Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002960

Physical Location & Seq

Genomic Coordinates Reverse (-)

54494790 .. 54499430

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0449100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGCTTGCACTCAAACAGGGTAATGAGGTTGGTGGCTCGGATATGAGATGGAGTAGCTTCGTGGATGCATTGCAGGAAGCCGGGGCATATAGGTCATTCAGTGACAAATATGCAGAGGAGATGTACAAGCGAGACCATTGGTTAGGACAGCTGACACAGGGCTACAATCTTATTGCTGTAAGCGGTAGCCATGGAAAGAGTACAACTGCAAGTATGCTTGCTTATGTTCTAGACGCCATGGGTGATAGTCTTACAGCTGTAGTTGGAGCTCACGTGCCACAGTTCTCGGGTGGAAACATTATCTTGGGAGATGGTAAAAATTTTGTGCTAGAGGCTGATGAATATGATGGTTGCTTCCTGGGACTATCACCTTATATAGCTGTTGTAACAAATCTGGATTGGGAGCATGTTGATATTTTCCAAAACGAGGAAGCAGTTAAAGCTACTTTCCATAAATTCCTGAATCTAATCAGGCTGACTGATGTAAAGCAAGCAAGTGGATCAGATACTTTGAGCGGTCTAATGCATTCTCCGCTAGAAAAATGTTGCATTGGCTACAACATAACGACTTATGGAACTACAAGTTCTAATGAATGGAGTGCATCATCAATTAGGCCAAATTTAAAGGGTGGTAGTGATTATACACTGTGTCATTGGGGGCGCTCAGTGGCAGACATCAGTCTAGAGGTTCCAGGAGTTCATAATGTCCTAAATTCACTAGCAGTTATTGCCACTGTGATAGCATTATACAATAACCAACGTGAAATTAACAATACAATAAATGGTTTGTGGTTGCATTTGAACAATTTTATAGGCGTTTCAAGACGTTTTGAGATGATTGGCACAATATGTGGATGCGATATATATGATGATTATGCCCATCATCCAATGGAAGTTCAAGCAGTTATTCAAGCTGCCCGCCAGAAGTTCCCTATCAAGTCTCTTTTAGTTGTATTTCAGCCTCATACTTACAGTCGTTTAGCAGCACTGAAGGATGATTTTGCCAGTGCCCTCTGTGATGCAGATCAAGTTGTAGTTACAGAGGTTTATGCTGCTAGAGAAATAGATGTTGGGAACGTTTGTGGAAGGGAGTTAGCTGCTTCTGTAATCAGCCCGCCATCTGAATACATCCCTCTGGGTGATGTGGTAGAGAGGTTGGTATATCAGATATGCAAGAACCCTCATCATGATACCATTGTCTTAACACTTGGAGCAGGTGATATAACAACAGTGGGGCCAAAGCTGCTCTATGAATTGCGAAGAAGATTACAAGTAAACTCTAACCAGATACCCCAAACTGGAGATGGAAAATATGAATTATTAAACTTTGTATTGAACTTCCCGCAGATTAGCAGTTATAAGCATAGACAATCAAATTCATCAAATGGTACTGCAAATATCAGGCACGAACTTTTCAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

474

Amino Acids

52.23

Weight (kDa)

5.64

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mur_ligase_M	PF08245	60 - 245	2e-18	Mur ligase middle domain
Mur_ligase_C	PF02875	275 - 406	1.8e-14	Mur ligase, glutamate ligase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03780 AT2G03780 AT2G03780
fragaria_vesca	FvH4_4g29320 FvH4_4g29320
malus_domestica	MD13G1056700.v1.1 MD16G1056000.v1.1
prunus_persica	Prupe.1G293300_v2.0.a1 Prupe.1G293300_v2.0.a1
pyrus_communis	pycom16g04880
rosa_chinensis	RchiOBHm_Chr3g0459601 RchiOBHm_Chr3g0459611 RchiOBHm_Chr4g0437361
rosa_laevigata	RLG00000006441
rosa_multiflora	Rmu_sc0004759.1_g000014 Rmu_sc0034128.1_g000001 Rmu_ssc0000087.1_g000062
rosa_roxburghii	Rroxscaffold_2G00092570 Rroxscaffold_5G00378550 Rroxscaffold_7G00174990
rosa_rugosa	Rorug01G0449100 Rorug04G0300700 Rorug04G0300800 Rorug04G0300800 Rorug04G0300900 Rorug04G0315600 Rorug05G0011200
rosa_samantha	Rh2BG219700 Rh3CG281200 Rh4BG365200 Rh4BG377800 Rh4CG379400 Rh4CG391900 Rh6BG022300 Rh6BG380600
rosa_wichuraiana	Rw3G022430 Rw4G031130 Rw4G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1359
AarI	CACCTGC	1 cut(s)	1205
Acc36I	ACCTGC	1 cut(s)	1205
AccBSI	CCGCTC	1 cut(s)	516
AciI	CCGC	6 cut(s)	183, 516, 533, 919, 1115, 1343
AclI	AACGTT	1 cut(s)	1077
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	5 cut(s)	319, 455, 619, 712, 1375
AcuI	CTGAAG	1 cut(s)	1010
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	3 cut(s)	125, 202, 1390
AfiI	CCNNNNNNNGG	2 cut(s)	427, 1298
AgsI	TTSAA	6 cut(s)	802, 822, 899, 911, 1336, 1417
AjnI	CCWGG	2 cut(s)	357, 691
AjuI	GAANNNNNNNTTGG	2 cut(s)	1053, 1085
AluBI	AGCT	9 cut(s)	57, 151, 257, 269, 380, 443, 914, 1097, 1243
AluI	AGCT	9 cut(s)	57, 151, 257, 269, 380, 443, 914, 1097, 1243
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	126, 945
AlwI	GGATC	1 cut(s)	508
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	2 cut(s)	614, 1235
ApeKI	GCWGC	5 cut(s)	914, 983, 1052, 1097, 1243
ApoI	RAATTY	5 cut(s)	319, 455, 619, 712, 1375
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	1 cut(s)	1235
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	4 cut(s)	254, 360, 1151, 1229
AvaI	CYCGRG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	1012
BaeI	ACNNNNGTAYC	2 cut(s)	1182, 1215
BanII	GRGCYC	1 cut(s)	271
BbrPI	CACGTG	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	5 cut(s)	901, 995, 1039, 1084, 1230
BccI	CCATC	6 cut(s)	42, 305, 341, 888, 1126, 1298
BciT130I	CCWGG	2 cut(s)	359, 693
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	126, 945
BfaI	CTAG	6 cut(s)	230, 329, 536, 683, 719, 1056
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	1205
BisI	GCNGC	5 cut(s)	915, 984, 1053, 1098, 1244
BlsI	GCNGC	5 cut(s)	916, 985, 1054, 1099, 1245
Bme1390I	CCNGG	3 cut(s)	82, 359, 693
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	1235
BmiI	GGNNCC	2 cut(s)	690, 1236
BmrFI	CCNGG	3 cut(s)	82, 359, 693
BmsI	GCATC	4 cut(s)	55, 611, 845, 1009
BoxI	GACNNNNGTC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	1320
BpuMI	CCSGG	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	4 cut(s)	81, 190, 237, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 1298
Bse1I	ACTGG	2 cut(s)	1005, 1303
Bse3DI	GCAATG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	1023
BseBI	CCWGG	2 cut(s)	359, 693
BseDI	CCNNGG	4 cut(s)	81, 190, 237, 358
BseGI	GGATG	5 cut(s)	70, 860, 883, 1000, 1128
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	2 cut(s)	427, 1298
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	1005, 1303
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	1012
BseXI	GCAGC	5 cut(s)	901, 995, 1039, 1084, 1230
BshFI	GGCC	2 cut(s)	616, 1237
BsiHKAI	GWGCWC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	427, 1298
BsmAI	GTCTC	2 cut(s)	126, 945
BsmFI	GGGAC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	616, 1237
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	271, 1012
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	500, 1024
Bsp19I	CCATGG	2 cut(s)	190, 237
BspACI	CCGC	6 cut(s)	183, 516, 533, 919, 1115, 1343
BspANI	GGCC	2 cut(s)	616, 1237
BspCNI	CTCAG	1 cut(s)	677
BspHI	TCATGA	1 cut(s)	1186
BspLI	GGNNCC	2 cut(s)	690, 1236
BspMI	ACCTGC	1 cut(s)	1205
BspPI	GGATC	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	516
BsrDI	GCAATG	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	1005, 1303
BssECI	CCNNGG	4 cut(s)	81, 190, 237, 358
BssMI	GATC	2 cut(s)	500, 1024
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	190, 237
Bst2UI	CCWGG	2 cut(s)	359, 693
Bst4CI	ACNGT	5 cut(s)	282, 648, 736, 974, 1231
BstACI	GRCGYC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	5 cut(s)	6, 219, 492, 919, 1115
BstDEI	CTNAG	1 cut(s)	664
BstDSI	CCRYGG	2 cut(s)	190, 237
BstF5I	GGATG	5 cut(s)	70, 860, 883, 1000, 1128
BstH2I	RGCGCY	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	2 cut(s)	503, 1027
BstMAI	GTCTC	2 cut(s)	126, 945
BstMBI	GATC	2 cut(s)	500, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	440, 532, 728, 1243
BstNI	CCWGG	2 cut(s)	359, 693
BstNSI	RCATGY	1 cut(s)	410
BstPAI	GACNNNNGTC	1 cut(s)	678
BstSCI	CCNGG	3 cut(s)	80, 357, 691
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	1012
BstV1I	GCAGC	5 cut(s)	901, 995, 1039, 1084, 1230
BsuRI	GGCC	2 cut(s)	616, 1237
BtgI	CCRYGG	2 cut(s)	190, 237
BtsCI	GGATG	5 cut(s)	70, 860, 883, 1000, 1128
BtsIMutI	CAGTG	7 cut(s)	106, 644, 672, 732, 986, 1012, 1236
BveI	ACCTGC	1 cut(s)	1205
Cac8I	GCNNGC	5 cut(s)	6, 219, 492, 919, 1115
CciI	TCATGA	1 cut(s)	1186
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	1 cut(s)	1235
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	124, 201, 1389
CviAII	CATG	4 cut(s)	191, 238, 407, 1187
CviQI	GTAC	3 cut(s)	124, 201, 1389
DdeI	CTNAG	1 cut(s)	664
DpnI	GATC	2 cut(s)	502, 1026
DpnII	GATC	2 cut(s)	500, 1024
DraI	TTTAAA	1 cut(s)	624
Ecl136II	GAGCTC	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	190, 237
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	1010
Eco72I	CACGTG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	357, 691
EcoT14I	CCWWGG	2 cut(s)	190, 237
EcoT22I	ATGCAT	2 cut(s)	70, 528
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	190, 237
FaeI	CATG	4 cut(s)	194, 241, 410, 1190
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	190, 237, 406, 1186
FauI	CCCGC	3 cut(s)	926, 1122, 1350
Fnu4HI	GCNGC	5 cut(s)	915, 984, 1053, 1098, 1244
FokI	GGATG	5 cut(s)	77, 867, 870, 1007, 1115
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	5 cut(s)	915, 984, 1053, 1098, 1244
FspBI	CTAG	6 cut(s)	230, 329, 536, 683, 719, 1056
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	5 cut(s)	915, 984, 1053, 1098, 1244
GsuI	CTGGAG	1 cut(s)	1320
HaeII	RGCGCY	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	616, 1237
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	663
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	194, 241, 410, 1190
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	4 cut(s)	254, 360, 1151, 1229
Hpy166II	GTNNAC	1 cut(s)	1276
Hpy188I	TCNGA	4 cut(s)	40, 505, 1123, 1167
Hpy188III	TCNNGA	6 cut(s)	230, 395, 460, 683, 822, 1187
Hpy8I	GTNNAC	1 cut(s)	1276
HpyAV	CCTTC	2 cut(s)	985, 1080
HpyCH4III	ACNGT	5 cut(s)	282, 648, 736, 974, 1231
HpyCH4IV	ACGT	4 cut(s)	273, 760, 826, 1077
HpyF10VI	GCNNNNNNNGC	4 cut(s)	440, 532, 728, 1243
HpyF3I	CTNAG	1 cut(s)	664
HpySE526I	ACGT	4 cut(s)	273, 760, 826, 1077
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	194, 241, 410, 1190
HspAI	GCGC	1 cut(s)	661
Kzo9I	GATC	2 cut(s)	500, 1024
LmnI	GCTCC	3 cut(s)	266, 403, 1211
Lsp1109I	GCAGC	5 cut(s)	901, 995, 1039, 1084, 1230
LweI	GCATC	4 cut(s)	55, 611, 845, 1009
MaeI	CTAG	6 cut(s)	230, 329, 536, 683, 719, 1056
MaeII	ACGT	4 cut(s)	273, 760, 826, 1077
MaeIII	GTNAC	3 cut(s)	101, 385, 1036
MalI	GATC	2 cut(s)	502, 1026
MbiI	CCGCTC	1 cut(s)	516
MboI	GATC	2 cut(s)	500, 1024
MboII	GAAGA	2 cut(s)	1272, 1275
MhlI	GDGCHC	2 cut(s)	271, 1012
MmeI	TCCRAC	1 cut(s)	244
Mph1103I	ATGCAT	2 cut(s)	70, 528
MseI	TTAA	5 cut(s)	438, 623, 768, 1202, 1322
MspA1I	CMGCKG	2 cut(s)	151, 257
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	3 cut(s)	82, 359, 693
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	359, 693
MwoI	GCNNNNNNNGC	4 cut(s)	440, 532, 728, 1243
NciI	CCSGG	1 cut(s)	82
NcoI	CCATGG	2 cut(s)	190, 237
NdeII	GATC	2 cut(s)	500, 1024
NlaIII	CATG	4 cut(s)	194, 241, 410, 1190
NlaIV	GGNNCC	2 cut(s)	690, 1236
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	2 cut(s)	70, 528
NspI	RCATGY	1 cut(s)	410
PagI	TCATGA	1 cut(s)	1186
PaqCI	CACCTGC	1 cut(s)	1205
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	691
PkrI	GCNGC	5 cut(s)	916, 985, 1054, 1099, 1245
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	678
PsiI	TTATAA	1 cut(s)	1359
Psp124BI	GAGCTC	1 cut(s)	271
Psp1406I	AACGTT	1 cut(s)	1077
Psp6I	CCWGG	2 cut(s)	357, 691
PspCI	CACGTG	1 cut(s)	274
PspGI	CCWGG	2 cut(s)	357, 691
PspN4I	GGNNCC	2 cut(s)	690, 1236
PspPI	GGNCC	1 cut(s)	1235
PvuII	CAGCTG	2 cut(s)	151, 257
RsaI	GTAC	3 cut(s)	125, 202, 1390
RsaNI	GTAC	3 cut(s)	124, 201, 1389
SacI	GAGCTC	1 cut(s)	271
SaqAI	TTAA	5 cut(s)	438, 623, 768, 1202, 1322
SatI	GCNGC	5 cut(s)	915, 984, 1053, 1098, 1244
Sau3AI	GATC	2 cut(s)	500, 1024
Sau96I	GGNCC	1 cut(s)	1235
ScrFI	CCNGG	3 cut(s)	82, 359, 693
SduI	GDGCHC	2 cut(s)	271, 1012
SfaNI	GCATC	4 cut(s)	55, 611, 845, 1009
SfcI	CTRYAG	1 cut(s)	258
SsiI	CCGC	6 cut(s)	183, 516, 533, 919, 1115, 1343
SspMI	CTAG	6 cut(s)	230, 329, 536, 683, 719, 1056
SstI	GAGCTC	1 cut(s)	271
StyD4I	CCNGG	3 cut(s)	80, 357, 691
StyI	CCWWGG	2 cut(s)	190, 237
TaaI	ACNGT	5 cut(s)	282, 648, 736, 974, 1231
TaiI	ACGT	4 cut(s)	276, 763, 829, 1080
TatI	WGTACW	2 cut(s)	123, 200
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	5 cut(s)	438, 623, 768, 1202, 1322
Tru9I	TTAA	5 cut(s)	438, 623, 768, 1202, 1322
TscAI	CASTG	7 cut(s)	106, 651, 672, 739, 993, 1012, 1236
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	5 cut(s)	914, 983, 1052, 1097, 1243
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	6 cut(s)	354, 606, 689, 1266, 1329, 1368
TspRI	CASTG	7 cut(s)	106, 651, 672, 739, 993, 1012, 1236
XapI	RAATTY	5 cut(s)	319, 455, 619, 712, 1375
XbaI	TCTAGA	2 cut(s)	229, 682
XceI	RCATGY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1301
XspI	CTAG	6 cut(s)	230, 329, 536, 683, 719, 1056
Zsp2I	ATGCAT	2 cut(s)	70, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.