCANNNNNTGG 1 cut(s) 698
PkrI GCNGC 3 cut(s) 255, 322, 390
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 295, 697
PspGI CCWGG 2 cut(s) 295, 697
PspPI GGNCC 1 cut(s) 151
PstI CTGCAG 2 cut(s) 192, 258
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 3 cut(s) 230, 303, 432
RsaNI GTAC 3 cut(s) 229, 302, 431
SaqAI TTAA 2 cut(s) 126, 359
SatI GCNGC 3 cut(s) 254, 321, 389
Sau3AI GATC 6 cut(s) 223, 400, 423, 664, 677, 709
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 297, 699
SduI GDGCHC 2 cut(s) 20, 738
SfaNI GCATC 1 cut(s) 465
SfcI CTRYAG 2 cut(s) 188, 254
SinI GGWCC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 5 cut(s) 335, 486, 495, 515, 549
SsiI CCGC 2 cut(s) 88, 478
StyD4I CCNGG 2 cut(s) 295, 697
TaiI ACGT 1 cut(s) 514
TaqI TCGA 1 cut(s) 493
TasI AATT 5 cut(s) 335, 486, 495, 515, 549
TatI WGTACW 1 cut(s) 430
TfiI GAWTC 2 cut(s) 23, 159
Tru1I TTAA 2 cut(s) 126, 359
Tru9I TTAA 2 cut(s) 126, 359
TscAI CASTG 3 cut(s) 403, 601, 738
TseFI GTSAC 2 cut(s) 217, 596
TseI GCWGC 3 cut(s) 253, 320, 388
Tsp45I GTSAC 2 cut(s) 217, 596
TspDTI ATGAA 3 cut(s) 50, 617, 653
TspGWI ACGGA 2 cut(s) 236, 393
TspRI CASTG 3 cut(s) 403, 601, 738
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 4 cut(s) 335, 495, 515, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.