Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002960

Physical Location & Seq

Genomic Coordinates Reverse (-)

29101690 .. 29104233

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTGAAGTTGCAGCGCTTATCTCTGCGGATGATGGCTCTCAAACCCCAGCGCCTCCACAACATTGCAGAGACGACGTCGCAGAGCGTAGCAAAAAGGGTGAGGACGATGACCACTGAATCCTCCATGAAAGATTCCTTCGCCAAATACACCGATTACCTCAATGACCTGAATGAAAAACGGGAAAGAGTCGTAAAAGCAAGTCGTGATATCACCATTAACAGCAAAAAGGTCATCTTTCAGGTGCACAGAATCAGTAAACACAACAAAGAGGAAGTTCTGCAGAAAGCAGAAAAGGATTTAGCGACTGTGACTGATCAGTACATCTCCCGACTGGTTAGGGAGCTGCAAGGGACTGATTTTTGGAAGTTAAGACGAGCATACTCACCTGGGGTACAAGAATATGTTGAAGCTGCAACGTTCTGTAAATTCTGCAGGACTGGGACTCTTTTAAACCTTGATGAGATGAATGCTACTTTGTTACCACTCAGTGATCCTTCTCTTGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTCGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAACTTGATTTCGCTAAGAAGATATGCGAGTTTGTGCGTGAAATTTACAGGGAACTAACCCTTGTTGTCCCATTTATGGATGATAGTCATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCGGTGTTCATGTGAGAGGATCAGAGTATATGCCCCTACTTGGCTCCGACGATCCAACTTCATTCTTATTGGGAGTGCCTGATGTTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

282

Amino Acids

32.18

Weight (kDa)

6.55

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03780 AT2G03780 AT2G03780
fragaria_vesca	FvH4_4g29320 FvH4_4g29320
malus_domestica	MD13G1056700.v1.1 MD16G1056000.v1.1
prunus_persica	Prupe.1G293300_v2.0.a1 Prupe.1G293300_v2.0.a1
pyrus_communis	pycom16g04880
rosa_chinensis	RchiOBHm_Chr3g0459601 RchiOBHm_Chr3g0459611 RchiOBHm_Chr4g0437361
rosa_laevigata	RLG00000006441
rosa_multiflora	Rmu_sc0004759.1_g000014 Rmu_sc0034128.1_g000001 Rmu_ssc0000087.1_g000062
rosa_roxburghii	Rroxscaffold_2G00092570 Rroxscaffold_5G00378550 Rroxscaffold_7G00174990
rosa_rugosa	Rorug01G0449100 Rorug04G0300700 Rorug04G0300800 Rorug04G0300800 Rorug04G0300900 Rorug04G0315600 Rorug05G0011200
rosa_samantha	Rh2BG219700 Rh3CG281200 Rh4BG365200 Rh4BG377800 Rh4CG379400 Rh4CG391900 Rh6BG022300 Rh6BG380600
rosa_wichuraiana	Rw3G022430 Rw4G031130 Rw4G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	80
AciI	CCGC	2 cut(s)	28, 571
AclI	AACGTT	1 cut(s)	419
AclWI	GGATC	3 cut(s)	488, 778, 797
AcsI	RAATTY	3 cut(s)	428, 588, 642
AcyI	GRCGYC	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	323, 396
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	676, 791
AgsI	TTSAA	4 cut(s)	7, 410, 722, 839
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	3 cut(s)	346, 413, 565
AluI	AGCT	3 cut(s)	346, 413, 565
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	65
Alw44I	GTGCAC	1 cut(s)	245
AlwI	GGATC	3 cut(s)	488, 778, 797
Ama87I	CYCGRG	1 cut(s)	539
Aor51HI	AGCGCT	1 cut(s)	17
ApaLI	GTGCAC	1 cut(s)	245
ApeKI	GCWGC	3 cut(s)	13, 346, 413
ApoI	RAATTY	3 cut(s)	428, 588, 642
AspLEI	GCGC	2 cut(s)	18, 54
AsuHPI	GGTGA	4 cut(s)	112, 205, 378, 611
AvaI	CYCGRG	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	25, 333, 400
BccI	CCATC	2 cut(s)	28, 590
BciT130I	CCWGG	1 cut(s)	390
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	2 cut(s)	281, 433
BfoI	RGCGCY	2 cut(s)	19, 55
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	3 cut(s)	14, 347, 414
BlsI	GCNGC	3 cut(s)	15, 348, 415
Bme1390I	CCNGG	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	796
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	704
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	389, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	676, 791
Bse1I	ACTGG	3 cut(s)	339, 445, 562
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	389, 538
BseGI	GGATG	2 cut(s)	36, 685
BseLI	CCNNNNNNNGG	2 cut(s)	676, 791
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	502
BseNI	ACTGG	3 cut(s)	339, 445, 562
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	3 cut(s)	25, 333, 400
BseYI	CCCAGC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	539
BslFI	GGGAC	3 cut(s)	367, 457, 653
BslI	CCNNNNNNNGG	2 cut(s)	676, 791
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	3 cut(s)	367, 457, 653
BsmI	GAATGC	2 cut(s)	475, 748
BsoBI	CYCGRG	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	316, 493, 516, 770, 802
BspACI	CCGC	2 cut(s)	28, 571
BspCNI	CTCAG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	796
BspMAI	CTGCAG	2 cut(s)	285, 437
BspPI	GGATC	3 cut(s)	488, 778, 797
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	339, 445, 562
BssECI	CCNNGG	2 cut(s)	389, 538
BssMI	GATC	5 cut(s)	316, 493, 516, 770, 802
BssNI	GRCGYC	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	546, 748
BstDEI	CTNAG	2 cut(s)	488, 615
BstF5I	GGATG	2 cut(s)	36, 685
BstH2I	RGCGCY	2 cut(s)	19, 55
BstHHI	GCGC	2 cut(s)	18, 54
BstKTI	GATC	5 cut(s)	319, 496, 519, 773, 805
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	5 cut(s)	316, 493, 516, 770, 802
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	2 cut(s)	281, 433
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	25, 333, 400
BstV2I	GAAGAC	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	703
BtsCI	GGATG	2 cut(s)	36, 685
BtsIMutI	CAGTG	2 cut(s)	114, 496
Cac8I	GCNNGC	2 cut(s)	546, 748
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	2 cut(s)	18, 54
Csp6I	GTAC	2 cut(s)	322, 395
CviAII	CATG	4 cut(s)	127, 689, 694, 761
CviJI	RGCY	7 cut(s)	38, 346, 413, 508, 544, 565, 795
CviKI_1	RGCY	7 cut(s)	38, 346, 413, 508, 544, 565, 795
CviQI	GTAC	2 cut(s)	322, 395
DdeI	CTNAG	2 cut(s)	488, 615
DpnI	GATC	5 cut(s)	318, 495, 518, 772, 804
DpnII	GATC	5 cut(s)	316, 493, 516, 770, 802
DraI	TTTAAA	1 cut(s)	453
DraIII	CACNNNGTG	1 cut(s)	491
Eco32I	GATATC	1 cut(s)	211
Eco47III	AGCGCT	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	4 cut(s)	130, 692, 697, 764
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	3 cut(s)	367, 457, 653
FatI	CATG	4 cut(s)	126, 688, 693, 760
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	3 cut(s)	14, 347, 414
FokI	GGATG	2 cut(s)	43, 692
Fsp4HI	GCNGC	3 cut(s)	14, 347, 414
GlaI	GCGC	2 cut(s)	17, 53
GluI	GCNGC	3 cut(s)	14, 347, 414
GsaI	CCCAGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	2 cut(s)	19, 55
HhaI	GCGC	2 cut(s)	18, 54
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	130, 692, 697, 764
Hin6I	GCGC	2 cut(s)	16, 52
HinP1I	GCGC	2 cut(s)	16, 52
HinfI	GANTC	5 cut(s)	119, 134, 189, 252, 445
HphI	GGTGA	4 cut(s)	112, 205, 378, 611
Hpy166II	GTNNAC	3 cut(s)	247, 260, 602
Hpy188I	TCNGA	3 cut(s)	595, 775, 799
Hpy188III	TCNNGA	4 cut(s)	206, 330, 503, 689
Hpy8I	GTNNAC	3 cut(s)	247, 260, 602
Hpy99I	CGWCG	3 cut(s)	79, 82, 803
HpyAV	CCTTC	2 cut(s)	148, 507
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	2 cut(s)	77, 419
HpyCH4V	TGCA	9 cut(s)	13, 68, 247, 283, 349, 416, 435, 514, 548
HpyF3I	CTNAG	2 cut(s)	488, 615
HpySE526I	ACGT	2 cut(s)	77, 419
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	130, 692, 697, 764
HspAI	GCGC	2 cut(s)	16, 52
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	316, 493, 516, 770, 802
LmnI	GCTCC	2 cut(s)	343, 800
Lsp1109I	GCAGC	3 cut(s)	25, 333, 400
LweI	GCATC	1 cut(s)	558
MaeII	ACGT	2 cut(s)	77, 419
MaeIII	GTNAC	2 cut(s)	310, 480
MalI	GATC	5 cut(s)	318, 495, 518, 772, 804
MboI	GATC	5 cut(s)	316, 493, 516, 770, 802
MboII	GAAGA	3 cut(s)	631, 709, 745
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	428, 579, 588, 642
MlyI	GAGTC	2 cut(s)	198, 439
MmeI	TCCRAC	2 cut(s)	822, 830
MnlI	CCTC	7 cut(s)	65, 96, 133, 170, 265, 548, 761
MseI	TTAA	3 cut(s)	219, 371, 452
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	2 cut(s)	475, 748
MvaI	CCWGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	316, 493, 516, 770, 802
NlaIII	CATG	4 cut(s)	130, 692, 697, 764
NlaIV	GGNNCC	1 cut(s)	796
NmuCI	GTSAC	1 cut(s)	310
PagI	TCATGA	1 cut(s)	688
PctI	GAATGC	2 cut(s)	475, 748
PfeI	GAWTC	3 cut(s)	119, 134, 252
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	15, 348, 415
PleI	GAGTC	2 cut(s)	197, 439
PpsI	GAGTC	2 cut(s)	197, 439
Psp1406I	AACGTT	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	796
PstI	CTGCAG	2 cut(s)	285, 437
PsyI	GACNNNGTC	1 cut(s)	76
RsaI	GTAC	2 cut(s)	323, 396
RsaNI	GTAC	2 cut(s)	322, 395
SaqAI	TTAA	3 cut(s)	219, 371, 452
SatI	GCNGC	3 cut(s)	14, 347, 414
Sau3AI	GATC	5 cut(s)	316, 493, 516, 770, 802
SchI	GAGTC	2 cut(s)	198, 439
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	281, 433
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	4 cut(s)	428, 579, 588, 642
SsiI	CCGC	2 cut(s)	28, 571
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	2 cut(s)	80, 422
TaqI	TCGA	1 cut(s)	586
TasI	AATT	4 cut(s)	428, 579, 588, 642
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	119, 134, 252
Tru1I	TTAA	3 cut(s)	219, 371, 452
Tru9I	TTAA	3 cut(s)	219, 371, 452
TscAI	CASTG	2 cut(s)	121, 496
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	13, 346, 413
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	7 cut(s)	143, 189, 482, 710, 746, 749, 801
TspRI	CASTG	2 cut(s)	121, 496
Tth111I	GACNNNGTC	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	245
XapI	RAATTY	3 cut(s)	428, 588, 642
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.