Rw3G022430

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002960
Physical Location & Seq
Reverse (-)
27452710 .. 27457186
4477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G022430.1

Sequence Viewer

Length: 900 bp
ATGTTCAGATATGAAAAAGCAAATCAGGGACTCCCCATCCCTAGACTGGTTTATCAAGTGAGATCTCTCCAAAGACATTTCCTGATAACACAATCAGTATATAACTCCCAGAATAGCTCTAAAGGAATTCAAACCAAGAAAAGATTGATGAAAACAAAAGGTGAGATTCAAACATACATGATCAAACAAGTAACCAGCAATAGAGAGGCAAAAGACCAATACACCCCATCATCAGATCAAATATTAAGCTCACAAGAACAAAACGAAAGTAAATCAAAACAAGTTGTCATAGACACTAAGCTGGTGTGCAAAATAGTAAACAATTCCTGCAATTGGAATAGGCTAGTTGTCTTCAAAGAACAAGCAGCGGTAAGCTTTGCCAAAGCACAAGAAACCGCCGTGACTGATCAGTTCGTGGCCCGGCTGGTTAAAGAGTTGCAAGGGACTGATTTTTGGAAGCTACAACATACTCGCTTGGGATACAAGAGTACGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACTTTGCTACCACTCAGGGATCCGTCTCTTGAGCCTTTGCAGATCAATGTCTTTGACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATACGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGTTGAGGACATATGCAAGTTTGTGCGTGAAATTTACAATGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATTGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCAGTGTTCATGTTAGAGAATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

299

Amino Acids

34.08

Weight (kDa)

6.03

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 118 - 274 8.1e-26 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 368, 396
AclWI GGATC 4 cut(s) 542, 555, 851, 864
AcsI RAATTY 4 cut(s) 126, 642, 662, 696
AcuI CTGAAG 1 cut(s) 790
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 4 cut(s) 46, 333, 730, 845
AgsI TTSAA 6 cut(s) 131, 170, 355, 508, 662, 776
AluBI AGCT 6 cut(s) 117, 249, 301, 375, 460, 619
AluI AGCT 6 cut(s) 117, 249, 301, 375, 460, 619
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 4 cut(s) 542, 555, 851, 864
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 4 cut(s) 126, 642, 662, 696
AspA2I CCTAGG 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 418
AsuC2I CCSGG 2 cut(s) 421, 496
AsuHPI GGTGA 2 cut(s) 173, 665
AvrII CCTAGG 1 cut(s) 592
BaeGI GKGCMC 1 cut(s) 885
BaeI ACNNNNGTAYC 2 cut(s) 472, 505
BamHI GGATCC 2 cut(s) 547, 856
BbsI GAAGAC 2 cut(s) 343, 758
BbvI GCAGC 1 cut(s) 377
BccI CCATC 3 cut(s) 44, 235, 644
BceAI ACGGC 1 cut(s) 383
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 2 cut(s) 180, 406
BcnI CCSGG 2 cut(s) 421, 496
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 4 cut(s) 42, 344, 593, 716
BfuI GTATCC 1 cut(s) 473
BglII AGATCT 1 cut(s) 62
BisI GCNGC 1 cut(s) 366
BlnI CCTAGG 1 cut(s) 592
BlsI GCNGC 1 cut(s) 367
Bme1390I CCNGG 2 cut(s) 421, 496
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 3 cut(s) 549, 850, 858
BmrFI CCNGG 2 cut(s) 421, 496
BmrI ACTGGG 1 cut(s) 879
BmuI ACTGGG 1 cut(s) 879
BpiI GAAGAC 2 cut(s) 343, 758
BpmI CTGGAG 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 421, 496
BsaJI CCNNGG 2 cut(s) 592, 852
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 333, 730, 845
Bse1I ACTGG 3 cut(s) 51, 616, 885
BseDI CCNNGG 2 cut(s) 592, 852
BseGI GGATG 2 cut(s) 36, 739
BseLI CCNNNNNNNGG 4 cut(s) 46, 333, 730, 845
BseMII CTCAG 1 cut(s) 556
BseNI ACTGG 3 cut(s) 51, 616, 885
BseSI GKGCMC 1 cut(s) 885
BseXI GCAGC 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 495
BsiSI CCGG 2 cut(s) 421, 495
BslFI GGGAC 4 cut(s) 42, 457, 511, 707
BslI CCNNNNNNNGG 4 cut(s) 46, 333, 730, 845
BsmAI GTCTC 1 cut(s) 558
BsmBI CGTCTC 1 cut(s) 558
BsmFI GGGAC 4 cut(s) 42, 457, 511, 707
BsmI GAATGC 2 cut(s) 529, 802
BsnI GGCC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 885
Bsp143I GATC 7 cut(s) 62, 180, 235, 406, 547, 570, 856
BspACI CCGC 2 cut(s) 368, 396
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 1 cut(s) 555
BspLI GGNNCC 3 cut(s) 549, 850, 858
BspPI GGATC 4 cut(s) 542, 555, 851, 864
BsrI ACTGG 3 cut(s) 51, 616, 885
BssECI CCNNGG 2 cut(s) 592, 852
BssMI GATC 7 cut(s) 62, 180, 235, 406, 547, 570, 856
BssT1I CCWWGG 1 cut(s) 592
Bst4CI ACNGT 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 600, 802
BstDEI CTNAG 2 cut(s) 297, 542
BstF5I GGATG 2 cut(s) 36, 739
BstKTI GATC 7 cut(s) 65, 183, 238, 409, 550, 573, 859
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 7 cut(s) 62, 180, 235, 406, 547, 570, 856
BstMCI CGRYCG 1 cut(s) 495
BstSCI CCNGG 2 cut(s) 419, 494
BstSLI GKGCMC 1 cut(s) 885
BstV1I GCAGC 1 cut(s) 377
BstV2I GAAGAC 2 cut(s) 343, 758
BstX2I RGATCY 3 cut(s) 62, 547, 856
BstYI RGATCY 3 cut(s) 62, 547, 856
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 2 cut(s) 36, 739
BtsIMutI CAGTG 2 cut(s) 814, 892
Cac8I GCNNGC 2 cut(s) 600, 802
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 489
CviAII CATG 3 cut(s) 178, 748, 815
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 2 cut(s) 297, 542
DpnI GATC 7 cut(s) 64, 182, 237, 408, 549, 572, 858
DpnII GATC 7 cut(s) 62, 180, 235, 406, 547, 570, 856
Eco130I CCWWGG 1 cut(s) 592
Eco57I CTGAAG 1 cut(s) 790
EcoRI GAATTC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 592
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 3 cut(s) 181, 751, 818
FaqI GGGAC 4 cut(s) 42, 457, 511, 707
FatI CATG 3 cut(s) 177, 747, 814
FauNDI CATATG 1 cut(s) 677
FbaI TGATCA 2 cut(s) 180, 406
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 2 cut(s) 23, 746
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 4 cut(s) 42, 344, 593, 716
GluI GCNGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 421, 495
Hin1II CATG 3 cut(s) 181, 751, 818
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 5 cut(s) 30, 166, 499, 508, 824
HpaII CCGG 2 cut(s) 421, 495
HphI GGTGA 2 cut(s) 173, 665
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 5 cut(s) 8, 235, 649, 829, 853
Hpy188III TCNNGA 3 cut(s) 82, 512, 557
Hpy8I GTNNAC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4V TGCA 6 cut(s) 309, 330, 439, 568, 602, 681
HpyF3I CTNAG 2 cut(s) 297, 542
Hsp92II CATG 3 cut(s) 181, 751, 818
Ksp22I TGATCA 2 cut(s) 180, 406
Kzo9I GATC 7 cut(s) 62, 180, 235, 406, 547, 570, 856
LmnI GCTCC 1 cut(s) 854
Lsp1109I GCAGC 1 cut(s) 377
MaeI CTAG 4 cut(s) 42, 344, 593, 716
MaeIII GTNAC 2 cut(s) 190, 400
MalI GATC 7 cut(s) 64, 182, 237, 408, 549, 572, 858
MboI GATC 7 cut(s) 62, 180, 235, 406, 547, 570, 856
MboII GAAGA 3 cut(s) 343, 763, 799
MfeI CAATTG 2 cut(s) 331, 633
MflI RGATCY 3 cut(s) 62, 547, 856
MhlI GDGCHC 1 cut(s) 885
MluCI AATT 8 cut(s) 126, 322, 331, 633, 642, 662, 696, 759
MlyI GAGTC 2 cut(s) 24, 493
MmeI TCCRAC 1 cut(s) 884
MnlI CCTC 4 cut(s) 199, 664, 847, 849
MseI TTAA 2 cut(s) 245, 429
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 2 cut(s) 421, 495
MspR9I CCNGG 2 cut(s) 421, 496
MunI CAATTG 2 cut(s) 331, 633
Mva1269I GAATGC 2 cut(s) 529, 802
NciI CCSGG 2 cut(s) 421, 496
NdeI CATATG 1 cut(s) 677
NdeII GATC 7 cut(s) 62, 180, 235, 406, 547, 570, 856
NlaIII CATG 3 cut(s) 181, 751, 818
NlaIV GGNNCC 3 cut(s) 549, 850, 858
NmuCI GTSAC 1 cut(s) 400
PctI GAATGC 2 cut(s) 529, 802
PfeI GAWTC 3 cut(s) 166, 508, 824
PkrI GCNGC 1 cut(s) 367
PleI GAGTC 2 cut(s) 24, 493
PpsI GAGTC 2 cut(s) 24, 493
PspN4I GGNNCC 3 cut(s) 549, 850, 858
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 3 cut(s) 62, 547, 856
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 245, 429
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 7 cut(s) 62, 180, 235, 406, 547, 570, 856
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 2 cut(s) 24, 493
ScrFI CCNGG 2 cut(s) 421, 496
SduI GDGCHC 1 cut(s) 885
SetI ASST 7 cut(s) 119, 163, 251, 303, 377, 462, 621
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 8 cut(s) 126, 322, 331, 633, 642, 662, 696, 759
SsiI CCGC 2 cut(s) 368, 396
SspI AATATT 1 cut(s) 243
SspMI CTAG 4 cut(s) 42, 344, 593, 716
StyD4I CCNGG 2 cut(s) 419, 494
StyI CCWWGG 1 cut(s) 592
TaaI ACNGT 1 cut(s) 627
TaqI TCGA 1 cut(s) 640
TasI AATT 8 cut(s) 126, 322, 331, 633, 642, 662, 696, 759
TfiI GAWTC 3 cut(s) 166, 508, 824
Tru1I TTAA 2 cut(s) 245, 429
Tru9I TTAA 2 cut(s) 245, 429
TscAI CASTG 2 cut(s) 814, 892
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 7 cut(s) 27, 164, 536, 720, 764, 800, 803
TspGWI ACGGA 1 cut(s) 540
TspRI CASTG 2 cut(s) 814, 892
XapI RAATTY 4 cut(s) 126, 642, 662, 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmaJI CCTAGG 1 cut(s) 592
XspI CTAG 4 cut(s) 42, 344, 593, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.