RLG00000006441

Translin-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002960
Physical Location & Seq
Reverse (-)
7229052 .. 7230697
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006441

Sequence Viewer

Length: 858 bp
ATGTTGCAGCGCTACGCATTATTGCAGAAGATTTCAGTGATGGCTCTCAAACCCCACCGCCTCCATAACCTCGCCGATACGACGTCGCTTGGCGTAGCAGAGAGGGCAAGAACAATGGCCACCGAATCCTCCTCCTCTATGAAAGACGCCTTCTCCCAATACGCCGATTACCTCAACAACCAAAATGATAAACGTGAAAGAATCGTCAAAGCGAGTCGGGATATCACCATGAACAGCAAAAAGGTCATCTTTCAAGTCCACAGAATGAGCAAGCACAACAGAGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATCAGTTCGTGGCCCGGCTGGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTACGACGAGCATACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACTGGGACTCTTTTGAATCTTGATGAGATGAATGCTACTTTGCTACCACTCAGTGATCCGTCTCTTGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGTTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCAGTGTTCATGTCAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Translin

Protein Analysis

286

Amino Acids

32.34

Weight (kDa)

5.83

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 63 - 261 4.5e-59 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AciI CCGC 2 cut(s) 58, 318
AclWI GGATC 5 cut(s) 336, 500, 790, 809, 822
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 4 cut(s) 440, 600, 620, 654
AcuI CTGAAG 1 cut(s) 748
AcyI GRCGYC 2 cut(s) 83, 147
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 1 cut(s) 416
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 688, 803
AgsI TTSAA 5 cut(s) 254, 422, 466, 620, 734
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 4 cut(s) 358, 382, 425, 577
AluI AGCT 4 cut(s) 358, 382, 425, 577
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 5 cut(s) 336, 500, 790, 809, 822
Aor51HI AGCGCT 1 cut(s) 11
AoxI GGCC 2 cut(s) 117, 339
ApeKI GCWGC 3 cut(s) 7, 358, 425
ApoI RAATTY 4 cut(s) 440, 600, 620, 654
AspA2I CCTAGG 1 cut(s) 550
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 217, 623
AvrII CCTAGG 1 cut(s) 550
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 398, 431
BalI TGGCCA 1 cut(s) 119
BamHI GGATCC 1 cut(s) 814
BbsI GAAGAC 1 cut(s) 716
BbvI GCAGC 3 cut(s) 19, 345, 412
BccI CCATC 2 cut(s) 34, 602
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 2 cut(s) 399, 715
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 2 cut(s) 551, 674
BfmI CTRYAG 2 cut(s) 293, 445
BfoI RGCGCY 1 cut(s) 13
BfuI GTATCC 2 cut(s) 399, 715
BisI GCNGC 4 cut(s) 8, 318, 359, 426
BlnI CCTAGG 1 cut(s) 550
BlsI GCNGC 4 cut(s) 9, 319, 360, 427
Bme1390I CCNGG 2 cut(s) 343, 402
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 2 cut(s) 808, 816
BmrFI CCNGG 2 cut(s) 343, 402
BmrI ACTGGG 2 cut(s) 462, 837
BmsI GCATC 1 cut(s) 570
BmuI ACTGGG 2 cut(s) 462, 837
BpiI GAAGAC 1 cut(s) 716
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 343
BsaHI GRCGYC 2 cut(s) 83, 147
BsaJI CCNNGG 3 cut(s) 401, 550, 810
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 688, 803
Bse1I ACTGG 3 cut(s) 457, 574, 843
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 3 cut(s) 401, 550, 810
BseGI GGATG 1 cut(s) 697
BseLI CCNNNNNNNGG 2 cut(s) 688, 803
BseMII CTCAG 2 cut(s) 514, 618
BseNI ACTGG 3 cut(s) 457, 574, 843
BseRI GAGGAG 3 cut(s) 121, 124, 299
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 3 cut(s) 19, 345, 412
BshFI GGCC 2 cut(s) 119, 341
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 3 cut(s) 379, 469, 665
BslI CCNNNNNNNGG 2 cut(s) 688, 803
BsmAI GTCTC 1 cut(s) 516
BsmBI CGTCTC 1 cut(s) 516
BsmFI GGGAC 3 cut(s) 379, 469, 665
BsmI GAATGC 2 cut(s) 487, 760
BsnI GGCC 2 cut(s) 119, 341
Bsp1286I GDGCHC 1 cut(s) 843
Bsp143I GATC 5 cut(s) 328, 505, 528, 782, 814
BspACI CCGC 2 cut(s) 58, 318
BspANI GGCC 2 cut(s) 119, 341
BspCNI CTCAG 2 cut(s) 513, 619
BspLI GGNNCC 2 cut(s) 808, 816
BspMAI CTGCAG 2 cut(s) 297, 449
BspPI GGATC 5 cut(s) 336, 500, 790, 809, 822
BsrI ACTGG 3 cut(s) 457, 574, 843
BssECI CCNNGG 3 cut(s) 401, 550, 810
BssMI GATC 5 cut(s) 328, 505, 528, 782, 814
BssNI GRCGYC 2 cut(s) 83, 147
BssT1I CCWWGG 1 cut(s) 550
Bst2UI CCWGG 1 cut(s) 402
BstACI GRCGYC 2 cut(s) 83, 147
BstC8I GCNNGC 3 cut(s) 272, 558, 760
BstDEI CTNAG 2 cut(s) 500, 627
BstF5I GGATG 1 cut(s) 697
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 5 cut(s) 331, 508, 531, 785, 817
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 5 cut(s) 328, 505, 528, 782, 814
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 341, 400
BstSFI CTRYAG 2 cut(s) 293, 445
BstSLI GKGCMC 1 cut(s) 843
BstV1I GCAGC 3 cut(s) 19, 345, 412
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BsuI GTATCC 2 cut(s) 399, 715
BsuRI GGCC 2 cut(s) 119, 341
BtsCI GGATG 1 cut(s) 697
BtsIMutI CAGTG 4 cut(s) 42, 508, 772, 850
Cac8I GCNNGC 3 cut(s) 272, 558, 760
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 340
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 415
CviAII CATG 3 cut(s) 229, 706, 773
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 500, 627
DpnI GATC 5 cut(s) 330, 507, 530, 784, 816
DpnII GATC 5 cut(s) 328, 505, 528, 782, 814
DraIII CACNNNGTG 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 550
Eco32I GATATC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 3 cut(s) 232, 709, 776
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 3 cut(s) 379, 469, 665
FatI CATG 3 cut(s) 228, 705, 772
FauNDI CATATG 1 cut(s) 635
Fnu4HI GCNGC 4 cut(s) 8, 318, 359, 426
FokI GGATG 1 cut(s) 704
Fsp4HI GCNGC 4 cut(s) 8, 318, 359, 426
FspBI CTAG 2 cut(s) 551, 674
GlaI GCGC 1 cut(s) 11
GluI GCNGC 4 cut(s) 8, 318, 359, 426
GsuI CTGGAG 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 2 cut(s) 119, 341
HapII CCGG 1 cut(s) 343
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 2 cut(s) 83, 147
Hin1II CATG 3 cut(s) 232, 709, 776
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 5 cut(s) 125, 201, 214, 457, 466
HpaII CCGG 1 cut(s) 343
HphI GGTGA 2 cut(s) 217, 623
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 607, 779, 787, 811
Hpy188III TCNNGA 3 cut(s) 218, 470, 515
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 3 cut(s) 85, 88, 390
HpyAV CCTTC 2 cut(s) 160, 442
HpyCH4IV ACGT 3 cut(s) 83, 193, 417
HpyCH4V TGCA 9 cut(s) 7, 25, 295, 361, 428, 447, 526, 560, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 500, 627
HpySE526I ACGT 3 cut(s) 83, 193, 417
Hsp92I GRCGYC 2 cut(s) 83, 147
Hsp92II CATG 3 cut(s) 232, 709, 776
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 5 cut(s) 328, 505, 528, 782, 814
LmnI GCTCC 1 cut(s) 812
LpnPI CCDG 8 cut(s) 332, 356, 387, 414, 433, 438, 555, 646
Lsp1109I GCAGC 3 cut(s) 19, 345, 412
LweI GCATC 1 cut(s) 570
MaeI CTAG 2 cut(s) 551, 674
MaeII ACGT 3 cut(s) 83, 193, 417
MaeIII GTNAC 1 cut(s) 322
MalI GATC 5 cut(s) 330, 507, 530, 784, 816
MboI GATC 5 cut(s) 328, 505, 528, 782, 814
MboII GAAGA 3 cut(s) 40, 721, 757
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 1 cut(s) 843
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 5 cut(s) 440, 591, 600, 620, 654
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 223, 451
MmeI TCCRAC 1 cut(s) 842
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 343, 402
MunI CAATTG 1 cut(s) 591
Mva1269I GAATGC 2 cut(s) 487, 760
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 1 cut(s) 104
NciI CCSGG 1 cut(s) 343
NdeI CATATG 1 cut(s) 635
NdeII GATC 5 cut(s) 328, 505, 528, 782, 814
NlaIII CATG 3 cut(s) 232, 709, 776
NlaIV GGNNCC 2 cut(s) 808, 816
NmuCI GTSAC 1 cut(s) 322
PctI GAATGC 2 cut(s) 487, 760
PfeI GAWTC 3 cut(s) 125, 201, 466
PkrI GCNGC 4 cut(s) 9, 319, 360, 427
PleI GAGTC 2 cut(s) 222, 451
PpsI GAGTC 2 cut(s) 222, 451
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 808, 816
PspPI GGNCC 1 cut(s) 340
PstI CTGCAG 2 cut(s) 297, 449
PsuI RGATCY 1 cut(s) 814
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 8, 318, 359, 426
Sau3AI GATC 5 cut(s) 328, 505, 528, 782, 814
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 2 cut(s) 223, 451
ScrFI CCNGG 2 cut(s) 343, 402
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 2 cut(s) 293, 445
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 5 cut(s) 440, 591, 600, 620, 654
SsiI CCGC 2 cut(s) 58, 318
SspMI CTAG 2 cut(s) 551, 674
StyD4I CCNGG 2 cut(s) 341, 400
StyI CCWWGG 1 cut(s) 550
TaiI ACGT 3 cut(s) 86, 196, 420
TaqI TCGA 1 cut(s) 598
TasI AATT 5 cut(s) 440, 591, 600, 620, 654
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 3 cut(s) 125, 201, 466
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 4 cut(s) 42, 508, 772, 850
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 3 cut(s) 7, 358, 425
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 6 cut(s) 155, 245, 494, 722, 758, 761
TspGWI ACGGA 2 cut(s) 341, 498
TspRI CASTG 4 cut(s) 42, 508, 772, 850
XapI RAATTY 4 cut(s) 440, 600, 620, 654
XmaJI CCTAGG 1 cut(s) 550
XspI CTAG 2 cut(s) 551, 674
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.