Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000087.1

Orthogroup ID

OG0002960

Physical Location & Seq

Genomic Coordinates Forward (+)

259070 .. 259734

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000087.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgtcctcatggattgaatctgtgggatatatgctaatttacagagaaggggagaattcctgcaattggaataggctagttgtcttcgaagaactagcagcggtaagctttgccaaagcacaggaaaccgccgtgacgggtcagaccgggactcttttgaatcttgatgagatgaatgctactttgctaccactcagtgatccgtctcttgagcctttgcagatcaatgtctttgactatctcctagggcttgcagatttgactagagagctgatgcggttggcaattggtcgaatttcagatggtgaagttgaatttgctgaggacatatgcaagtttgtgcgtgaaatttacaatgaactgaccctagttgtcccctttatggatgatagtaatgacatgaagacgaaaatggatacaatgcttcaaagtgtaatgaagatagagaatgcttgcttcagtgttcatgttagagaatcagagtatatgcctctacttggctccgaggatccaacttcctttttattgggagtgcccagtgttgatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

183

Amino Acids

20.56

Weight (kDa)

4.18

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03780 AT2G03780 AT2G03780
fragaria_vesca	FvH4_4g29320 FvH4_4g29320
malus_domestica	MD13G1056700.v1.1 MD16G1056000.v1.1
prunus_persica	Prupe.1G293300_v2.0.a1 Prupe.1G293300_v2.0.a1
pyrus_communis	pycom16g04880
rosa_chinensis	RchiOBHm_Chr3g0459601 RchiOBHm_Chr3g0459611 RchiOBHm_Chr4g0437361
rosa_laevigata	RLG00000006441
rosa_multiflora	Rmu_sc0004759.1_g000014 Rmu_sc0034128.1_g000001 Rmu_ssc0000087.1_g000062
rosa_roxburghii	Rroxscaffold_2G00092570 Rroxscaffold_5G00378550 Rroxscaffold_7G00174990
rosa_rugosa	Rorug01G0449100 Rorug04G0300700 Rorug04G0300800 Rorug04G0300800 Rorug04G0300900 Rorug04G0315600 Rorug05G0011200
rosa_samantha	Rh2BG219700 Rh3CG281200 Rh4BG365200 Rh4BG377800 Rh4CG379400 Rh4CG391900 Rh6BG022300 Rh6BG380600
rosa_wichuraiana	Rw3G022430 Rw4G031130 Rw4G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	101, 129, 277
AclWI	GGATC	3 cut(s)	194, 503, 516
AcsI	RAATTY	4 cut(s)	55, 294, 314, 348
AcuI	CTGAAG	1 cut(s)	442
AdeI	CACNNNGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	66, 382, 497
AgsI	TTSAA	4 cut(s)	17, 160, 314, 428
AluBI	AGCT	2 cut(s)	108, 271
AluI	AGCT	2 cut(s)	108, 271
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	3 cut(s)	194, 503, 516
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	4 cut(s)	55, 294, 314, 348
AspA2I	CCTAGG	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	87
AvrII	CCTAGG	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	537
BamHI	GGATCC	1 cut(s)	508
BbsI	GAAGAC	2 cut(s)	76, 410
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	5 cut(s)	77, 95, 245, 264, 368
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	1 cut(s)	99
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	502, 510
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	531
BpiI	GAAGAC	2 cut(s)	76, 410
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	244, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 382, 497
Bse1I	ACTGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	244, 504
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	66, 382, 497
BseMII	CTCAG	2 cut(s)	208, 312
BseNI	ACTGG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	163, 359
BslI	CCNNNNNNNGG	3 cut(s)	66, 382, 497
BsmAI	GTCTC	1 cut(s)	210
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	2 cut(s)	163, 359
BsmI	GAATGC	2 cut(s)	181, 454
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	199, 222, 508
BspACI	CCGC	3 cut(s)	101, 129, 277
BspCNI	CTCAG	2 cut(s)	207, 313
BspLI	GGNNCC	2 cut(s)	502, 510
BspPI	GGATC	3 cut(s)	194, 503, 516
BspT104I	TTCGAA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	244, 504
BssMI	GATC	3 cut(s)	199, 222, 508
BssT1I	CCWWGG	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	252, 454
BstDEI	CTNAG	2 cut(s)	194, 321
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	3 cut(s)	202, 225, 511
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	199, 222, 508
BstSCI	CCNGG	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	76, 410
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	3 cut(s)	202, 466, 544
Cac8I	GCNNGC	2 cut(s)	252, 454
CviAII	CATG	3 cut(s)	9, 400, 467
CviJI	RGCY	6 cut(s)	76, 108, 214, 250, 271, 501
CviKI_1	RGCY	6 cut(s)	76, 108, 214, 250, 271, 501
DdeI	CTNAG	2 cut(s)	194, 321
DpnI	GATC	3 cut(s)	201, 224, 510
DpnII	GATC	3 cut(s)	199, 222, 508
DraIII	CACNNNGTG	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	3 cut(s)	12, 403, 470
FaqI	GGGAC	2 cut(s)	163, 359
FatI	CATG	3 cut(s)	8, 399, 466
FauNDI	CATATG	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	5 cut(s)	77, 95, 245, 264, 368
GluI	GCNGC	1 cut(s)	99
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	3 cut(s)	12, 403, 470
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	4 cut(s)	17, 151, 160, 476
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	4 cut(s)	144, 301, 481, 505
Hpy188III	TCNNGA	2 cut(s)	164, 209
HpyAV	CCTTC	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	63, 220, 254, 333
HpyF3I	CTNAG	2 cut(s)	194, 321
Hsp92II	CATG	3 cut(s)	12, 403, 470
Kzo9I	GATC	3 cut(s)	199, 222, 508
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	3 cut(s)	73, 107, 160
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	5 cut(s)	77, 95, 245, 264, 368
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	201, 224, 510
MboI	GATC	3 cut(s)	199, 222, 508
MboII	GAAGA	4 cut(s)	76, 101, 415, 451
MfeI	CAATTG	2 cut(s)	64, 285
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	7 cut(s)	36, 55, 64, 285, 294, 314, 348
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	4 cut(s)	16, 316, 499, 501
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	2 cut(s)	64, 285
Mva1269I	GAATGC	2 cut(s)	181, 454
NciI	CCSGG	1 cut(s)	148
NdeI	CATATG	1 cut(s)	329
NdeII	GATC	3 cut(s)	199, 222, 508
NlaIII	CATG	3 cut(s)	12, 403, 470
NlaIV	GGNNCC	2 cut(s)	502, 510
NmuCI	GTSAC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	87
PctI	GAATGC	2 cut(s)	181, 454
PfeI	GAWTC	3 cut(s)	17, 160, 476
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	502, 510
PsuI	RGATCY	1 cut(s)	508
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	199, 222, 508
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	2 cut(s)	110, 273
SfaNI	GCATC	1 cut(s)	264
SfuI	TTCGAA	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	7 cut(s)	36, 55, 64, 285, 294, 314, 348
SsiI	CCGC	3 cut(s)	101, 129, 277
SspMI	CTAG	5 cut(s)	77, 95, 245, 264, 368
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	2 cut(s)	87, 292
TasI	AATT	7 cut(s)	36, 55, 64, 285, 294, 314, 348
TfiI	GAWTC	3 cut(s)	17, 160, 476
TscAI	CASTG	3 cut(s)	202, 466, 544
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	5 cut(s)	188, 372, 416, 452, 455
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	3 cut(s)	202, 466, 544
XapI	RAATTY	4 cut(s)	55, 294, 314, 348
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	5 cut(s)	77, 95, 245, 264, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.