Rroxscaffold_5G00378550

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002960
Physical Location & Seq
Forward (+)
59007150 .. 59009338
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378550.1

Sequence Viewer

Length: 879 bp
ATGTTGCAGCGCTACGCATTATTGCAGAGGATTTCAGTGATGGCTCTCAAACCCCACCGCCTCCATAACCTCGCCGATACGACGTCGCTTGGCGTAGCAAAGAGGGCAAGAACAATGGCCACCGAATCCTCCTCCTCCTCCTCTTCCTCCTCTATGAAAGACGCCTTCACCCAATACGCCGATTACCTCAATAACCAAAATGATAAACGTGAAAGAATCGTCAAAGCGAGTCGGGATATCACCATGAACAGCAAAAAGGTCATCTTTCAAGTCCACAGAATGAGCAAGCACAACAGAGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATCAGTTCGTGGCCCGGCTGGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTACGACGAGCGTACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACTTTGCTACCACTTAGTGATCCGTCTCTTGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTGGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTAGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCAGTGTTCATGTCAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTATTGGGAGTGCCCAGTGTTGATATATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

292

Amino Acids

33.28

Weight (kDa)

6.02

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 68 - 266 4.9e-59 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AciI CCGC 3 cut(s) 58, 333, 598
AclWI GGATC 5 cut(s) 351, 515, 805, 824, 837
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 4 cut(s) 455, 615, 635, 669
AcuI CTGAAG 1 cut(s) 763
AcyI GRCGYC 2 cut(s) 83, 162
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 2 cut(s) 410, 431
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 3 cut(s) 703, 818, 846
AgsI TTSAA 5 cut(s) 269, 437, 481, 635, 749
AjnI CCWGG 2 cut(s) 415, 564
AluBI AGCT 4 cut(s) 373, 397, 440, 592
AluI AGCT 4 cut(s) 373, 397, 440, 592
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 5 cut(s) 351, 515, 805, 824, 837
Aor51HI AGCGCT 1 cut(s) 11
AoxI GGCC 2 cut(s) 117, 354
ApeKI GCWGC 3 cut(s) 7, 373, 440
ApoI RAATTY 4 cut(s) 455, 615, 635, 669
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 355, 465
AsuC2I CCSGG 2 cut(s) 358, 469
AsuHPI GGTGA 3 cut(s) 160, 232, 638
AvaII GGWCC 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 857
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BalI TGGCCA 1 cut(s) 119
BamHI GGATCC 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 731
BbvI GCAGC 3 cut(s) 19, 360, 427
BccI CCATC 2 cut(s) 34, 617
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 2 cut(s) 417, 566
BciVI GTATCC 2 cut(s) 414, 730
BcnI CCSGG 2 cut(s) 358, 469
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 1 cut(s) 689
BfmI CTRYAG 2 cut(s) 308, 460
BfoI RGCGCY 1 cut(s) 13
BfuI GTATCC 2 cut(s) 414, 730
BisI GCNGC 4 cut(s) 8, 333, 374, 441
BlsI GCNGC 4 cut(s) 9, 334, 375, 442
Bme1390I CCNGG 4 cut(s) 358, 417, 469, 566
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 2 cut(s) 355, 465
BmiI GGNNCC 2 cut(s) 823, 831
BmrFI CCNGG 4 cut(s) 358, 417, 469, 566
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 2 cut(s) 585, 862
BmuI ACTGGG 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 731
BpmI CTGGAG 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 2 cut(s) 358, 469
BsaHI GRCGYC 2 cut(s) 83, 162
BsaJI CCNNGG 3 cut(s) 416, 565, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 703, 818, 846
Bse1I ACTGG 2 cut(s) 589, 857
BseBI CCWGG 2 cut(s) 417, 566
BseDI CCNNGG 3 cut(s) 416, 565, 825
BseGI GGATG 1 cut(s) 712
BseLI CCNNNNNNNGG 3 cut(s) 703, 818, 846
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 2 cut(s) 589, 857
BseRI GAGGAG 6 cut(s) 121, 124, 127, 130, 139, 314
BseSI GKGCMC 1 cut(s) 857
BseXI GCAGC 3 cut(s) 19, 360, 427
BshFI GGCC 2 cut(s) 119, 356
BsiSI CCGG 2 cut(s) 358, 468
BslFI GGGAC 3 cut(s) 394, 484, 680
BslI CCNNNNNNNGG 3 cut(s) 703, 818, 846
BsmAI GTCTC 1 cut(s) 531
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 3 cut(s) 394, 484, 680
BsmI GAATGC 2 cut(s) 502, 775
BsnI GGCC 2 cut(s) 119, 356
Bsp1286I GDGCHC 1 cut(s) 857
Bsp143I GATC 5 cut(s) 343, 520, 543, 797, 829
BspACI CCGC 3 cut(s) 58, 333, 598
BspANI GGCC 2 cut(s) 119, 356
BspCNI CTCAG 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 823, 831
BspMAI CTGCAG 2 cut(s) 312, 464
BspPI GGATC 5 cut(s) 351, 515, 805, 824, 837
BsrI ACTGG 2 cut(s) 589, 857
BssECI CCNNGG 3 cut(s) 416, 565, 825
BssMI GATC 5 cut(s) 343, 520, 543, 797, 829
BssNI GRCGYC 2 cut(s) 83, 162
Bst2UI CCWGG 2 cut(s) 417, 566
Bst6I CTCTTC 1 cut(s) 148
BstACI GRCGYC 2 cut(s) 83, 162
BstC8I GCNNGC 3 cut(s) 287, 573, 775
BstDEI CTNAG 2 cut(s) 515, 642
BstF5I GGATG 1 cut(s) 712
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 5 cut(s) 346, 523, 546, 800, 832
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 5 cut(s) 343, 520, 543, 797, 829
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 2 cut(s) 417, 566
BstSCI CCNGG 4 cut(s) 356, 415, 467, 564
BstSFI CTRYAG 2 cut(s) 308, 460
BstSLI GKGCMC 1 cut(s) 857
BstV1I GCAGC 3 cut(s) 19, 360, 427
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BsuI GTATCC 2 cut(s) 414, 730
BsuRI GGCC 2 cut(s) 119, 356
BtsCI GGATG 1 cut(s) 712
BtsIMutI CAGTG 3 cut(s) 42, 787, 864
Cac8I GCNNGC 3 cut(s) 287, 573, 775
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 355, 465
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 409, 430
CviAII CATG 3 cut(s) 244, 721, 788
CviQI GTAC 2 cut(s) 409, 430
DdeI CTNAG 2 cut(s) 515, 642
DpnI GATC 5 cut(s) 345, 522, 545, 799, 831
DpnII GATC 5 cut(s) 343, 520, 543, 797, 829
DraIII CACNNNGTG 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 465
Eco47III AGCGCT 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 415, 564
EcoRV GATATC 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 3 cut(s) 247, 724, 791
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 3 cut(s) 394, 484, 680
FatI CATG 3 cut(s) 243, 720, 787
FauNDI CATATG 1 cut(s) 650
Fnu4HI GCNGC 4 cut(s) 8, 333, 374, 441
FokI GGATG 1 cut(s) 719
Fsp4HI GCNGC 4 cut(s) 8, 333, 374, 441
FspBI CTAG 1 cut(s) 689
GlaI GCGC 1 cut(s) 11
GluI GCNGC 4 cut(s) 8, 333, 374, 441
GsuI CTGGAG 1 cut(s) 606
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 2 cut(s) 119, 356
HapII CCGG 2 cut(s) 358, 468
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 2 cut(s) 83, 162
Hin1II CATG 3 cut(s) 247, 724, 791
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 5 cut(s) 125, 216, 229, 472, 481
HpaII CCGG 2 cut(s) 358, 468
HphI GGTGA 3 cut(s) 160, 232, 638
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 622, 794, 802, 826
Hpy188III TCNNGA 3 cut(s) 233, 485, 530
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 3 cut(s) 85, 88, 405
HpyAV CCTTC 2 cut(s) 175, 457
HpyCH4IV ACGT 3 cut(s) 83, 208, 432
HpyCH4V TGCA 9 cut(s) 7, 25, 310, 376, 443, 462, 541, 575, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 515, 642
HpySE526I ACGT 3 cut(s) 83, 208, 432
Hsp92I GRCGYC 2 cut(s) 83, 162
Hsp92II CATG 3 cut(s) 247, 724, 791
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 5 cut(s) 343, 520, 543, 797, 829
LmnI GCTCC 1 cut(s) 827
Lsp1109I GCAGC 3 cut(s) 19, 360, 427
LweI GCATC 2 cut(s) 585, 862
MaeI CTAG 1 cut(s) 689
MaeII ACGT 3 cut(s) 83, 208, 432
MaeIII GTNAC 1 cut(s) 337
MalI GATC 5 cut(s) 345, 522, 545, 799, 831
MboI GATC 5 cut(s) 343, 520, 543, 797, 829
MboII GAAGA 3 cut(s) 135, 736, 772
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 1 cut(s) 857
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 5 cut(s) 455, 606, 615, 635, 669
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 238, 466
MmeI TCCRAC 1 cut(s) 857
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 2 cut(s) 358, 468
MspR9I CCNGG 4 cut(s) 358, 417, 469, 566
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 2 cut(s) 502, 775
MvaI CCWGG 2 cut(s) 417, 566
MwoI GCNNNNNNNGC 1 cut(s) 104
NciI CCSGG 2 cut(s) 358, 469
NdeI CATATG 1 cut(s) 650
NdeII GATC 5 cut(s) 343, 520, 543, 797, 829
NlaIII CATG 3 cut(s) 247, 724, 791
NlaIV GGNNCC 2 cut(s) 823, 831
NmuCI GTSAC 1 cut(s) 337
PctI GAATGC 2 cut(s) 502, 775
PfeI GAWTC 3 cut(s) 125, 216, 481
PkrI GCNGC 4 cut(s) 9, 334, 375, 442
PleI GAGTC 2 cut(s) 237, 466
PpsI GAGTC 2 cut(s) 237, 466
Psp6I CCWGG 2 cut(s) 415, 564
PspGI CCWGG 2 cut(s) 415, 564
PspN4I GGNNCC 2 cut(s) 823, 831
PspPI GGNCC 2 cut(s) 355, 465
PstI CTGCAG 2 cut(s) 312, 464
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 2 cut(s) 410, 431
RsaNI GTAC 2 cut(s) 409, 430
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 4 cut(s) 8, 333, 374, 441
Sau3AI GATC 5 cut(s) 343, 520, 543, 797, 829
Sau96I GGNCC 2 cut(s) 355, 465
SchI GAGTC 2 cut(s) 238, 466
ScrFI CCNGG 4 cut(s) 358, 417, 469, 566
SduI GDGCHC 1 cut(s) 857
SfaNI GCATC 2 cut(s) 585, 862
SfcI CTRYAG 2 cut(s) 308, 460
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 5 cut(s) 455, 606, 615, 635, 669
SsiI CCGC 3 cut(s) 58, 333, 598
SspMI CTAG 1 cut(s) 689
StyD4I CCNGG 4 cut(s) 356, 415, 467, 564
TaiI ACGT 3 cut(s) 86, 211, 435
TasI AATT 5 cut(s) 455, 606, 615, 635, 669
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 3 cut(s) 125, 216, 481
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 3 cut(s) 42, 787, 864
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 3 cut(s) 7, 373, 440
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 6 cut(s) 170, 260, 509, 737, 773, 776
TspGWI ACGGA 2 cut(s) 356, 513
TspRI CASTG 3 cut(s) 42, 787, 864
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 4 cut(s) 455, 615, 635, 669
XspI CTAG 1 cut(s) 689
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.