Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002960

Physical Location & Seq

Genomic Coordinates Forward (+)

47550927 .. 47556772

Gene Structure 5846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0300700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTAGTCTTAACTTCGATGACCAAGACGGTGTTTTGAGATCGATTAGGGATGCTCCGCCAACTCATTACACACTAAAAATAGAGTCACTTTCGATGCTGACCAAAAATTCATTGGAGAAATATGAATCAGGGGAATTCGAAGCTGGAGGATACAAATGGAAACTTGTTTTCTATCCAAATGGAAACAAGAGCAAGAATGTTAAAGACCACATTTCTCTCTACCTGGTAATGGCTGGAGCAAATACTTCCCAGATTCACTGGGGTGTACATGCTGTTTTCCGGTTGTTTTTGCTTGATCAGAATACCAGCAACTACCTCGTTTTTCAGGAACAAAAGGAGAGGCGCTTTCATGCAATGAAGCTTGATTGGGGTTTCGATCAGTTTCTCTCCCTCAAAGACTTTTCTGAAGCTTCCAATGGATTTCTCATGGATGATACCTGTGTGTTTGGGGCAGAGGTCTTTGTTTCTAAGGAAAGAAGCACGGGCAAAGGAGAGTGTCTATCTATGGTGAAGGACGCTGTTATGTACAAACATGTTTGGAAGATTGACAGCTTCTCAAAGATAAACACAGACTGCCATGACTCCAAAACTTTCAGTTCTGGAGACCAAAACTGGAAGATACAACTCTATCCCAAGGGTAAAGGCATTGGAACGGGTAGTCATCTTTCCCTTTATTTGGCATTGGCTGATCCTACTTCTCTACCTCCTGGTACTAAAATATATACCGAGTTTACCCTGCGCATCCTTGAACAAACGCATCAAAGGCATCAGTTTGGTAAAGCTAGTTTATGGTTTAGTGCCTCAAATCCAGAAAGGGGTTGGCAGAAATTCATTACACTAGGCTTTCTCAGTCAGACAACCATGGGGTTTCTGTTGAAGGATACATGCATTGTGGAGGCAGAGGTCACCGTCCATGGAATTTCTAATGCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0031685 GO:0031687 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Translin

Protein Analysis

312

Amino Acids

35.36

Weight (kDa)

7.17

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 154	1.3e-38	MATH domain
MATH	PF00917	40 - 156	4.5e-12	MATH domain
TRAF-mep_MATH	PF21355	50 - 148	7.2e-08	TRAF/meprin, MATH domain
MATH_2	PF22486	178 - 303	2.3e-31	MATH domain
MATH	PF00917	183 - 305	2.2e-12	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03780 AT2G03780 AT2G03780
fragaria_vesca	FvH4_4g29320 FvH4_4g29320
malus_domestica	MD13G1056700.v1.1 MD16G1056000.v1.1
prunus_persica	Prupe.1G293300_v2.0.a1 Prupe.1G293300_v2.0.a1
pyrus_communis	pycom16g04880
rosa_chinensis	RchiOBHm_Chr3g0459601 RchiOBHm_Chr3g0459611 RchiOBHm_Chr4g0437361
rosa_laevigata	RLG00000006441
rosa_multiflora	Rmu_sc0004759.1_g000014 Rmu_sc0034128.1_g000001 Rmu_ssc0000087.1_g000062
rosa_roxburghii	Rroxscaffold_2G00092570 Rroxscaffold_5G00378550 Rroxscaffold_7G00174990
rosa_rugosa	Rorug01G0449100 Rorug04G0300700 Rorug04G0300800 Rorug04G0300800 Rorug04G0300900 Rorug04G0315600 Rorug05G0011200
rosa_samantha	Rh2BG219700 Rh3CG281200 Rh4BG365200 Rh4BG377800 Rh4CG379400 Rh4CG391900 Rh6BG022300 Rh6BG380600
rosa_wichuraiana	Rw3G022430 Rw4G031130 Rw4G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	743
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	4 cut(s)	109, 137, 830, 921
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	3 cut(s)	270, 530, 715
AfiI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	752, 880
AjnI	CCWGG	2 cut(s)	225, 709
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	5 cut(s)	146, 364, 413, 555, 785
AluI	AGCT	5 cut(s)	146, 364, 413, 555, 785
Alw26I	GTCTC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	686
ApoI	RAATTY	4 cut(s)	109, 137, 830, 921
AspLEI	GCGC	2 cut(s)	348, 744
AsuHPI	GGTGA	2 cut(s)	523, 901
AsuII	TTCGAA	1 cut(s)	141
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	2 cut(s)	227, 711
BciVI	GTATCC	2 cut(s)	146, 877
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	3 cut(s)	6, 786, 842
BfmI	CTRYAG	1 cut(s)	935
BfoI	RGCGCY	1 cut(s)	349
BfuI	GTATCC	2 cut(s)	146, 877
Bme1390I	CCNGG	2 cut(s)	227, 711
BmrFI	CCNGG	2 cut(s)	227, 711
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	5 cut(s)	43, 87, 753, 769, 778
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	3 cut(s)	168, 258, 624
Bpu14I	TTCGAA	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	636, 864, 916
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 679, 818
Bse1I	ACTGG	2 cut(s)	266, 620
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	227, 711
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	636, 864, 916
BseGI	GGATG	3 cut(s)	58, 439, 744
BseLI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	865
BseNI	ACTGG	2 cut(s)	266, 620
BshVI	ATCGAT	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
BsmAI	GTCTC	1 cut(s)	600
Bso31I	GGTCTC	1 cut(s)	600
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1407I	TGTACA	2 cut(s)	268, 528
Bsp143I	GATC	4 cut(s)	41, 298, 379, 691
Bsp19I	CCATGG	2 cut(s)	864, 916
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	864
BspDI	ATCGAT	1 cut(s)	44
BspPI	GGATC	1 cut(s)	686
BspT104I	TTCGAA	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	363
BsrGI	TGTACA	2 cut(s)	268, 528
BsrI	ACTGG	2 cut(s)	266, 620
BssECI	CCNNGG	3 cut(s)	636, 864, 916
BssMI	GATC	4 cut(s)	41, 298, 379, 691
BssT1I	CCWWGG	3 cut(s)	636, 864, 916
Bst2UI	CCWGG	2 cut(s)	227, 711
Bst4CI	ACNGT	2 cut(s)	32, 913
BstAUI	TGTACA	2 cut(s)	268, 528
BstBI	TTCGAA	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	471, 851
BstDSI	CCRYGG	2 cut(s)	864, 916
BstEII	GGTNACC	1 cut(s)	907
BstF5I	GGATG	3 cut(s)	58, 439, 744
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	348, 744
BstKTI	GATC	4 cut(s)	44, 301, 382, 694
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	4 cut(s)	41, 298, 379, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	766
BstNI	CCWGG	2 cut(s)	227, 711
BstNSI	RCATGY	3 cut(s)	275, 539, 891
BstPI	GGTNACC	1 cut(s)	907
BstSCI	CCNGG	2 cut(s)	225, 709
BstSFI	CTRYAG	1 cut(s)	935
Bsu15I	ATCGAT	1 cut(s)	44
BsuI	GTATCC	2 cut(s)	146, 877
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	2 cut(s)	864, 916
BtsCI	GGATG	3 cut(s)	58, 439, 744
BtsIMutI	CAGTG	1 cut(s)	259
CfoI	GCGC	2 cut(s)	348, 744
ClaI	ATCGAT	1 cut(s)	44
CseI	GACGC	1 cut(s)	527
CsiI	ACCWGGT	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	269, 529, 714
CviAII	CATG	8 cut(s)	272, 353, 430, 536, 581, 865, 888, 917
CviJI	RGCY	9 cut(s)	5, 146, 236, 364, 413, 555, 689, 785, 846
CviKI_1	RGCY	9 cut(s)	5, 146, 236, 364, 413, 555, 689, 785, 846
CviQI	GTAC	3 cut(s)	269, 529, 714
DdeI	CTNAG	2 cut(s)	471, 851
DpnI	GATC	4 cut(s)	43, 300, 381, 693
DpnII	GATC	4 cut(s)	41, 298, 379, 691
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	636, 864, 916
Eco31I	GGTCTC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	429
Eco91I	GGTNACC	1 cut(s)	907
EcoO65I	GGTNACC	1 cut(s)	907
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	225, 709
EcoT14I	CCWWGG	3 cut(s)	636, 864, 916
EcoT22I	ATGCAT	1 cut(s)	893
ErhI	CCWWGG	3 cut(s)	636, 864, 916
FaeI	CATG	8 cut(s)	275, 356, 433, 539, 584, 868, 891, 920
FatI	CATG	8 cut(s)	271, 352, 429, 535, 580, 864, 887, 916
FbaI	TGATCA	1 cut(s)	298
FokI	GGATG	3 cut(s)	65, 446, 731
FspBI	CTAG	3 cut(s)	6, 786, 842
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	2 cut(s)	347, 743
GsuI	CTGGAG	3 cut(s)	168, 258, 624
HaeII	RGCGCY	1 cut(s)	349
HapII	CCGG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	2 cut(s)	348, 744
Hin1II	CATG	8 cut(s)	275, 356, 433, 539, 584, 868, 891, 920
Hin6I	GCGC	2 cut(s)	346, 742
HinP1I	GCGC	2 cut(s)	346, 742
HindIII	AAGCTT	2 cut(s)	362, 411
HinfI	GANTC	4 cut(s)	86, 128, 256, 584
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	2 cut(s)	523, 901
Hpy166II	GTNNAC	2 cut(s)	269, 735
Hpy188I	TCNGA	3 cut(s)	303, 409, 858
Hpy188III	TCNNGA	3 cut(s)	329, 603, 812
Hpy8I	GTNNAC	2 cut(s)	269, 735
HpyAV	CCTTC	2 cut(s)	508, 874
HpyCH4III	ACNGT	2 cut(s)	32, 913
HpyCH4V	TGCA	3 cut(s)	356, 891, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	766
HpyF3I	CTNAG	2 cut(s)	471, 851
Hsp92II	CATG	8 cut(s)	275, 356, 433, 539, 584, 868, 891, 920
HspAI	GCGC	2 cut(s)	346, 742
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	41, 298, 379, 691
LmnI	GCTCC	2 cut(s)	61, 239
LweI	GCATC	5 cut(s)	43, 87, 753, 769, 778
MabI	ACCWGGT	1 cut(s)	225
MaeI	CTAG	3 cut(s)	6, 786, 842
MaeIII	GTNAC	2 cut(s)	87, 907
MalI	GATC	4 cut(s)	43, 300, 381, 693
MboI	GATC	4 cut(s)	41, 298, 379, 691
MboII	GAAGA	2 cut(s)	556, 631
MluCI	AATT	4 cut(s)	109, 137, 830, 921
MlyI	GAGTC	2 cut(s)	95, 578
MnlI	CCTC	9 cut(s)	143, 329, 336, 404, 451, 717, 814, 892, 898
Mph1103I	ATGCAT	1 cut(s)	893
MseI	TTAA	2 cut(s)	12, 204
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	227, 711
MvaI	CCWGG	2 cut(s)	227, 711
MwoI	GCNNNNNNNGC	1 cut(s)	766
NcoI	CCATGG	2 cut(s)	864, 916
NdeII	GATC	4 cut(s)	41, 298, 379, 691
NlaIII	CATG	8 cut(s)	275, 356, 433, 539, 584, 868, 891, 920
NmuCI	GTSAC	2 cut(s)	87, 907
NsbI	TGCGCA	1 cut(s)	743
NsiI	ATGCAT	1 cut(s)	893
NspI	RCATGY	3 cut(s)	275, 539, 891
NspV	TTCGAA	1 cut(s)	141
OliI	CACNNNNGTG	1 cut(s)	264
PciI	ACATGT	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	128, 256
PleI	GAGTC	2 cut(s)	94, 578
PpsI	GAGTC	2 cut(s)	94, 578
PscI	ACATGT	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	225, 709
PspEI	GGTNACC	1 cut(s)	907
PspGI	CCWGG	2 cut(s)	225, 709
RsaI	GTAC	3 cut(s)	270, 530, 715
RsaNI	GTAC	3 cut(s)	269, 529, 714
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	12, 204
Sau3AI	GATC	4 cut(s)	41, 298, 379, 691
SchI	GAGTC	2 cut(s)	95, 578
ScrFI	CCNGG	2 cut(s)	227, 711
SexAI	ACCWGGT	1 cut(s)	225
SfaNI	GCATC	5 cut(s)	43, 87, 753, 769, 778
SfcI	CTRYAG	1 cut(s)	935
SfuI	TTCGAA	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	4 cut(s)	109, 137, 830, 921
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	3 cut(s)	6, 786, 842
StyD4I	CCNGG	2 cut(s)	225, 709
StyI	CCWWGG	3 cut(s)	636, 864, 916
TaaI	ACNGT	2 cut(s)	32, 913
TaqI	TCGA	5 cut(s)	18, 44, 95, 141, 378
TasI	AATT	4 cut(s)	109, 137, 830, 921
TatI	WGTACW	2 cut(s)	268, 528
TfiI	GAWTC	2 cut(s)	128, 256
Tru1I	TTAA	2 cut(s)	12, 204
Tru9I	TTAA	2 cut(s)	12, 204
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	2 cut(s)	87, 907
Tsp45I	GTSAC	2 cut(s)	87, 907
TspDTI	ATGAA	5 cut(s)	102, 141, 341, 374, 823
TspRI	CASTG	1 cut(s)	266
XapI	RAATTY	4 cut(s)	109, 137, 830, 921
XceI	RCATGY	3 cut(s)	275, 539, 891
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 819
XspI	CTAG	3 cut(s)	6, 786, 842
Zsp2I	ATGCAT	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.